Detailed information on ENST00000606640

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000606640 533 278 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000606640 501 307 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000606640 617 296 UTR3 Trans

Sequence

>TCONS_00119512 (1778 nt)
CTGTGTTTGCCCTGATGTTTCTTTCAATTCCACCATTCCGAAATGTCTCCGGAATCTGTCGTTTTAGCTTTTGCAGCAAGGTTCGTTGTGTTTGTCTTGC
CCGCTTCAGGTTTCTCTAATGAGATTCACGTGTAAAGGAGGATTGGCAATTAATCGGATGACTGATTAATTGTGAGATTCTTATTCTTACCAAGGAATGC
TATGGAAGTCCTGGCTTCAGATAAAATTCTCAATGAGGGCCAGTTGCAGTGGCTCACGCCTGTAAGCCCAGCACTTGAGGAGGCCGAGGTGGGAGGATCA
CTTGAGCTCAGGAGTCTGAGACCAGCCTGGGCAATATGACAAGACCCCATCTCTGCCCAAAAAGAAAAAATTAGCTGGGCATGGTGGCACACACTTGTGA
TCCCAGATACAGCTACTTCGGAGGCTGAGGTGGGAGAATCTATTGAGCCTGGGAGGTTGAGGCTGCAGTGAGCAGAGATGGCACCACTGCACTCCAGCCT
GGACAACAGAGCAAGACCCCGTCTCAAAAAAGCAAATTCTCAAAGAGGCCTTAATATACCTTTTTTAATCATAAGCTTTAAGAGCCTGGTCATGCAAAGA
TAATTCAGTGAGATGAAAGATTGTTTATTTCCTACTGTGCATTGGTCACAACTTTGATTCCACAGAAGGGCAGTGTGCTGTCCTAACAGAGCTGAGTGTG
TGGAGTCTTAAGAGCTTCCTCCCTCTCAGCAAATGTGTATTAAATGTTTCTGCTTTGCCAGTTCCAGTGCCAGTGCCCTGTGATTAGAAGGTGAGCTTCA
CCGAGGCCTCCTGGTGTTGTGGAGAGGGAGCCCCGGGAATGGCTGGATGCAGAAGGTGAAGGTTGAGATGCAGGAGAGGGAGCAGTTAGCCTTCTGGCTT
GGGCTGTGGTGGGTGGTGCCCTCCATGAGATTCCAAAAAGGACTAGTTTGGGGAGGAATGAAATTGGCATTTGGAGAGTGTAAGATACTAGTGGAGTCTC
CAAGCAGAGCTGCCCAGGAGACAGGCTGGCCATGAGGAGAGTAGCATTCACCTGGATATAGATTTGGGAGCCACTCACCGGGAGAGAGATTCCATCTGTG
TGTCCCTGGGCAGCGTGATCATGGGAATACTGCTTAACCTCAAATCCTTGGCTTTCTCTGTAAAGTAAATGTAATAAGATCTCCACAGGGTTTGCTGTGA
GGGTTGAACGAGCTCAGTGCACATGAAAATGCCCTATACACTCGAAACCAGCTATAAATATTGGTTATTATTGTTAGGATGCTGACGTTCAAATATAAAT
TGCCAAAATCATTTGGGAAGCATTGCATACTCCATTCCCACATGGAGAGTTGCAGGGCATGTGATTATCTGTTTGTTCATTTAGTCACAATATTGATCAA
TATAGAACAAAGCAGTATATTTTAAAAATCAACCAGGAGCAGCCATTCTTTGAAGTGTTATGCAACCATTAAAAATTAGGTTTGGCCAGGCGCGGTGGCT
CAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGCAGGCAGATCACCTGAGGTCAGGAGTTCGGGACTAGCCTGGCCAACATAGTGAAGCCTTGTCTTTA
CTAAAAATATAAAAATCAGGCGTGGTGGCAGGTGCCTGTAGTCCCAGCTATTCCAGAGGCTGAGGCAGGAAGATGGCTTGAACCCAGGAGGCGGAGGTTG
CATCGAGCCAAGATTGTGCCACTGCACTCCAGTCTGGGCAACAGAGAGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00119512

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.