Detailed information on ENST00000606641

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000424496 sense_intronic sense intronic ENST00000606641 500 288 noncoding Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000606641 602 288 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000606641 602 288 UTR5 Trans

Sequence

>TCONS_00194655 (1818 nt)
TAAACCTGCACTTTAAACCTGCACTTGATCCTGAGCACAGTAGAGAGCCACTGAAAGATTTTAAGCAAGAGAGTGCCATACAGTGTTGGAATGATTCACT
CGGACAGCAATGTGGAAGATAGACCAGAAAGGGCAAGTCCAGAGGCCAACAATAATCTTAGCCTCAGAGTTCTTTTTTTAATACCCAAGAATACTATTTC
ATTTTACTTATATTTTTAAACTTTTCTCTATAACGCTCTCTCTGCTCCCCCACATTGTTGTCTGGATGGTAAACCTAGGACTGGTCTCTGAGTCCTGGTC
ACAGCCTGGCAACAGAATGTTTGAGCAAACTGGGAAGGCTGCCCCATGGATCCCTGGTTTCTTATCACCATCCTCTTAATTCTACGTTTGCCAACCAGTC
TCTAGGAAGCCAGCGTGCTCTTGCGCCCCTCCCACCAGGTTTCCAGTTGCTAAGCGTGTCATGTTTGCATTTGGGTATCATCTGCATGAGTGACCATTTT
AATCTCTCTTTCCTTGACTACTTGTTCTACACTAGAGTCTAGGGTGGGGGTGAGTACAGTGGTAAAGACAGGGATAGCGGGAAATTTAGTCTTCTGTTTA
GGAAGCTGGATGGTAGTGTGGATTTTCTAACTCCTTGTGGTAATTAAATTCTGGAGCACAGTTTTTAGACCTTTTCTGAAATCTGTTACTGTTGAAGTCA
GCTTCATATATTTCACTTTTTTTTTTTTTGAGACAGAGTCTCACACTGTTACTCAGGCTGGAGTGCACTGGTACAATCTTGACTCACTGCAACCTCCACA
GCTCCCAGGTTCAAGCGATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGTACTACAGGCGCGTGCCACCATGCTTGGCTAATTTTTGTATTTCTAGTAAAG
ATGGGGTTTTGCCATGTTGCCCAGGCTGGTCTCGAACTCCTGGCCTCAGGTAATCTGCCCGCCTCAGCCTCCCAAAGTGTTTGGATTGCAGGCATGAGCC
ACTGCACCCACCCTATTTCACTATTAAGTACTCTCTTCCTGTGATATTAATGACTTATTTGTTTCAAACTTTTTTGTGCCATTGAGCTTTTTAGTGATCC
AGTGAAGCCTGTGGACCCCCTCTCATAGTAATGTTTTCAAAGCATAAAACTAAATATAAAGGATCGCAAAGGAAACTGATCATGTTAAAATAAAGTTGAT
ATTTTCAAAGTTTTATGATCCAGTAACATACATATTCTGTTAACACAAAATAAGACTGCATGGTGGTTCTAAAATTACTATAATTCAAATTCATATCTTG
AAATATCTAACAACTGTAATATATCTAAATGTCTCATTTCTATTGGTGACAAAGTCACAGGTACTCTGATCCTACTGTGGACTGTTTCCTATATTCGTAA
TTGAAGGAAATGTTATATTTCAGTTAGAAGTTGGTGAAAAGAAAGATTTAAAATTTTTCCCATCCAAGTTCACCAGACCCCTGGTTTAGAGGTTGTCTTA
ATTTTACTTTTGTCATTTTAAGAGTAAATTATTTTGTTTTCTTGTTCAATTCTCAATTATTTGGGCTTATTTTACTGCCTCTTGCATGCTTTTTTATGCT
TGAATGGTTTTTGCAGTGTTAGAACAGTAATAATTGAAGACTTGGGTGGAAAAAAATCAGCACCTGATTGAAAATGAAAGGTTTCAACAAAAGCTCTTGA
TAATGTTACCTCCAGGTGTACCATCATGCCACCATTATTGGTGCTACAAATCTGTTAATTTATTTATGCTTAAGTATGTAAACTTTAATAAAACTTGGAT
CATCTGCATTAAAAAATAA

Expression



Full and truncated open reading frames discovered in TCONS_00194655

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.