Detailed information on ENST00000606818

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000324537 SH3-domain GRB2-like 3 protein coding ENST00000606818 576 272 UTR5 Trans
ENST00000424496 sense_intronic sense intronic ENST00000606818 530 272 noncoding Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000606818 513 258 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000606818 548 273 UTR3 Trans
TCONS_00098745 transmembrane protein 170A novel protein coding ENST00000606818 542 262 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000606818 558 273 UTR3 Trans

Sequence

>TCONS_00116668 (2064 nt)
GAGACGACTCTCGCTCTGTCGCCCAGACTGGGGTGCAGTGGTGTGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACACCACTCTCCTGCCTCAG
CCTCCCGAGTAGCTGGGACTACAGGCACCTGGCTAATTTTCTGTATTTTTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGA
CCTCGAGATCCGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCTACTATGCCTGGCCACATTTTTTTAAGTTTTGAATCATGCAAACCT
TTTTTAGAATTTCAGAATAAGAATATAAAAAATCACATCCTAACACTGAATATCAACAGAAACAAATGTATCTAACTATATATATAACTCTAACTAGATA
CCCTTAATGGACTATAGTCTAAGTGCAAAAACAATGTCCAAAAAAAAAAAACAGTTGTACTAAGTAGTTTGCTGTTGGTAGCAGTATTAGTATTGTTATG
CTGAAACTATTTTGTACGTATTGTTGGATAAAGTGAATAAGCAAGTATTGCTGAGAACCTGGGTTTTCACTGTGAGAGAGGGGAGATGCATATATAGAAT
GTGAGAAGTGATGAAGAACCTTGTAGTGGTGGACTTGAATTGGAGCTATGAGACTAAATTCGTGATTTTGAAAAAATATGATTTCCTAACACTATCCTTA
GAAAAGTCCTAAAAATAACGATGCTCCGTTAAAAGTGAGCATGTCCAACACCCATATTTGGTTTCTAAATGCTATTCCCCACTTAAAAGAACCAGAACTT
CTCAGAGAGATGGCTGATTACAGGTCTGGGGCAGGCAAGATAACAAGATGACCCTGGAAATTTTGGTGTGCATAAAGCAAGGGAGTCTTCAAACACCAAT
GACATTATATCAAAAGGACATAGGAAGTAGCTTGAAAGGGAACCACTGATAAGCTTGGGACAATTTGAGCATGAAAAAAAGACAGTGGCAGAAACTGATT
AGAACTCATTAATTAAAACATAATGGGTTATTTTCCATTAATGCCATGTGTTAGATTAATTTAAAAAACATGAAATCCACAGAAATATTAAAAAGTGGGA
AAGGGAAATCACTAGACGAAAAGTTAAGAAGATAATATTGGCCAGGAGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGAT
CACGAGGTCAGGAGATCAAGACATATTGGCCAACATGGTGAAACCCCATCTCTAGTAACATACAAAAAATTGCTGGGCATGGTGGCACGTGCCTGTAATC
CCAGCTACTCAGGAGGCTGAGGCAGGGCAATCGCTTGAACCCAGGAGGCAGAGGTTGCAGTAAGCTGAGATCGCGCCACTGCACTCGAGCCTGGTGACAG
AGCAAGACTCCAACAACAACAACAACAACAACAACAACAACAACAAAAGATAATAATCACATGGTCTGTAAATATCACTACACAGATTAATTAAAAAGGG
AAAATGTTCCTTTACAATGAGGAGAGCTAGAAGACTACACCTTAAGCATGTTCAAATTTAGCAAAACCAGTAATAAAACCTGACTTTATTGCCACCTGAT
GTGATACAATAAATACACATCATCACCCACACCAAATACTTCAGCACAAAAAGGAATATCATAATACCTACAACTTTCAAATGGTTCAGTAAATGTGGCA
AAATGCCAACAACTGGTGAGTAAAAGTGAAGAGTATAAGGATGTTAATTGTACTAGTTTTTCAACTTTTCTATAGATTTGGAATTTTGTAAAATAAGAGT
TGGGGAAGAAAAAGTGTGTAGGATGATTTGAGGACAGAATTGACTGGGTGATAGTTATTAAAGATTCCACCGTTTTAATTTCACCATATAAAAATTATGC
CACACTACTAAAACAACTAAACCTGATTAAATTTTTACCTTCAACTGAGACTACTAAATGTGACAATGCCACCCCAAAAGCGGAAGGCATAGTAATTAAG
CCGAAGTTCTAGCAATAAATTTTAGTGGGTCTTAGTCACTCTGGTAAGAAATGTAATACATTAAT

Expression



Full and truncated open reading frames discovered in TCONS_00116668

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.