Detailed information on ENST00000607222

lncRNA-RNA interactions

Number of interactions: 23

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000075120 solute carrier family 2 (facilitated glu... protein coding ENST00000607222 515 295 UTR3 Trans
ENST00000367590 xenotropic and polytropic retrovirus rec... protein coding ENST00000607222 514 250 UTR3 Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000607222 523 298 noncoding Trans
ENST00000552918 spermatogenesis associated, serine-rich ... protein coding ENST00000607222 587 281 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich ... protein coding ENST00000607222 607 295 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000607222 592 294 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus rec... novel protein coding ENST00000607222 514 250 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element bind... novel protein coding ENST00000607222 611 298 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich ... novel protein coding ENST00000607222 607 295 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000607222 566 310 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000607222 569 296 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000607222 588 309 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000607222 588 309 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000607222 588 309 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000607222 588 309 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000607222 588 309 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfami... novel protein coding ENST00000607222 508 300 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarit... novel protein coding ENST00000607222 523 308 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarit... novel protein coding ENST00000607222 523 308 UTR3 Trans
TCONS_00160920 protein tyrosine kinase 6 novel protein coding ENST00000607222 615 312 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000607222 608 297 UTR3 Trans
TCONS_00213181 tubby like protein 4 novel protein coding ENST00000607222 611 298 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000607222 611 298 UTR3 Trans

Sequence

>ENST00000607222 (2038 nt)
GCGCAGCCCCAGCCCATCCCGTGCGGACCCTACGCCGAGTCCAGCCCGGGGCTGCTGGGCCAGCGGGAGCGGGAACCGGACGGCGCTCGCGTTCTGCCAG<br />AGCGGAGAACGACTCGGGGACGGTGCGGAGGACCAGGGGAGGAGATCCGCGCCCGCACGCACCATCAGCCGAGAGGACGGCCCGCATCGCGCCAGTGACC<br />TAGGAGCGACTCGGGGACGGCTTCGGGCTCCCAGGCCCTCCTGGGCCACCGGGCACTGAGGAGAGCGGCGGCTGGAAACTGTGGGACCCGAAGGGCGGGA<br />GCCCAGGGCCCGCCCCCGCCGGAGCGCCCCCGCCATGGCCACGCCCCCGCCACGGGGATGGGCAGGGCAAGCACCGGAAGTGCGTCACGCGGGAGCGTCT<br />GCGTCGCCTACCCTGCGTGGCGCAGCTAGGTTCCGAGCGGCTTAGCCTCCGGGCGCCTGCGCAGTGGCGGTCCTAGAGACGCACTCGGTTGCCATAGAGA<br />CGGGGGCTTGGGAGCGACGTCGCGCTCGCTGGCACTGGCGGCACTTGCCGCGCCGCAGCCACCTCTTTCCGACTCCACCAGTGCGGGCCCTATCCGGGGT<br />TTTGAGTCACGCAGACCTGGACACAGCGAGAAACGGCAGTCCGGGCCCGTCCTCCCGCCCCGGGTTCTGCACCCCAGAGTTGGACGCTTGCTTCTCGCTT<br />TCTCCTGAGAGAAGTCTCCGCGTTTCTGAACAATGCACTGCTAGTTTCTCATTTCTTTCTTTCTTTCTTTTTTTTTTTTTGGAGACGGAGCCTCGCCCTG<br />TCGCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCATTGCAACCTCCGCCTCCAGGGCTTAAACTATTCTCTTGCTTCAGCCTCCCGAGCAGCTGGGA<br />CTACAGGCATGCGCTACCACGCACAGCTAATTTTTGCATTTTTAGTCAAGACGGGGTTTCACCATTTTGGCCAGGCTGATTTCGAACTCCTGACCTCGTG<br />ATCTGCCCTCCTAGGGCTCCCAACGTGCTGGGATTATAGGCGTGAGCCACCGCGCCCGGCCTCTCATTTCTTAATTGTAGACATTGCGTACTTCCGGAGA<br />AGGTCCCTGAGAACCTGGCTGATCTTCCCCGCTGCACCCCTCACGTGGTCCTGTTAGCTCCCAAACTGTCAACCTGAAAGGAAACCCAGAGGCAGGCTCT<br />CCAGGACAAGTGAGTTAATCTGGGAATCGCAGGGGGTTGCAGCCTAGGCTGTTCGTGCCATGACAGATCATAGGCCTATCTGAGAGGGCCGGGCGAAGGG<br />GAAAATACAGATGAGCTCACAAAAGTTGTTTTGTAACAAAAACCACTGGCTGTGGGCGCTTGCTGCAGGAGTGGGCGTTAGCTTGTTGTTGGAGAGAGCC<br />TTACCAGGCCGACGTCCTTGTGCAAGCTGCTTATCTAGAATACTGCAGTCCTGAGGAATTTCCCTGCAGTAAGTCCGGTTACAGGCAAACGTGCAGGACG<br />TGCAGGAGCGTCTTGTGAGGAGGCCTGCTGCAGGTATTCCTGCATGAGAGCTCCCCCTTCGTGGCCTCCCGACTCCATTTGTTTAGGGATTGGTGGAAGT<br />AGTTCCATTTTGGTACCTGCAACTTTCACAGCTGTCGTGATGAAATCAGGCTTAGCTCTTCATGATTGAGTACCTGCTGTTCACTGCTACAGTATAAAAC<br />CATGCCACAATTCCTGTACAATCTTTTTTTTTCTTTTGAGTTAATAATTACCTAATATTTTCACATATCTAGCTTTTTACTAACCCATGGCCAGCCTTTT<br />TTTCAAGTACCCCAACGTTTTCGCCACATGCCTAACGATACCGTTTTCCAAAGGCTCAAACACATCCGTTGTGTCTAACTGATTCTCCTGTTCCGACCTA<br />GACCGATCACTTCCTGACCCGGCTGCACAGCTCTTATCTCGAGCTTTTCTCTGCTCTCATCCTTGAGACTCACTTTGTCTGTCTCCTTTCTTGGATTCCC<br />TGTGTAAACGAAAAATAAAATCCTAAGCTCTCTACCAA

Expression



Full and truncated open reading frames discovered in ENST00000607222

In silico ORF/peptide predictions
>peptide 1 (85 aa)
RSPSPSRADPTPSPARGCWASGSGNRTALAFCQSGERLGDGAEDQGRRSAPARTISREDGPHRASDLGATRGRLRAPRPSWATGH

>peptide 2 (66 aa)
AAPAHPVRTLRRVQPGAAGPAGAGTGRRSRSARAENDSGTVRRTRGGDPRPHAPSAERTARIAPVT

>peptide 3 (65 aa)
AQPQPIPCGPYAESSPGLLGQREREPDGARVLPERRTTRGRCGGPGEEIRARTHHQPRGRPASRQ


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT000343 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8WTZ3|YS049_HUMAN (Evalue: 3.0E-26)