Detailed information on ENST00000607222

lncRNA-RNA interactions

Number of interactions: 23

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000075120 solute carrier family 2 (facilitated glucose transporter), member 3 protein coding ENST00000607222 515 295 UTR3 Trans
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding ENST00000607222 514 250 UTR3 Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000607222 523 298 noncoding Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000607222 587 281 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000607222 607 295 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000607222 592 294 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding ENST00000607222 514 250 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000607222 611 298 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000607222 607 295 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000607222 566 310 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000607222 569 296 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000607222 588 309 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000607222 588 309 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000607222 588 309 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000607222 588 309 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000607222 588 309 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000607222 508 300 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000607222 523 308 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000607222 523 308 UTR3 Trans
TCONS_00160920 protein tyrosine kinase 6 novel protein coding ENST00000607222 615 312 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000607222 608 297 UTR3 Trans
TCONS_00213181 tubby like protein 4 novel protein coding ENST00000607222 611 298 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000607222 611 298 UTR3 Trans

Sequence

>TCONS_00213191 (2037 nt)
GCGCAGCCCCAGCCCATCCCGTGCGGACCCTACGCCGAGTCCAGCCCGGGGCTGCTGGGCCAGCGGGAGCGGGAACCGGACGGCGCTCGCGTTCTGCCAG
AGCGGAGAACGACTCGGGGACGGTGCGGAGGACCAGGGGAGGAGATCCGCGCCCGCACGCACCATCAGCCGAGAGGACGGCCCGCATCGCGCCAGTGACC
TAGGAGCGACTCGGGGACGGCTTCGGGCTCCCAGGCCCTCCTGGGCCACCGGGCACTGAGGAGAGCGGCGGCTGGAAACTGTGGGACCCGAAGGGCGGGA
GCCCAGGGCCCGCCCCCGCCGGAGCGCCCCCGCCATGGCCACGCCCCCGCCACGGGGATGGGCAGGGCAAGCACCGGAAGTGCGTCACGCGGGAGCGTCT
GCGTCGCCTACCCTGCGTGGCGCAGCTAGGTTCCGAGCGGCTTAGCCTCCGGGCGCCTGCGCAGTGGCGGTCCTAGAGACGCACTCGGTTGCCATAGAGA
CGGGGGCTTGGGAGCGACGTCGCGCTCGCTGGCACTGGCGGCACTTGCCGCGCCGCAGCCACCTCTTTCCGACTCCACCAGTGCGGGCCCTATCCGGGGT
TTTGAGTCACGCAGACCTGGACACAGCGAGAAACGGCAGTCCGGGCCCGTCCTCCCGCCCCGGGTTCTGCACCCCAGAGTTGGACGCTTGCTTCTCGCTT
TCTCCTGAGAGAAGTCTCCGCGTTTCTGAACAATGCACTGCTAGTTTCTCATTTCTTTCTTTCTTTCTTTTTTTTTTTTTGGAGACGGAGCCTCGCCCTG
TCGCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCATTGCAACCTCCGCCTCCAGGGCTTAAACTATTCTCTTGCTTCAGCCTCCCGAGCAGCTGGGA
CTACAGGCATGCGCTACCACGCACAGCTAATTTTTGCATTTTTAGTCAAGACGGGGTTTCACCATTTTGGCCAGGCTGATTTCGAACTCCTGACCTCGTG
ATCTGCCCTCCTAGGGCTCCCAACGTGCTGGGATTATAGGCGTGAGCCACCGCGCCCGGCCTCTCATTTCTTAATTGTAGACATTGCGTACTTCCGGAGA
AGGTCCCTGAGAACCTGGCTGATCTTCCCCGCTGCACCCCTCACGTGGTCCTGTTAGCTCCCAAACTGTCAACCTGAAAGGAAACCCAGAGGCAGGCTCT
CCAGGACAAGTGAGTTAATCTGGGAATCGCAGGGGGTTGCAGCCTAGGCTGTTCGTGCCATGACAGATCATAGGCCTATCTGAGAGGGCCGGGCGAAGGG
GAAAATACAGATGAGCTCACAAAAGTTGTTTTGTAACAAAAACCACTGGCTGTGGGCGCTTGCTGCAGGAGTGGGCGTTAGCTTGTTGTTGGAGAGAGCC
TTACCAGGCCGACGTCCTTGTGCAAGCTGCTTATCTAGAATACTGCAGTCCTGAGGAATTTCCCTGCAGTAAGTCCGGTTACAGGCAAACGTGCAGGACG
TGCAGGAGCGTCTTGTGAGGAGGCCTGCTGCAGGTATTCCTGCATGAGAGCTCCCCCTTCGTGGCCTCCCGACTCCATTTGTTTAGGGATTGGTGGAAGT
AGTTCCATTTTGGTACCTGCAACTTTCACAGCTGTCGTGATGAAATCAGGCTTAGCTCTTCATGATTGAGTACCTGCTGTTCACTGCTACAGTATAAAAC
CATGCCACAATTCCTGTACAATCTTTTTTTTTCTTTTGAGTTAATAATTACCTAATATTTTCACATATCTAGCTTTTTACTAACCCATGGCCAGCCTTTT
TTTCAAGTACCCCAACGTTTTCGCCACATGCCTAACGATACCGTTTTCCAAAGGCTCAAACACATCCGTTGTGTCTAACTGATTCTCCTGTTCCGACCTA
GACCGATCACTTCCTGACCCGGCTGCACAGCTCTTATCTCGAGCTTTTCTCTGCTCTCATCCTTGAGACTCACTTTGTCTGTCTCCTTTCTTGGATTCCC
TGTGTAAACGAAAAATAAAATCCTAAGCTCTCTACCAA

Expression



Full and truncated open reading frames discovered in TCONS_00213191

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.