Detailed information on ENST00000607458

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000607458 611 293 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfami... protein coding ENST00000607458 518 285 UTR3 Trans
ENST00000491277 protein tyrosine phosphatase, non-recept... processed transcript ENST00000607458 618 296 noncoding Trans
ENST00000549365 DNA-damage regulated autophagy modulator... nonsense mediated decay ENST00000607458 511 288 CDS_UTR Trans
TCONS_00027001 programmed cell death 4 (neoplastic tran... novel protein coding ENST00000607458 619 288 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic tran... novel protein coding ENST00000607458 619 288 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000607458 522 293 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000607458 611 293 UTR3 Trans
TCONS_00233179 BCL2/adenovirus E1B 19kDa interacting pr... novel protein coding ENST00000607458 610 296 UTR3 Trans

Sequence

>ENST00000607458 (492 nt)
ACAAAGCCTGTCCAGATTGCATATTTGAAGTCTGTTTTGAAGGTTTTCACACTTGGTGAAACTCTTCACATAAAGCCCAATTCTAGCTTTGCAGGTTTGC<br />ATTTCCTTTTTTTTTTTTTTTTTTTTAAAAAAAGAATTTTTCTGCGAAAATCCTTTAAAAAGAAAAAAAAGCTTTATACAGCTGGGCACAGTGACTCACG<br />CCTGTAATCCCACCACTTTGGGAGGCTGAGGAGGGTGGATCACTTCAAGTCAGAAGTTCAAGACCAGCCTGGCCAACATAATGAAACTCCGTCTCTACTG<br />AAAATACAAAAATTAGCCGGCCATGGTGGCGTGCACCTACAATCCCGGCTACTCAGGAGGCTGAGGCACGAGAATCACTTGAAGCTAGGAGGCAGAGGTT<br />ACGGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTATGTCTCAAAAAAATAAAAAGGCTTTCTAACTTGCTAC

Expression



Full and truncated open reading frames discovered in ENST00000607458

In silico ORF/peptide predictions
>peptide 1 (68 aa)
TKPVQIAYLKSVLKVFTLGETLHIKPNSSFAGLHFLFFFFFFKKRIFLRKSFKKKKKLYTAGHSDSRL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT054893 (Evalue: 1.0E-63)

Best hit to Swiss-Prot:
sp|Q8N2A0|CX062_HUMAN (Evalue: 6.0E-28)