Detailed information on ENST00000608317

lncRNA-RNA interactions

Number of interactions: 22

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000608317 601 302 UTR3 Trans
ENST00000295822 eukaryotic translation initiation factor 5A2 protein coding ENST00000608317 577 313 UTR3 Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding ENST00000608317 612 298 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000608317 546 304 CDS Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding ENST00000608317 541 309 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000608317 536 282 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000608317 522 293 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000608317 546 307 UTR3 Trans
TCONS_00007944 kin of IRRE like (Drosophila) novel protein coding ENST00000608317 538 304 UTR3 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000608317 610 292 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000608317 610 292 UTR3 Trans
TCONS_00104871 hepatic leukemia factor novel protein coding ENST00000608317 562 311 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000608317 542 290 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000608317 601 302 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding ENST00000608317 503 271 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000608317 503 271 UTR3 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000608317 602 266 noncoding Trans
TCONS_00182243 homogentisate 1,2-dioxygenase novel protein coding ENST00000608317 582 308 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000608317 614 299 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000608317 631 282 UTR5 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000608317 547 297 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000608317 604 294 UTR3 Trans

Sequence

>TCONS_00239255 (2255 nt)
GGGGGTGGGGCCTTGGGGCCGCGAGTGGGAGCGGGAGCGGTTCTGCGGCCTCCTCGGGCTTCTTGGCCCTGGGCGGAGTGGGATTGGGTGTCCCGGCTGT
TCGCAGTGGCCGCGAGTGCGGCCGGACCTGGAGTAGTACCTGAGCCGCTCTGGCCGAGCAAGGCGCGGGGCCCCGGTCTACACCGCGCTGGACCCGGCTA
TGCCGTGACGGAATTCCCGAGGCCGTAGCGCCACGCGAGACGCGCACTGGTGGCCTCCGCGGCGAGTCCTGGGGTCTCCGCAAGGCCTCAGTGCCCGAGC
TGGGGACGTGCTGGGGGGAGGCCCGGCCCCGTCGCTGCCCGAGGCCCCGCTGTCCCGGCCGGACCGGCCTGGTCCCTGGCGTCCTGTCGGGTCCGCGCTG
GAGGAGAGTCCCAGACAGCAGAGCCCGCGGTGCAGCTCCAGCCCCGGGAAGCCCCGCGCTCAACAGGTTAATACTACACAGCGGCGATTCTAATGGTCAC
GCTTTTATTTACAGCTCGCCTCCCTTCCGCCAAGATTCACAGAACACGGCAGAGTGGCCTCGGGATCACCTGCCCAAGACACCTGCACGACCGGAAGTTG
GGAGAAGAAATTAAGGCCATGATGATGAACGCAGCCTTTCTCGTTTATTTCCAATCCCACAACAAACCGGAGTCCAGGAACTCATGGGTGATTATCGGAC
TATTACCTAGTCGTAAAACTGTGGAGCATTGGTGTCTAAAGGAATCTGAGACAGACCCGCAGTGTCTCCCCCACATGCCTTAAGTCACTTCTGCCAAGCA
GAAAATCATTTTTAAGTAAATGTTAGTGAAATTGGTTTTAAAAAAGAGAAGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCTATCCTTTAGGAGGCCG
AGGTGGGCGGATTGCCTGAGTTCAGGAGTTCGAGACCAGCCTGGGCGACACGGTGAAACCCCGTCCCTACTAAAATACAAAAAATTAGCCGGGCGTGGCG
GCACGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCTTGAACTCGGGTGGGGGAGGTTGCAATGAGCCGAGATCGCGCCGCTGCAC
TCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCTGAAAAAAAACAAAACAAAACGAGAAGGCTTTCAAAATTACTCTGCGGTACACTAATTTAACAGATT
AGATCACTTTCCAGGCTTTAAGTTGGCCTTTGTTCTACCCTTTTTTTAGTGTATGATAAAAGTTGTGTTGGTTCGTTGATCAGCATGCAATGAACTCTGG
CTCTTGTTAATCAGGTGACTACAGTTTTGTCCTTACATTTGTATGTATGTCATGAGTGGTTTTGTATGGGCAGGAGGTAAACAACGCACATTTAAATATA
CTTAATGATTTATCATTCCAATGTTTTCTGGTTGTTTTAGTCTTTCATTTGTCTCTTGAACAATCTGAAACATCCCTATTCTAAGGCTAAAAAATTTCCT
TTACAAACTTAGGTTAAACATTCCTAATCTGAAATCCAAAATGCTCTAAAATTCGAATTTTTTTGAGTACTGACGTGACCCCACAAATGGAAAATTCCAC
ACTTGCCCTCATGTGACACTGGGTGACAGTCAAGTCACAATCAAGCCTGGTGTGGTGGGCACCTGTAGTGCCAGCTACTCGGGAGGTTGAGCAGGAGGAT
TGCTTGAGCCCAGGAGTTTGAGTCCAGCCTGGACGATATAGCCAGACCCTGTCTGTAAAAAAACAAAAACCAAAACAAAAAAAACAATGAAAACATTTTT
TTTTAAAACGCCATCAAAACTTTGTTTCATGCACAAAATTATTTAAAATATATAATATAACCTTACCTTCAGGCTATGTGGGTAAGGTAAGGTGTATGTG
AAACAAATGAATTTCCCATTTAGACTTGGGTCCCATCCCCAAGATATCTTATTATGTATATGCAAATATTCCAAATCAAAAATATCTGAAATACTTTTGT
CCCAAGCATTTCAGATAAAGGTTACTCAACCTGTAATAAAAACACTCAGTGCTTGCCTGAAGGAAAAACCAAGAATTTGTCATCCATCCTTAAATTTTTA
TGACACCCTTTGTAATCAGGAAACCTTTTAATACCTAAGAATATATTTGATATATTCTGGTATATGTTTATCATTCTGATGTTTAATGTTCTATGTTGGG
CATATATCAGTGTAATAAATACATTAGATCCAAATACAGATCATGCTGCCTTTTTA

Expression



Full and truncated open reading frames discovered in TCONS_00239255

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.