Detailed information on ENST00000608335

lncRNA-RNA interactions

Number of interactions: 19

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000448214 antisense antisense ENST00000608335 591 286 noncoding Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay ENST00000608335 535 288 UTR3 Trans
ENST00000560870 sense_intronic sense intronic ENST00000608335 540 259 noncoding Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000608335 615 285 UTR3 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000608335 614 284 UTR3 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000608335 614 284 UTR3 Trans
TCONS_00030165 antisense novel protein coding ENST00000608335 591 286 UTR5 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000608335 530 237 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000608335 530 241 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000608335 585 291 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000608335 605 290 UTR3 Trans
TCONS_00210928 leucine rich repeat containing 1 novel protein coding ENST00000608335 610 266 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000608335 649 277 UTR5 Trans
TCONS_00243475 osteoclast stimulating factor 1 novel protein coding ENST00000608335 609 266 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000608335 604 285 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000608335 604 285 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000608335 609 266 UTR5 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding ENST00000608335 626 285 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000608335 631 287 UTR5 Trans

Sequence

>TCONS_00252827 (7062 nt)
GTAAAAACTTAAGGTCTTATTCAGGTCATTACTGGGCCTTTGTCTTTCCCTAGGCAGGTATGTTGGCTTTCTAAATTCTCTCACATATGCAATTACTTTT
TAGTCTCCAAAAACAGGTGTATCCCTTTTGAATCCCTTGGTGGCTACTTCAGTTTATGGAGGTTGGATAACTGGTGACCAGCCTACATGCCCACACCACA
TTTATCAGAGAAGCACTCCATAATTAGAACACAGAGCCCTGGTGTTTGGAAGGCCAGGTCTTTATTGTCTACCCTGGCTCCAGCAAGACCTTTCACCCTT
GAATGTGGGTTATGGACCCCAATGCCACATGACATGAGACTATAGAGACTGTGGTTGGGGGATGGTAGTTGCAACCCTGCTCGTGGCTTAAATAAAGCAA
AGATTACCATAATGTACCAGCCAAGCTGTCCCCTGGAAGCTGCAAGTGTTCAAAATAAACTACGGAGGTTTAAAATGTTTGCCTCAGCCAATTTCTTCCA
ATATAATTGTGCAGATAGAGATGGATTTTTGGTATTTTGTACTTTGCCATTTGTCTTGACTTCATTCTCCTAAGGATCAGTTTTAATAGTGAAGCATAAT
TACTCTTTGAAGCATGTTAGTTTTCCTGTATTGGAAGTCCTAATTTGTTCCTCTTTTGTTAAATTTAAAATGTGTATGACTCATTATATTGGCATCCTGA
AATAAATAACTCTTTGTAATCCAGACATTTTGATTAATCAGAAAATTACACTAACATCCTAGTCAATTAAATGTCTATGCAGCACTGTGGTCCCACTTTG
CAGAGTGACTATAATTGCCTTGCTTTGCCATTAGTAATTGTTCTAGAGTGTGAAATAATTGTAAGTGTATGAAAGCTCTTGTAGAGAGAACTTCACCTAG
GCTTGTGGCATTCACTATTAAAGCAATGAGTGCCTTCTGGGGACAGTCAGCTCAACTGACTTCAAATTTTTGCAGAGTGTCATCACAAACACTAAGTATA
GATTTCAGTTTGAAAAACTTTAAATTTACCTTTTATTGCAGTGTTTGGTGGTATAAATGCAGCTAAAAGCATGAGTTAACAAAGTGAGATTTAGAAAGGA
AATGTCATTGACTGCCTGAGCTATGTACTTCATGGAATATGTTTTTGTAATAAAGCCCCTAGAAAATCGGGAAACTTATGAAACAAGCTTTACATATGTA
TATGCATACATATATGTTTAAAACTTATATTGGACTAAGGTTAGAATACTTAGTGAGGTCTAAAATGACAAATGGGGTGTGAGAATGTAAGCAAAGTAAA
CAAGGACTGTCAGTTCTTAATTTATTAGCAGCACATGCTCACCAGGAACCCGTTGTCTTAAAGCCAATCCCCTGAGAACAAACAGCATTGAGTCTGAAAT
TCAAATTTCCCAGAATGGAAAATGATGAGCCCTAGAATTTTAGAGTCTTGTCATTAAATTTGCAAAGTTCAGTTACACCACAGCCCAGCTACTTACCAAG
TGCCTTATTACTCTTCTCTTTGGGCCTACTTAACCCAACTAAAGAATCAGGGAGTCAGACTAAATATCCATAAAGGTCCTCCTAAAGACACATCCTCTGG
TTCATTTTGAATATCTAACTTAACATTCTGTCCCTGCAGGTGTTCTTTTTTATAGCATCATTTTAGAGCTGTAGCCTATCTGCAGAGGAAGAGCTACAGG
CAGGTTTGGAGTGCATGAGTTCATTACAAATACCGTGTTTTATAAATTGATGCCAGTGTTCTTGACCTGTCTTGTGAACAACTGGGACCTTATTTCCTGT
GTCACTCTCTCCCCTTTGCATCTTAACACTTTCAGCTAGTCTTAGAGGTTTCCATTGAGTTCTGAGGACAGACTTTCAGAATCCTCATTCTCTTGCTTCC
TTTCCTCCAGAGATATTTCTGTTCATTATTGTCCTTATTATGTGTTTTTTTTTTCTGATTATGAGGCAACTAAAATCATCTGATTATTGATCACTGTGTT
GAACCTCTAACTGTATTTCTTCAATGGTTTGATATATTTTTCCTTTTTTTGAGATGAATTCTCATTCTGTTGCCAGGCTGGAGTGCAGTGGCATGATCTC
AGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGAACGTGCCACCATGCCCAGCTAATT
TTTGTATTTTTAGTAGAGACGATGTTTCACCATGTTGGCCAGGATGGTCTGGATCTCTTGACCTCATGATCTGCCCACCTCGGCCTCCCAAAATGCTGGG
ATTATAGGTGTACACCACCGCACCCAGCTGACATATTTTTCATAGTTAATATTGCTAGTCAGTATGAGTTTTTAAATGTGCATATTTCGTTTACTATTTT
TCTTCCTTCAAGCCTCTGAAAATATTGATGGTGTCTCAAAATTAATAATTTATTGATTGAAAAAATTCCATTGATCTATTCATATTTATTTATAACGTAC
CAAATCTAGTGCAATAAGTAGTCCCAGGAATTTGGTTCCCATTTGGGAGTTATACTTGAATTTCATTTATAAACCCAATTTCTCTCCTCTGGCACATGTA
TTCATAATCATCTTAGCATGCTTTTAGTTGTTACAGATGAGGTAACTGCAGTTTGATGTTTACTCTACACTCTTTTTCACCTGCAAATGTTAGCTAGAGC
TGCGTGGTCCTATAAGTTTGCTGTACCCTTGATAAAAGAACTTACATTTTATAATCATTGCTATGGCTGTACTGGATCGTGGATCCATAACTCTACAGGT
TTGTCAAACACTACCAAATGCTACACCACAAACACTGATCTTTATTCTTTGCTTATTAAAACAAGCAACCAACCAGGTTAATGTATTCCAAGAGGAAAAA
GAAATTGACCAAACTAACTTTGGAAAATGGTAATTTGACTGCATAAGGTTTACACAAACTGAGCTGTGTGTAAACACGGTATCTAGTTGGTAATTTTATC
ACAGGGACAAAAGTTAATTCTGACATTACTTTTCATTTTCATTTACACTAGGCTAGAGAAAATGAATAAGTTGTAGAGAATGTGAGCTAGATTCCTCACT
GTTACAGAAGGAAGTTATAAGTTAGAAAGGGTACAAGACTAGAAAAAATCCTGTGGTGCCAGATTAGAGTTAAAAATATCAATATATACGCAGATAGATA
TGTAGATAAGATAGACTCACAGAGAGATGGTAGTTAGGCAGATAGATAGATAGACAGATACATATACATAGAGATTGATAGATGATGTATATACATGGGT
TAGGACACACTATTGCTTGTTCTGTCTGCTAAGAGATACATGCATCCCGTAAGCAATGAGCATAAATCTTGGTTTCTAAATAACATTCTCCAATATAATG
ATTCAGATCTCTGGAGCAATGTTTGCTTCTAGGACTGGGGCAGTGAAAACATAAGATGATCCTGGAGCATCCTGATGTGCCAGCAGGCCAGAAAGTGCTC
AAAACACAAGGATGTGGCATGCGTCGTAATCCAAAGTAAAATATAAAGAGACGTGAGTCCATACTATGCAAATACATTGTTAATTAAATGAATGAGAAGG
AAGAGACTAATCTTTCCCATGGAAGAATTTCAAATAATTTATGTAGAAAACATGAGGGCAAAGAAAATCACCATTAGAACACTATAGTGATAGTGGCTGT
TGGCAAGATCCAATGAGGGACCCATATTAGTGGGTGAAACTTGAGGAGGAAACAGGGTATTTGCAAAGCCTGAAAGTATCTTTAACCGAATATTTACTAA
TTACCATGGTTGTTTTAATATACACTCACAAATATATTGTTATTTCTGCCTTAAAGAGGTGGAGTTTAATTTTCCTCTCCTTAAGTGTGGGCTGGATTTA
GTGACTCAATTTTAACATATAGAGGATGGAAGGGAAAAATAACCTCGCAGAGGAGCAACCTGGCAGACACAAGCTAAACCGAGTGATTGCGGTTCATGTC
ACCAGTGATGCCTTATCCCCATAGGATGTGATGAAAAGGCCACCTCACCTCTGCAACATTCTTCCCTCAAATCCATAATCCTAGTCTAGTCAGACAAACA
TAAACCAAGGGAACTCCACACATATCCAACTGGTTTTCAGCAAAAGTGCCAAGGTCATGAAAAACAGAAAAGATTGAGACACTGTCACAGAGTCAAAGAC
ACTAACACATCATGATGAGCAAACATGGCACAGTACCCTGTATTGGATCCTGGAACCAATAATAATAATAGAAAAGTGGCAAAATCCAAATGAATTGTAT
AGTCTACTTATAGTATTATACCAATGTTAATTCTTCTTAGTGTTGTTAAATATATTATAGTTACATGAGATGTTAACCTTAGGGGAAGTTAAAGGCATAT
TGAAACCATCCACACTATCTCTGGAACTCTTCTCAAAATCTAAAATTACTTCAAAATAAAAATTTTTTAAATCAGGAAAGAGGCTAAAGCGGGCTGGGTG
TGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGTGGAGGTGGGCAGATCACTCTAGCCCAGGAGTTTGAGACCAGCCTGGCCAATGTAGTGAAGCC
CTGTCTCTACTAAAAATACAAAAAGTAACCGGGCATAGTGGTGAGTGCCTATAATCCCAGCTACTTTGGAGGGTGAGGCCGGAGAATTGCTTGAACCCAG
GAGGTGGAGGTTGCAGTGAGCTGAGGTTGCGCCACTACACTCCAGCCTGGGTGAGAGAAAAATAAAAGAGGCTAAAGCATCAAAAGGGGGAGCAGGGAAG
CAGGGCTCTCTTTTGTCTTAATAAGGAAGTCTGAGAAGTTCTGGCACCATTGTCATATGTTTCTAGCAGAGCAGAATGCCAGGGCTGGGCCATGTCTGGG
GAACAGCCTCAGGATAGAGTAGACAGCATATAAGGGAACTGAGGCCAGACCCCAGGAAGAACAAAAAATATATATTTATGCAGAGAGAACAATATAAACA
AGCTTCTACTGCTCTGATGATAAATGTGAGATGATTCACAGGACACTAATTCATATCTACTCTTACCATCAGAAAATATAAACACTATTAAAACAAAATG
TTTACATAGATCCAAGCTTATATTGTGAAAATAGAACTTCTCATTGTTCTCTACATGGGGGTGTGTACAACACTGGTGGACCCCGCAAGCTTGCTCAGGT
ACAACTCAGGTACAGGATCATTTGGGAACCCTGAGCATGGCCCCTGAGCCAATGTATAACATGATTGGTCAGGCTGGTTCTGCCTTGAATAACACAGATT
CCACTTTAGCTGAGAGAAGGTAATATTTTTTTAAATTCCATTTTGGTTTATCTACACTGTTTTAGAATGTATGGGTTTCTCTAGATCCTCTGTTACTTCA
GGTGTGACATTTTATGCACGTCACTTGTTGCAGCCCACTGGTGTCCACATTCTGCCATGTGATGTGGAGGATCCTCACCTCCATGTAGGCCCATTTCTCC
TTCTCACTTTACAACATAATTTACATGCATGAAGAACTATATCAGACCATGGAGTAATTTTTGCTTCAATCATCAAACACAGTTTAGAAAAACTCAAGAA
GGCCAGTCTGTCGTGTTTATCCATGTTTTTATTATTTCTATTTTTCTTCATTCCTGATGTTATGTTTCCTTATTTTATCATTTTGTTTCTGAATTAAGAA
CTTCCATTAGCCACACCTTTAAGAAGGTTGCTGTGTCCTTCCTTGAGTCCCAGGTCCCCCTGGCAGCCCACAGTGTGGATCTGGGATACACAGGGTGAGC
ACAGGCTGTAGGAGTTCTTGAAATTCTGGCAGGGGTTCTGCACTTGACCTAAGAGGTAAGGCACCAGCACTTCTGAAACCAGACAGAATTGGATGGAAGC
TGTATTTTAAGGTGATTGTCTGTATTTATGAGGATTAATCTTTTGGATAATCTGGAAGGCCTGGGGGACTCACTGGAAAGATATGGTAATAATTTCAATA
AATATTTAAGGGCTATACCAAGTTGAGGCTGGTAGGACCAGGGAGAAGCAGCTGCATGCTACATATTGAGATCATCTAAAGACAGCAAATTGATGTTTTA
CATGAGGTTGATTTTGAAGAGTAAGGAGGCATATCTGGTCCCCAGTCTCATCTCTGGAAAGAACTGCACCAGACCCAATCCACCCTAATTACCTGTTCTC
TCCTGATTGTGAAGTCTATGAAAAGAAACACATAGGTCATTTTCAGAAAATGAAGACATGGTGTTAGTAGCAAAATCTCACTGTGGTGTGAATGAGCATT
TATGAACTGTCAGGAAGGAGCCCTTCATTGCTCTGTTGTCAAGAATGGCAGACACTAAGAGCTCAGCCAGGGCTTTGACTTAAGCTCCATGTGAATAACC
TTGGCCTATGCTCCCTGGACATGCAGTTCACTGTCCGCAGAGTGTGGCCAGTTTGTCTGATGGGAGGAATCACATGCACTGTGAGTCACCCCTTGCAGCA
AGAAGTCCACAAACAGGACTTTTTCCTGGCAATAGTAAGTGAGGTCAGCTGGGGTGTGGAGCTGCCCAAGACTGGCTGCACACTCCAGGGATGGGAGTTT
TAGTGCCCTGGAGGGAGCCTCCACCTGTGACTGCTTTAGCACTGCCCTGAGAACCATGGTCCACATGGCGCCTGTGAGCAGAGATGGGGGAAAGAGGAGA
CATCACTGGGCTGCAGAGGTCAACAGGGTTGTGGAAGTGTCTTTTATTGCAATTAAGTTTTCTAGTCATGAAACCTCTTCGAGGTATAGAATCAGCTCTG
AAATTCTCAAAGTGTTTTGATCATAGTATTTAAGGATTTATTTTTTTAACTGAGATTTACATTACTATGTATTTGCAGTAATGTTTTTGTTAAAAGTTGT
ATCGTAATGTATTTAGCCAGAACTTAGTGTCTGTGAGAAAGAAAAGATACTAGAACTTCTTACTACCTTCTAAGATATAAAGTTTAAAATTATATAATGT
AACCAGTGACTTCCCTGTTTTAAAAAATCACATACTCAAAAAAATAAACTTACTGTCTGTATA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.