Detailed information on ENST00000608834

lncRNA-RNA interactions

Number of interactions: 22

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000323699 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000608834 525 265 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000608834 525 265 UTR3 Trans
ENST00000448612 WD repeat domain 27 protein coding ENST00000608834 536 296 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000608834 570 297 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000608834 528 297 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000608834 623 283 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000608834 628 285 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000608834 628 285 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000608834 628 285 UTR5 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000608834 633 295 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000608834 633 295 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000608834 525 261 UTR3 Trans
TCONS_00118358 l(3)mbt-like 4 (Drosophila) novel protein coding ENST00000608834 618 276 UTR3 Trans
TCONS_00118361 l(3)mbt-like 4 (Drosophila) novel protein coding ENST00000608834 618 276 UTR3 Trans
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000608834 629 276 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000608834 629 276 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000608834 629 276 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon gamma transducer 1) novel protein coding ENST00000608834 579 295 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000608834 621 295 UTR3 Trans
TCONS_00219475 WD repeat domain 27 novel protein coding ENST00000608834 536 296 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000608834 603 295 UTR5 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding ENST00000608834 618 280 UTR5 Trans

Sequence

>TCONS_00249092 (3442 nt)
GGAATCCATAGCCTGCTACCATTTATTGTGTAGCCTGCAAATGGTTTTTACATTTTTAATACATTGGAAAAAAAATTAAAGAAGATTATTATTTCGTGAT
GTGAAAATTATACATGTTGAAAGGAAAACTTTAGAGTTTAATTGAGTAAAGAATGATCTGTGAATTAGGCAGCCCCCAGAACCAGAGTAGGTTTGGTTAC
AGCTGAGCATTTGCCTTATTTGAACCTGGTTTGAAGAGTTGGCTGCCTGTGGTTGGCTGAAGTTCAGCTGCTGTGATTGGCTGAGACTCACTACTTGTTA
CAAGAGTAGGTTACATATCAAGTTTTACATATCAAGTTGAAATATAGTTTTTTATGTACTGGGAAACCTTTAGGGTAAACTTAAAATATGTAAGGAGGCA
GCTTTAGGCCACAATGAATTTAACAATTCCTCCTTTTGGTCAACCTGTCAATTTTGAGAGGATGATTAATTTTGAGGTTGCCCAAAACTTTAGGCATTGA
CATCACTTTTTATCATCATAAATAGAGTTATTTGGTCTCTAATGCCATTGGAAAATAGCAGAACACTGGATTTTGTAAGGTGGGAACAAGGAAACAGTAT
AGAAAAAAAAAACTGATTGGTTAACATCAGATTACTTTTTTATTTTTTTGTCACCCAGGATGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCAC
CTTTCGGGTTCAAGCAATTCTTCTGCCTCAACCTCCCGAGTAGCTGGGACTACAGGCATGTGCCACCACACCCAGCTAATTTTTGTATTTTTAGTATAGA
TGGGGTTTTGCCACGTTGGCCAAGCTGATCTCAAGCTCCTGACCTCAGGTGATCCACCCGCCCTGGCTTTCCAAAGTGCTGGGATTACAGGCATGAGCCA
CTGTGTCTGGCTGAGATTGCTTTCTTGTAAGTAATCTGTTGTTACTTTGGGTTACTTTTCTGTAAAGGATAGAGCAGAGGGGACTTCCTTATTATACTGG
AATCTTCTGTCTTCAGGAGAAGAAAAAAAAAAACTCATCTATTTTGGGACCTGTTTTTTAAAGTTTTAGTTTGATTTTGTGGTGCTTAGCATGAGTGACT
CCATTTTGGTTTGGTCTGGTCTGCTTGGGATTAGTGCAGGAGCTCAGTCCAAAACAATGACCTCTCATAATTTTGTTTAATACATGAAATTCAAATTTCA
AACTTGTAGACATTTGCTCTCTCTCTTATATTATATAAGTACCTACACAATGTCCTCAAATTTGCTTTTTGATCTGTAAAGACTAAGATATTTATCATCT
AGTTTTACAGAAAAGTTTGCAGATCTTCTGGTTTAAAAGAGCAGGAGATTTAGTGTCAGGCAGGTTTGGATTGAGCCCAAGGGCTGCCATTTACTGATTG
TATGACTTTGAGCAAGGTATTTATCTTTTCTAAGCCTCAATTTCCTCATCTATAAAATGGGCACACAAATAGTATTTACCTTGGAGAGTTAAATGGGATA
ATGCATTTAATGTGCTTAACACAGTTGCCTATCAGATGCTTAGGGGCTCAAAACATTACTATTGTTGTTGTTGTTGTTTTACCCTAAAGTAAATGAGACA
AAATAGCAAAGCTAAATGAGGAGGAATTTTTAAGTTACATCAGAAACTGTAATAGATTCTAAAATATTATAATTAAGAAATTTCATACTTATTTAAAAAG
GCATTTTCAATTTAACAATTTAACAATTTAACCCTCTTATAAGTTAAAAAAAAAAAAAAAAAAAGCCCGGCACAGTGGCTCACGCCTGTAATCCCAGCTC
TTTAGGAGGCTGAGGTGGATGGATCAGGAGGTCAGGAGTTCAAGACCAGCCTGGCTAACGTGGTGAAACCTCGTCTCTACTAAAAATACAAAAATTAGCT
GGGCGTGGTGGTGCATACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGAGGCAGAGGTTTCAGTGAGCCAAGATCGTG
CCACTGCACTCCAGCCTCAGCAACAGATCAAGACTCCATCTCAAAAAGAAAAAAGAAATAAAAATAAAAAGTCATGACCAGCTATTTTGGGAGAACTGAA
ATTACAACTCTATCTGAGAAAATAAAATGACAGGACTCCACAGAATCCATAGATAAAAATTTAACTGAAGAGGAATATGGAACAGACTAAAGGAAAAATT
TTATCAAGCTGTAATCTTTATACTTGTGCCTGAGGCCAGAACTTGAAACTGCTGAAGACAGTGTTTCTCTACAAATGTACACAGGCACCCCATTTTGATG
CACAGATAGGTGTTTATTTCTTTTAAGAATAGCAGCTTTATTGAGATAAATTTCACATATGATACAATTCACCAATTTAAAGTGTACAAGTCAATGGTTT
TCAGTATAATCAGAGTTGTACTACCATCACCATAATCAATTTTAGAACATTTTCATCACCGCCCAAAAACCACTGTAGTCTCTCCCCAGCCCTCCACTCC
TGGGAACCATTAATGTACTTTCTGTTTCTATAGATTTGCCTATTTTGGATATTTTATGTAAATGGGATCATACAACGTGTGGTCTTTTGTGAATAGCTTT
TTTCACTTACCATAATGTTTTCAAGATTGGTTCATGTTGTAGCAGGTATCAGTCCTTTTTCCTGTTTATTGCCAAATAATTTTCCATTGTACGGATAGAT
CATATTTTGTTTATCCATTTGTCACATTTTGGTTGTCTATCAGTTGATAGATATTTGTGGTGCATTTAATTTTTGGCCAATGTGTAAAACTTATTTTGCT
CTCACTGAGGCTACATACTGTTACAACAATGCTATTTGGTCAACTTGACTGAGCTGGCCTCATAAGTTACAGGTTGCTCATTGTTAGAGATGAGACTTTA
GACCAGACTGGACAACATAGTGAGACCCTGTCTCTACCAAAAAGAAAAAGAAAAATTAGCCAGATATAATGGCATATGACTGGAGTCCCAGCTACTTGGG
AGGCTGAGATGGGAGGATCACCTGAGCCCAGGAGTTTAGGACTGCAGTGAGCTGTGATCGTGCCAATGCAATCCATGCTGGGCGACAGAGTGAGACCCTG
TCTCAAAACACAGAAAGAGGGATTTTAGTATAACATTCAGCCAGTGCCATATTGGGAACCCACAAGAATGTACTTTAAAAAATATGTCAAAGAACGTGGT
GAGGGCTGTAATAGCTGCTATTCAGGCAGTAATGCAGTGCTGAAGGGACATCAAGCAAATAGTGTGATGCCTGTGGGTGCAATGTTACTCCTTCCCTTAG
GTTGCCAAAAAAATCAATACTTCATAGCATTCCTGAAACGAAAAAGCTTATGAACCATTGTGTTTAGGGCGTAAGCTATCTATTTTGGGCTACCCATCAC
AGCTTCTCTCCTTTGGTAGAATAAAGTGAACTGAACCACCATG

Expression



Full and truncated open reading frames discovered in TCONS_00249092

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.