Detailed information on ENST00000609084

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000441159 family with sequence similarity 115, member C protein coding ENST00000609084 711 382 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, member C novel protein coding ENST00000609084 711 382 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, member C novel protein coding ENST00000609084 711 382 UTR3 Trans

Sequence

>TCONS_00225248 (1692 nt)
TCCCAAAATGCTGGGATTACAGGCGTGAGCCACTGCACCTGGCCAAACTTGAAGAAATTATTTCTAATCCCCGGTCACAAAGAAATTCCCTAATAGATTT
TTTTCTCTAAACTTTTTAAACATTTGCTGTTCACATTTGCGTTCTTAATCCTTCTGGAGCTGATTCTTGTATATAGTGTATGGTAGAGATTCAGTTTTTT
TTTCTTTTTGGAAGTCCAGTGTCTTAAATCATTCATGAAGGAGTCCATTTCCTGCACTGTGGTGCAATGTCGCCTTGCTGATCTATCCCCTTCCCCACAG
GTGGGGTGATTTTATGGGCTGTCTTTTCTGTTCCTGTAGTCTGTGTATCCCTGCACTCTTGCCAGATTATGTTAATGACTATTGCTTTGTAGTCAGTGTT
GAGGTCCCTAAAACAGGGGCCCTCCACCCCTGGGCCTCCCGGGCCTCCCGTGGCCTGGAATGGGGGCTCCACAGCAGGAGGTGGGGATTACAGCCTGAGC
CCCGCCTCCCGTCAGACCAGCGGCAGTATTAGATTCTCATAGGGGTGCAAACCCTATTGTGAACTGCACATGGAAAGGATCTAGGTTGCATGCTCCAATG
AGAATCTAATGTCCCCTGCCCACAGCCCGTGAAAAATTGTCTTCCACAAAATCAATCCCTGGTGCCAAAACATTTGGCCCTATAACATGATTCTTCAGGA
ATGTTTTAGGTATTCTTGCCCTTTTAGGACTCCATTTAGAAGCATCCCCTCACATTTGGAAAAGTGGAAAACCTTGTTGAATGAGCTGAAGTGGTTAAAA
TGATTATCATAAAGGTAGAAACCAGTAAGTGCTCCATATACACCATGGAATACTATGCAGCCATAAAAAAATGAGTTCATGTCCTTTGCAGGGACATGGA
TGAAGCTGGAAACCATCATTCTCAGCAAACTAACACAGAAGCAGAAAACCAAACACCACATGTTCTCACTCATAAGTGGGAGTTGAACAGTGAGAACACA
TGGACACAAGGAGGGGAACATCACACACCGAGGCCTGTCAGGGAGTGGGGGACAAGAGGGAGAGAGAGCATTGGGACAAATACCAAATGCATGCACGGCT
TAAAACCTAGATGACAGGTTGATGGGTGCAGCAAACCACCATGGCACATGTATACCTGTGTAACAAACCTGCACGTTCTGCACATGTATCCCAGAACTTA
TAATAAAAAAGAAACCAGTAAGTGCTCAATAAATGTTACTAACATCTATTTCTTCATTCATTCTTCAACCATTACCCACTGAGTGCCTATTTGGATACTT
GGCTTAGTACCTGGGTGATGAAATAATCTACAGCAAACCCCCATGGCATGAGTTTATAACAAACCTGCACATGTATCCCCGAACTTAAAAGTTAAAAAAA
CAGAATCTGCACAAGTCTAAGCTACTTCCTTGAGGAAAAGACTCGAGCTGAGATCTCAAAGAAGAGTAGAAGTTGCAGGGGTAAAGAGGCCAAAGAAGAG
TGTCTCAGATGAGAGCGGCACGTGCAAAGGCCCTGTGGTGGGAGGAGCCTGGTAGCTCTGAGAAACTCCACAAAGGCACGGTGGTGGCTGGAATGCAGAG
ATGTGGGGGCACATTGAAAACCTTGTTAAAGTGCTTAAAATGATTATCATAAAGGTAGAAACTAATAAGTGCTAAATAAATGTTATTCTCGTC

Expression



Full and truncated open reading frames discovered in TCONS_00225248

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.