Detailed information on ENST00000610021

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000610021 515 254 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000610021 555 243 noncoding Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000610021 524 241 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000610021 524 241 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000610021 637 251 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000610021 561 253 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000610021 572 254 UTR3 Trans

Sequence

>TCONS_00116668 (2239 nt)
GGCAGGGAGGCGGAGCTTGCAGTAAGCTGAGATGGTGCCACTGCACTCCAGCCTGGGCAACAAAGCGAGACTCTGTCTCAAAAAAAAAATTGTGAAGGCT
TCTCTGATTTTTTTTTCCAACAGTTGTTCTGAATCTTTAGCATGTCCAGTAATTTTTTAATAACTTTTTATTATTGTAGTAAAAACATAAAATTAATGAT
CTTAACCATATTTAAGTGTACAATAGTGTCAATATTCAAACATATTATTCAAAAAATAATCAAAATATAAAAGCATTTTAGTGCGATAGTATTTATTGGA
GTATGTATAGCAGCTACTCCAGCCACAGTTTTCTTTCTCTGTAACACTCAATGATTCCTGAAGTAGAAAGATTCCCAGTACATATGTTTAAATGAATGCT
ATTTTTAAAGATACCTAATCCAGATGGTATGGCTAGGGCCTATTTTATAGCCTGTTTAAAAAAATAAAATAAAATAAAATTGGGTGGTTTGTATGTGGTA
GAAGTGAATTCCAGCAAAAGGAGAATTCATTCATTTAGACCTTTTTTTTTGTTTGAGACGGAGTCTCACTCTCACCAGCTGGAGTGCAGTGGCGCAATCT
CAGCTCACTGCAAGCTCCACCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCACCACCACGCCCGGCTAAT
ATTTTGTATTTTTAGTAGAGAAGGTGTCTCACTGTGTTAGCCAGGATGGTCTCAACCTCTTGACCTCCTGATCCACCCACCTCAGACTCCCAAAGTGCTG
GAATTACAGGCATGAGCCACCACACCCAGCCCATTTAGAACTTTTTACTGAGCACCTGCCATGTGCTCGACACGTGATAGTTGTAGAGGATACAGAGACA
AATAGACTTAGTCCCTAAGACTGTGTGAATGAGCATGTGTGTATTACAAAGTATTGGCAAGATCTCAGAAACGTGCTTAGAAAAGTGCAGATGCACTGTT
ATTCTTGGCCAATGCAGCTGAGCCAGGTGTAGGTGGATGACTACCCCAGGATGTTGAGCTGAGAAACAGGATCTCAGCCTGAACCCAATGTAGCTCAGCA
GATGTTTGAATTATGTGATCTCCAGCTTTTGGGAAAGATCTGAATGTAAGAGGAACTTAAGAGAATTAGCATGATATTTTAAAGAGAATAACTGCATTAC
ATTCTAACAGCAGACCTGAGTCGGAAAACAAGTAAAGAATCGATGTATTGGTTTGCCGATGGAAGAGCTTCAGTGAGATCTCAGACCCTGACCCTGCAGT
GAGCCTTGGCAATGATTGACAGGGAAGTTTGTAGATAACGCAGAAGTAGATTAGTGTGCCACTGCTCCAGGCTGAAAATCAGAAATGAAAGCTAAAATAC
ATTTGTACATAAGCTATACCTTCAATTGATAGAGCAAGCTGTGTGACTCAAAACAGCCTGTACAGAAGTACGATGGACCAGCTGGAAGGTATCAATAGAA
GATAAGGAAAAGTTAACTCTTGACACCAGGGAAGTCAACAAATTTCAGGACAACAGTGACCAATGGTTAAGATGGTGACTAAGTGTAATCAGAAAAAAAT
CTTTAACTCCAAGTTTAGACTAGCCAGTTTGTTTAATTGGATTTCTCTGGTCAAAACCTAAACTATTGGTGCTTTCTAACCTGTGGGGATCAGTGTGCAT
AGACCATTTTGCCCTCGATTTCAGCATAACATAGTAAAAAGACTGGGTTTTAGATTCAAAAGTCATGGGTTTGTGATACAGTGTACTTACTGATTATGTG
ACGTCAGTTACTTCTCTGAACCTCTTTCCTTCTCTATAAAATCATAATGCTTCACTGGATTAATGAAATAAGATATTTGTGAAAAGAACTCTGTAAATTA
TAAAAAGTTAAAAACTTTTACATATAGCACATTATGTGACTAGTAAGTACTGCTGTGTCTTACTAGCGCAATTTTCTGTGGCAGCATTGACACGTATCTC
CTAAAAATATAAAGTTCCCCACGTTTACAAGCAGCATGATAGGTTCAGGAAGAGGAGGTAGATGAGAGGTAACATCTTATTATTTATGTAATTATGGGCT
CCATAAGTTTATTTTTTAAGCACCATATATGTGTGTGTTTCAAAATAAACATAAGGCATCATATATTTAAACATATATAACCATAATGCTTGTATTTATA
AATCATTTTCCAAGAAAGAATAAATCAAAATTTGAAATTC

Expression



Full and truncated open reading frames discovered in TCONS_00116668

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.