Detailed information on ENST00000610159

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000610159 567 302 UTR3 Trans
ENST00000338758 parvin, beta protein coding ENST00000610159 609 420 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000610159 510 305 CDS Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000610159 614 301 CDS Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000610159 524 271 UTR3 Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000610159 503 263 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000610159 524 319 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000610159 567 302 UTR3 Trans
TCONS_00175015 copine IV novel protein coding ENST00000610159 638 436 UTR5 Trans
TCONS_00175016 copine IV novel noncoding ENST00000610159 638 436 noncoding Trans
TCONS_00222612 carnitine O-octanoyltransferase novel protein coding ENST00000610159 517 298 UTR3 Trans
TCONS_00222619 carnitine O-octanoyltransferase novel protein coding ENST00000610159 517 298 UTR3 Trans
TCONS_00222623 carnitine O-octanoyltransferase novel protein coding ENST00000610159 517 298 UTR3 Trans

Sequence

>TCONS_00222623 (5333 nt)
AGACAACTGAGAGGAAGGAGGTACCACGGGCACTCTCTCGCGAGAGGGCCGCAGAGCCGCCTTTGACGGGGGCGTGTACCTGGAGAGCAACGGTAAGGAC
GGAGCCGACGGCTCCGGCGTCGGGTCGGTTCCGGCATCGACGTATCGTTTGGTCGCCCCAGAGAGGAGACAGGTTTCTTCAGCTTGCCGCTGAGGATGTG
GCATCGGCTGCGCTCACCGCCGCCGCCTCTGTGAACTGCGGGAGTTGGGACAGCGGCCAGGGCTAGATGGGTGGGACGCGAGTCCTCGCCGAAAGCTTGC
CCTGTGCGGGGCGCACTTGGAGGCGAGCTCTGGGCCGTGGCGAGTTTTGCAGCCTAAGGTCTTGGCAGGCGCATTGCTGTGGGCTGCCGGAGAGCAGGCT
GGAGTTCGAGACCGCCCACCGGAGAGCAGGCGAGAGTTCGAGGCCTAGGTACAGCGCATTTCGCTAGGCATCCCCAAGAATATCCGCGTGATCCTTGTGG
CCAGAGTTTGTTGAGCTAATATCCCCAGCCCAAACAGTAGAGCACATCACATGTCGGCCACCTGGGAGCGTTGAACCTGGTAGTTACTAGGCGCCCCTGG
TGGAAATAAAACTCATTATGCCCTAGTTATGTCTTAGTGCCTGGGTGACGATGATGTAGCGGTTAAAGATTAACTGAGCGCACTTAGAGGTTGTCTTTGT
CTACCTAAGGAAAATATCAATAGATTAAACCCCCAACCTTAAAGAATCTCCGTGAATTTTTCTGAGGAAACGTGCAATATTGTCATACAAAAGGCCCCAA
ATATGCAAACATTGCTTTTTGTTAAAAGTTTGTTTTGTTTTGCAGTGACATCTGTTTGAGCAGATGAATATGCCATTGGGAAAGTCAAGGACTGTCGGAG
AGGAGGACATGGCAGACCTTAACTAAAGTGAGGGGGACAGTAGAGCACTAAAAGTTCTAGGAAAGGAGATGAACTGCTTATTCCATCAGATGAAAATATA
GTCAGAACAGATGAGTAGTAGAACTTAAACATGCCCGGAGTTGCCAGGAATTTGCAAAAGCCTTGATATAATTCCTGTTGCTGTAGAAAGACTTTCTACA
GTCACTAATATATCAAGTTATGTTCACTAGAAAAAAAGTTTACTTAGTTTATAGAAATGGGCTGAAAAATCCTAATTACTTATCTGTGAGGTTATTTTCA
TGAAGGTTAATCATCCAGAAACTATTAGAGAGCCTCGGAATATATTTCTTCTAATCTGCTCTACCTATCCCATTCAAAGGAGGGAATCTGAAGATTTAAG
GACAAAGAGCAGTTGAAAACTCAGAGCTGTGGTTAATGGGAGAATTTCAAGGATGGTGAAAAAAACTAACATCATTGCATCCCTGTTTTTTGTATTCTGG
ACTTTTTAGTTTAGCTCTTGGTAAACTACATCAGAAATTCTTTATGCTAACTCTAACACACATTTTGGGGTATTGCTAATTTAATCTTTGAATACTGTTT
TTGCTGTTTCATGATTATATGTTATGTCCTACCAGCTAGATTGCCAACTCTTGACTACTGACTGGAAGTTTATTGTTTATTCAGCAAATAATGAATTAAG
TCAGTGAAGTGAGAGATTTCGTGTGTAAGGATTGTTAACTTGAACATTTCACCAGTTACACACAGTTCAGCCCTACTTAAATTTTAAAAATCATTGTTGG
CACTTGACATTGTTATGAGGAGTTTTGTATTTTCAACTTGTATTTTGAGAGTGTCCTCATGTGACTGAAGTATGTGCTACTCTTCTTAATTGAATAACCC
CAGAATCTCCAGAATTGATAATTGGAGGAAATTCTACTGTTGGAAAGAATGGATGGATTATACAGCCCTGTTTTTTGACTGTTCATTTTGTCCTTGGAGT
CACTACCACTTGGCCTCAAAGTGTGAACATGTAACCCTTTCCTTAATACTTTGCTACACAGCTGAGCAGAAACTGTAAATTTGGATCCTTTGTCAGTACA
ACTTAAAATGGAACAATTTCAATGGCTTAGGGTAAGATAAGTATGTAAAGATACTTTTGTAATAGAAGAAAAAACATTGGATATTAAAATCACACAGTAG
TACCTGGGTGTGGTGGCTCATGCCTATAATCCCAACGCTTTGGGAGGCCAAGACAGGAGCACTGCTGGAGGCCAGGAATTTGAGACCAGCCTGGCCAACA
TGGTGAAACCTCGTCTCTACCAAAAAATACAAAAATCAGCCAGGTGTGGTGGCACATGCCTGTAATCCCGGATACTCGGGAGGCTGAGGTGGGAGAATCG
CTTGAACCAGGGAGGTGGAGGTTGCAGTGAGCTGAAATCGCAAAACTGCACTCCAACCTGGGCAACAGAGTGAGACCTCCTGTCTCCAAAAAAAAAAAAA
AAAAAAAAAAAAAGTGGGTGTGGTTGTGTACACCTCTACTTCCTGCTACTCAGGAGGCTGAGGCTGGAGGATCTCTTGAGCCCAGGAGTTCAAGTCTGCA
GTGAGCTATAGTTGCACTGCTGCACTCCAGCCTGGGTAGCACAGCGAGACCCCCATCTCTAAAACATAAAAGTAAACAGGCTGGGTGCAGTGGCTTACAC
CTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGTGGATCATGAGGTCAAGAGTTGAGACCAGCCTGGCCAACGTGGCGAAACCCCATCTGTACTAAAAA
TACAAAAATTAGCCAGTCGTGGTGCCAGGTGCCTTTAATCCCAGCTATTCAGGAGGCTGAGACAGGAGAATCGCTTGAACCTGGGAGACAGAGGTTGCAG
TGAGCCAAGATCATGCCATTGCACTTCAGCCTCGGGGACAAGAACAAGACTGTGTCTCAAAAAAAAAAAAAAAAGTAGAAAACAGAATAGCATAAGGATA
ATCTTATATACAAAATAAGACTACTCAATTTCTGAATTTTTTTTTTAACTAGATATGCCACCTCCTGATGACAGTGCCCATTTCGTAACTTGTCTTACTC
AGAAACAGCTCTTAGATAATTTTACTCTTTAAGTTCAGGTCTGAGCACAGAGGACAAAGAATTCCCTTGATTGCCTATGAAAGAAAGGATTCTCAACCTT
GGCACTATTGACATTTTAAGTCAGATAATTCTTTGTTGTGGAAGGTTATCCTGTGCATTGTAGGATGTTTATTTTATCAGCATCCCTGGCTTCTACCCAG
TAAATCCCAGTAGCACCCCACCACCAACCAAAACTGTCTCAAAATGTTGCTAGATGCCCCTTGGGGACAAAAATCCTCTCCCTCCCTCCTCCTTGAATGC
CACTGGCACTCCTTGAGCCTACAGAAGGGCTCTTCTCACAAGTTTGATACCCTGTACCTCCCAGTTGATAGTGGGAATTACTTCTCCTTTGAAGACACAA
TTCCAGTTACCCTGAGAAGTATGGCATTGGCCTTGCTGGCCTCCACCAAATTACTATATCACTGTGTTTGGTAACCCCAGACATCATACTAGGGCTTTAA
TTTCAGTATATAAATAGTAAATTAGTATCCTTGTATAGGTTAGCTTAATGAGTTTCAGAATTCTTCAAGTCATATCTTCATAGGTAGGATCACTGTGGAG
TTAATGGCATTTGAACTATGTACTCAGTACTATGCTAGTGGTTGGTGCAAGGGGAAGATACAAAATAAGGTGTGATTTTAGCCCATGAGGAATTTATACT
TTATCTGCAGAAGCAAATTAATATGGAACCGTTAGTGAACACCTGGATAAAACAGAATGCTAAATTTTACCCTAGAGGTGCTTGGCCTGGACTTCAAGAA
TTCTAAGTGAATTGAAGTATGTTCACAGTAAGAAAGGTTAAAAATGGCTCTGCCCACTTGTAGGCAGATGGGAAGCTAGGATGGCAGACTTGCCAATATT
TGATATATGTAAAAAGTGCAATCATGGCCTCTGTTGTTTCCTCTTTTATCTCGTTCTCTTTATTAGTCCAGGTTCTCTAGAGGAATAGAACTAATAGGAG
ATATATATATATATATATATGGAGTTTATTAAGTAGTATTAACTCACATGATCACAAGGTCCCAGAATAGGCCATATGCAAGCTGAGGAGAAAGGAAGGC
AGTCGAGTTTCAAAGCTGAAGAACATGGAGTCCAATGTTTGAGGACGGGAAGCATCCAACATGGGAGAAAGCTGTAGGCTGGGAGGCTAAGCCAGTCTAG
TCTTTTCATGTTTTTCTGCCTGCTTTATATTCTGGTCGTGCTGGCAGCTGATTAGATGGTGCCCGCCCAGATTAAGGGTGGGTCTGCCTTTCCCAGCCCA
CTAACTCAAATGTTAATCTCCTTTGGTAACACTCTCACAGACACATTCAGGATCGATACTTTGCATCCTTTAATCCAATCAAGTTGACTGTATTAACCAT
CACAAGTCCACCACTTGTCAACTTAAACACATACATATCTCCTGAGATCATTCATAATCTTCAAATAAAGACAATAATAATGTCATAATTACACCTAATA
CAACTATCCTTTGTACAGCTGGAAACACACCAGTCCCCAACCCAAATGCTATTACATAAAGTTAACAATACTTAAATGCTGATATGAAGTAAATCTTAAT
GTCCCATGATAAAAGGAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGAGTAATGGCTTTTGACAGTAATAGAGGGT
CTCAACCTGATTTTTCTTAAGTTTGCATAAGGCTTAGGAGAGGATAAAATAAGGCAGGATCTAGAGATTGGTGAGGAGAAACGGAAGTCCTCATTCTTGA
CAGCTCTCAGCACATGCAGCCCTCCCCACACACACAGTCACACTCACACACACTCACAACCAGATTCACATTCCTACCCATGCACACACTAACACACACT
TGTGCACTTAAACTCGTGCACTTACACATTCACATTCATATACTCACATGCACACATTCAAAACACACACATACTCTACAAACACTCATGTTGCAAAAGG
GGATTTGTAAGCTGAATGTTTAGAACTCAGAACACATATTTTCACAAAAATAATATTATGGTCGGGCGCTGTGGCTCACGCCTGTAATCCTAGCACTTTG
GGAGGCTCAGCTGGGCGGATCACTTGAGATCAGGAGTTCAGGACCAGCCTGGCCAACATACTAAAAATACAGAAATTAGCCAGGCATGGTGGTGCATGCC
TGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAAAGGTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGACTG
GGCAACAAGAGCAAGGCTCCATCTCAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00222623

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.