Detailed information on ENST00000611541

lncRNA-RNA interactions

Number of interactions: 17

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000611541 556 253 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000611541 560 240 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000611541 560 240 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000611541 628 251 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000611541 624 259 UTR5 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000611541 601 258 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000611541 601 258 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000611541 613 251 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000611541 609 253 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000611541 609 253 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000611541 609 253 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000611541 609 253 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000611541 609 253 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000611541 609 253 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000611541 609 253 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000611541 611 257 UTR3 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000611541 601 255 UTR3 Trans

Sequence

>TCONS_00235708 (3495 nt)
AGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCTAGTAACTGGGATTACAGGTGTGTGCCACCACGCCCAACTAACTTTTGTAATTTTAGTAGAGACAAGG
TTTCACCATGTTGGGCAGGCTGGTCTAATTAATTAAGCTTTTTAAACAATTTAACCAAAACAAAATTCTGGCATTAGATTCAGCATATCAGGAGGTACTC
TTTGAAGACCATTGCATTTCTTTCTTTTTCAGTAAAATGAAGGGGAAAAAAAGTGTGTTGACCTGAATTGATTTGATATGGGGAAGAGGCCTTTTAAGAT
CAAGTCCTTTCTTTTTGTTACAAAGTTACCTTGGTTGAACATCATATTTTATTTGCATTTTATGCTTTTAGTTATTCTGTGAACTTTTCTGTACATCTGG
TTTTGCTTAGTTTGTTCATATTTATTTCTCTTACTAGATAGTAAGTTCTCTGAGAGCAGAAATTTGTTTACTACCCCAGCACTTAACACGGAACCTTATT
AGTTGGGTTCAATAAAAATACATTGACAAGAATTTGAGTTTTTATTTTATACTCCTATAGGACTCAGAAATAGTATCCTGATACTTAATAGGCAGTGGTT
ACTCAAAATCTGTACCAAAATCCAAAGGGTTTTAACTTAATTCGTTTTCTATAGGGAGGTATATCATACAAAGAGAATGCAACATGTTATCTGTGTAAAA
TGGACTTCTGACAGCAAGTATATTATGTGTGGATCTGATGAAATGAACATTCGCCTGTGGAAAGCTAATGCTTCTGAAAAATTGGGTGTGGTAAGAGAAT
TCATTTTCTTTCATTGTCATAAAGCTGATTTCTAATTTTATTAGATATTACATTATGAAAATTTACTTTTAGGTATTTTTGGGTATTTTGATTAAATTGA
CATAGCTGTGATAAAAAAAGCAATAAATGGACAAGGTTGTATTGATAATTATTTGCTTCATTCTGATCTATTATTGTAGACACTGTACATTCAAATTGAC
ATTTAAGACCTTCAGAATGCCTTTGTTAATTCAGATGTTTGATAATATTGAGTCTTACTGGTTTTTTGTGTTTTCCTTGAGGTAGGGACAGAAGATGCAG
GAACTAGAGGCTCAGAACTTAGAGCTCGTATCTCTTGTTAGAGAAATAGTCATCCAGCAACTCAAAGGCTGCAAGTCCCTGGGAGATCTTGTAATATCAA
AGACACAATGGAACATTTAATAAATACAGAAAGCTTCATACTTTAAAAAAGATTCCATGAAAAAATAGCAGGTGTTATCATTGGCTGGTTACCTCCAGGA
TAGGGGATTATGGTTGATTTTGTTTTGTTCTTGATGTTTTTCTAAATGTCCCATATTTTCTATAAGAAACAGAGTGTTTATATTAGAAATAAATATTAAG
TTTAAGAAGGAAAGGGTAAGTGTGAATTATTTTCTACTTAGTCCTGATAGGAAAATCAAAGGCAATTCTGTTTTAGGTTTAATGATTGATAAGTATTGCA
TTGTGCCTAGGTCCATCATTAAATGTTCCTCTAAATCGTATCATCCTTAACATTCGTTAAACAAAGGGTAGTTCTTATGGAATTGGATACTTATTTTTTC
TTTGCTGTTTCACTATGTTTAACTCACCTCTTTACCCACCCCCAAAATTTGAGTGAGTGATTTAGGTGCTTTTCTATGTTATTGATGCCTAGGGAAGGTC
CAACTCAGTGATCCACGTGGCCCTACTCCTTCAGCACTGCTGCTTTCTACTGGGTGGCATCTATCTACATGGCGAGTGTGTTGCCTAAAAGGAAATTCAG
TGCTTGCAGAGCTAGTGTTACTAATATAACCTTGTAAAGTGCAGAATTACATTGGCAATTTTGGTTGCATATCATAAAAGATTAGGTTAGGGGGAAAAGG
GTGCTTTCTAGCTTTTTTATACTGAAGCAAAACAACACACTATTCATTAAGATACCAAAATGTGTATTTTCAGCTTACATCACGAGAAAAAGCAGCCAAG
GATTATAACCAGAAATTGAAGGAGAAATTTCAGCATTATCCTCATATAAAACGTATAGCTCGTCATCGACATCTACCAAAATCTATCTATAGCCAGATTC
AGGAACAGCGCATCATGAAAGAAGCTCGTCGACGAAAGTATGTTTTGAGGCATTTGACTCTATTACCCTTTTCTGACTTCTGCTCTCATCTCACCAAAAA
CAAAGTTAACTGCCATTCAAGGGAGTAGTTTATGTGCTATTATTTAATAGTATGTTAGTGATGTGTTTGAAGACTTCTACAGAAGGCCTTTTCTTTTTTC
TTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGGAGTGCAGTGGCACAATCTTGGTTCACTGCAAGCTCCGCCTCCCGGGTTCATGCCATTCTCCTGTCT
CAGCCTCCTGAGTAGCTAGGACTACAGGCACGCGCCACCATGCGCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTAGCCAAGATG
GTCTCAATCTCCTGACCTCGTGATCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCCCGCCCAGAAGGCCATTTCTTTT
TCTTTTTCCCAAAAAAGGGAAGCAGTGACTATCTGAGAATGGGAGAACTTCCATTACCTGTTTTTGAGAATATGTTTAAAGGACAAACGATGAAAATGAG
TTACCAAAATAAGAAAACACTTGCTCATATTAAAAAATTATTGTAAAAAATGTTTTAAAAAATAATTTCTGATGTAGCTGGAATTAAGAGATTTTGTGTA
TTTTCCAAGTTAAAGAATTAATCTATAGTAGAGCTCTTTTCTTAAGTAAAAAGTGTTCTGATATACTTTATTATAACATGACATCTATCATTTTGGATAT
AGAGCAGAGCTACTACCACCACCACCATTTCCCGTGAAATATTCTTCTCTTTGAAATACTTGAAGTCATGCATGAAATTCTAAGAGCTCTTTATTTTTCA
ATTAGAATATACAAATGGCTCTTTTTTTCTGTCTTTGGGTAGATGTTGCAGTAGAATCACTTTTAGAAATTTTATTAACTGTGGAAGGTTTTTAAACTTA
GTAAAGGACCCTATTAGGTAAATATGATAAGAAGCAATTAAATAAGTAAAGTTGATTTCTTGGTACTAGCTTCCTTTTACCTATTGTCATCGTGAAAATA
TTTTTTTAAATAGGTGTTTTTCTAGTGAAAGAAAATGCTTTGATTTTTCTGAGAAAGTTTTCTTTAAGATGAGTTCCCATAACTTGCTTATATTTTGTAT
ATTTTATTTCTAGGGAAGTGAATCGTATTAAACACAGCAAGCCTGGATCTGTGCCACTTGTGTCAGAGAAGAAGAAACACGTAGTGGCAGTTGTAAAATA
ATTGGTATTCCTAACAATCCTGATGTATAATTATTTGTTACTTTTGATTTGAGAACTCTACAAATAAAAGTGCTGGGACTAGATTAATTGCAAACA

Expression



Full and truncated open reading frames discovered in TCONS_00235708

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.