Detailed information on ENST00000612792

lncRNA-RNA interactions

Number of interactions: 25

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000262031 RNA binding motif, single stranded interacting protein 2 protein coding ENST00000612792 577 307 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000612792 615 302 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000612792 570 340 UTR3 Trans
ENST00000473091 UBA domain containing 2 processed transcript ENST00000612792 555 307 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000612792 580 310 UTR3 Trans
ENST00000579685 adenomatosis polyposis coli down-regulated 1 nonsense mediated decay ENST00000612792 510 291 CDS Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000612792 580 295 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000612792 635 288 UTR3 Trans
TCONS_00046540 sestrin 3 novel protein coding ENST00000612792 525 284 UTR3 Trans
TCONS_00051899 RNA binding motif, single stranded interacting protein 2 novel protein coding ENST00000612792 577 307 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000612792 610 320 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000612792 610 320 UTR5 Trans
TCONS_00075339 latent transforming growth factor beta binding protein 2 novel protein coding ENST00000612792 555 307 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000612792 514 280 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000612792 580 310 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000612792 623 293 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000612792 623 293 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000612792 623 293 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000612792 615 302 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000612792 624 299 UTR3 Trans
TCONS_00204896 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000612792 617 306 UTR5 Trans
TCONS_00205414 prolyl 4-hydroxylase, alpha polypeptide II novel protein coding ENST00000612792 608 303 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000612792 608 280 UTR5 Trans
TCONS_00224726 caldesmon 1 novel protein coding ENST00000612792 539 297 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding ENST00000612792 539 297 UTR3 Trans

Sequence

>TCONS_00224728 (3114 nt)
GACTCTCGCGAGAGCGCGCGGCGCGGTGACTCGTCGCTGAGGGACTTTAAGATTGTAGAGGGGCGCGGAGGGTCCTCCCCGGGGCGGAGGGACACAGAGG
GATTCTAGGGAACCTGCCGTCGCGAGTCCCGCTTCAGGCGGAGAATCTAGGCGGCGGCGGGGCCTCCCTGAGGCGGAGGAGTCGGCACCGGGGCCTGGCT
GCCGGGGAAGGAGAGCACGGGAGCGGGGACTCCTGTGTCTGGCGGAGGGACACGGCGTTCCGGTGGAGGGATCTGTTCCTTGTACCTGGTCCAGGGTTGC
GGTCGGGGATGGAGCGGTTACCCCGACCCTGCGGGACCTTCTTCCTCTGGCGGAGGTGCACGGCGCGGCGTGGTGTTTTTCTGGCGGAAGTATCTGTGCG
TGGCCCCAGGCCCTTCCCGGCGCGGTCTCATCTGGGGCCACTTGTTGGCCCTCGCGTTGGGGAGGTTCATGTGGTGCATCCTGATGAGAAGGGGGGTCAC
AGGGGTCTCGGGGCCAGGGTTCAGCCAGCCAGGCCCCAGCTTGCTCTCTTCTGGTGCTGCCCCTGTCCCTGAATTCATAGACCCGGCTTTCCCTCTCTTG
AGCACCTACTATGTGCCAGGCTGCGCTTTGCGCATGTAGCAGAGGCAACAGTGTCACCTGGGAAGCTGGTTTCCCCCAAAGGAACTCTTGTCTGTCCGTT
GTTGCAGAGCCAGCGCATGAGACCAAGTGTGAGTATCAGGCAGTGCAGCCTTCATTCAGTGGCCATGGAATTGGAGAAGTGGGAGGGTAGCTCGCAAATC
AAGCTCTCAGCTCTTGGAAACTGAGAAGTTACAGGTAATAGGGAGTGTTGACGAAAAGTAAAACCGTGCAAAATATTTGAAGAGATTTATTGTGAGCCAA
ATACGAGTAACCACAGCCTGTGATACAGCCCTCTCGAGGCCCTGAGAACATGTGCCCAAGGTGGTCGGGGTGCAGCTTGGTTTTATGTTTTAGGTTGGCA
TGAGACATCAGTCAAATACATTAAATACATTGGTTTGGTCCAGGAAGGCGGGACAACGCAAAGGGGTGGGGGTGGGGGCTTCCAGGCTATAGGTAAATTT
AAATATTTTCTAGTTGACAATTGGTTGAGTTTGTCTGAAGACCTGGGATTGATAGAAAGGAAGTGTTCAGGTTAAGATAAAAGATAGTGGAGACTAAGGT
TCTTTTGAAGTCTTATGGTGGCTGCTCTTAGAGATAATAGATGACAAATGTTTCCTATTCAGATCTTCAAAAGGTGTTAGACTTTTAGTTAATCCGTTTA
GGATTGGGAGGGCCTGGAAGAAAAACATCTAGCTATGTTAATAGATGTTCTTTACAGATGCACATTTTACCCCACAAAGGATAGCTTTTGGGGGAAAATG
CTGTCCTTTATGGAAGAAATTGCAAAATAGGGCAAGGAAACATGTTTTGGGGTAAAATATTTTGACTTTCTTTTTGTCACGTAATGTTATGCCAGAGTCA
GAATGGAAAGTAAGTCATCATATATAGGATTAAATAAAACCCATCTGATGAGAATTTATGGTTTGTAGGTCATGACTCCCCAGATCCCTTAGATAGGAAT
TTGGGCAGGATTAAAAAAATCAAGAGTTTAGGCTGGTCGTGGTGGCTCACGCCTATAATCCCAGCATTTTGGGAGGCCAAGGCAGGTGGATCGCTTGAGG
TCAGAAGTTTAAGACCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACACGCCTGTGATTCTAGC
TGATTGGGAGGCTGAGGCATGAGACTCAACTTGAACCCGGGAGGCGGAGGTTGCAATGAGCTGAGATTGTGCCACTGCACTCCAGCTTGGTTGACAAAGT
GAGACTCTGTGTCAAAAACAAAACAAAACAGAAAAAAAAAACAAAAGAATCAGAGCTTAGTCGTCAGGTGTCCTTAATGAAGGGGCTGGGCATTAAGAGC
AAGGCGAGGAGGCAGAAGGAAAGCTTGAGCCCAGGAATTGGAGACCAGCTTGGGCAACATGGTAAGACCCTGTCTCTAAAAAAAATAAAAATTAAGAACA
AGAGGAGGAATATTCATGTTTTTTCTTGGGAAGGGAGGTAGATTTTCCTGGAATCAAGGAGCTGCCCCTTTTTTTGTCCTTTTTTTGGTCTCTTCGGGTC
ATCACGGTGATTGTCAACTGTCATGGCAACCAGTGGGAATGTCATTTAGTACTGAAGTTGGATTAGAATGAAGCTAGAGGTTCTTCAGAGGTCGAGTAAG
CTAAGAAGGAACCTATGACCACAGACAACCTGTTTTCTAAAAATAAGCAGAGTTAAATCTGAGTAGGAATTTAGCTATGTCATGGAGGCATTGCATTGGG
TAACAAAAGCCAGGTAGGCGTCCAGCTAAGTCCCCTAGGCCCTGCAACGGGTAACAGCAGTACTGACTCTATGTTAGAGAAAAGCTTGCTTGCTTGAGTA
TAATTATTGTTTTGCCTGAGTTTGTAAACTATTCACTAAAAACAGCCACAGAAAAAAACAGGACCTTCTTCAACAGATAAAACACACAGACCCGCAGCTT
TGGGAACAGGCTGATGGCCCCTGCACAGTCTAGTCACAAGGCATTGACCAAGAAAGTAATGACTAACTGCCCATCTGAGACTGCGCATGATTCACAAGAA
TGTTTCTTTGTTTTGTTTTTTGAGACAGTCTTGGTCTGTCTCCCAGGCTGGAGTGCAGTGATGTTGGTTCGCTGTAGCCTCTGCCTCCTGAGTAGCTGGG
ACTACAGGCGTGTGCCACCGCACCTGGCTAATTTTTGTATTTTTAGTAGAGATGATGTTTGACTATGTTGGCCAGGATGGTCTCGAACTCCTGACCTCAA
GTGATCCACCTGCCTCGGCCTCCCAAATTGCTGGGGTTACAAGTATGAGCCACCGCTCCTGGCCCACAAGAATGTTTTGATCATTATTTCTCCTAATTTT
CCTTAAAATCCCTGGATCTAGAGGCACAACTGAGAAAGGTGGTCTTTGAATGCTAGTGCACTGCCTTTTGCAGGTTGCTGGTTTCTCGAATAAAGCTAAC
TTTGCTTTCACCAAA

Expression



Full and truncated open reading frames discovered in TCONS_00224728

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.