Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000287675 | endo/exonuclease (5-3), endonuclease G-like | protein coding | ENST00000613961 | 525 | 282 | UTR3 | Trans | |
ENST00000378004 | Rho GTPase activating protein 26 | protein coding | ENST00000613961 | 529 | 297 | UTR3 | Trans | |
ENST00000409359 | Rho guanine nucleotide exchange factor (GEF) 4 | protein coding | ENST00000613961 | 508 | 284 | UTR3 | Trans | |
ENST00000448504 | arylsulfatase G | protein coding | ENST00000613961 | 641 | 298 | UTR3 | Trans | |
ENST00000463899 | N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) | processed transcript | ENST00000613961 | 521 | 291 | noncoding | Trans | |
ENST00000482603 | glyoxylate reductase/hydroxypyruvate reductase | processed transcript | ENST00000613961 | 593 | 305 | noncoding | Trans | |
ENST00000552918 | spermatogenesis associated, serine-rich 2 | protein coding | ENST00000613961 | 632 | 283 | UTR3 | Trans | |
ENST00000553127 | spermatogenesis associated, serine-rich 2 | protein coding | ENST00000613961 | 652 | 297 | UTR3 | Trans | |
ENST00000569832 | SSTR5 antisense RNA 1 | lincRNA | ENST00000613961 | 543 | 293 | noncoding | Trans | |
ENST00000620139 | melanoregulin | protein coding | ENST00000613961 | 615 | 297 | UTR3 | Trans | |
TCONS_00009834 | SRY (sex determining region Y)-box 13 | novel protein coding | ENST00000613961 | 644 | 291 | UTR3 | Trans | |
TCONS_00050741 | spermatogenesis associated, serine-rich 2 | novel protein coding | ENST00000613961 | 652 | 297 | UTR3 | Trans | |
TCONS_00085508 | neuregulin 4 | novel noncoding | ENST00000613961 | 691 | 297 | noncoding | Trans | |
TCONS_00088780 | synaptotagmin XVII | novel protein coding | ENST00000613961 | 654 | 286 | UTR3 | Trans | |
TCONS_00089065 | eukaryotic elongation factor-2 kinase | novel protein coding | ENST00000613961 | 605 | 288 | UTR3 | Trans | |
TCONS_00089066 | eukaryotic elongation factor-2 kinase | novel protein coding | ENST00000613961 | 605 | 288 | UTR3 | Trans | |
TCONS_00098643 | fatty acid 2-hydroxylase | novel protein coding | ENST00000613961 | 625 | 289 | UTR5 | Trans | |
TCONS_00098644 | fatty acid 2-hydroxylase | novel protein coding | ENST00000613961 | 625 | 289 | UTR3 | Trans | |
TCONS_00098645 | fatty acid 2-hydroxylase | novel protein coding | ENST00000613961 | 625 | 289 | UTR3 | Trans | |
TCONS_00098647 | fatty acid 2-hydroxylase | novel protein coding | ENST00000613961 | 625 | 289 | UTR3 | Trans | |
TCONS_00105791 | arylsulfatase G | novel protein coding | ENST00000613961 | 641 | 298 | UTR3 | Trans | |
TCONS_00109427 | serine hydroxymethyltransferase 1 (soluble) | novel protein coding | ENST00000613961 | 603 | 279 | UTR3 | Trans | |
TCONS_00118582 | centrosomal protein 76kDa | novel protein coding | ENST00000613961 | 620 | 300 | UTR3 | Trans | |
TCONS_00147093 | ATPase family, AAA domain containing 2B | novel protein coding | ENST00000613961 | 640 | 288 | UTR3 | Trans | |
TCONS_00148387 | reticulon 4 | novel protein coding | ENST00000613961 | 571 | 289 | UTR3 | Trans | |
TCONS_00148389 | reticulon 4 | novel protein coding | ENST00000613961 | 571 | 289 | UTR3 | Trans | |
TCONS_00171086 | glycerol-3-phosphate dehydrogenase 1-like | novel protein coding | ENST00000613961 | 606 | 291 | UTR3 | Trans | |
TCONS_00191796 | G protein-coupled receptor 125 | novel protein coding | ENST00000613961 | 624 | 297 | UTR5 | Trans | |
TCONS_00191797 | G protein-coupled receptor 125 | novel protein coding | ENST00000613961 | 624 | 297 | UTR3 | Trans | |
TCONS_00194652 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000613961 | 611 | 297 | UTR5 | Trans | |
TCONS_00194655 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000613961 | 611 | 297 | UTR5 | Trans | |
TCONS_00199320 | sorting nexin 24 | novel noncoding | ENST00000613961 | 609 | 288 | noncoding | Trans | |
TCONS_00213181 | tubby like protein 4 | novel protein coding | ENST00000613961 | 593 | 300 | UTR3 | Trans | |
TCONS_00213191 | tubby like protein 4 | novel protein coding | ENST00000613961 | 593 | 300 | UTR3 | Trans | |
TCONS_00216910 | high mobility group nucleosomal binding domain 3 | novel noncoding | ENST00000613961 | 601 | 305 | noncoding | Trans | |
TCONS_00235205 | epithelial splicing regulatory protein 1 | novel protein coding | ENST00000613961 | 618 | 308 | UTR3 | Trans | |
TCONS_00235219 | epithelial splicing regulatory protein 1 | novel protein coding | ENST00000613961 | 618 | 308 | UTR3 | Trans | |
TCONS_00235231 | epithelial splicing regulatory protein 1 | novel protein coding | ENST00000613961 | 618 | 308 | UTR3 | Trans |
>TCONS_00235231 (4082 nt)
CTGAGTACTGAAGGGTGTGCCACCAGGGGACCTGCCCTCATCTGACTCTGGGAGGCTTCCCTGAGGAGGTGATCCTCCAAACCAAGATAGAAAGAAGAGA
ACAAAGTTGACCACAAAGCAAATTGGAAAGCATTCTGAGCAAAGGGCCTGACTAGAGAGGAAGGAGAGGTGAGACCAGAGAGACAAGCAGTTCTGGCTAT
ACAGAGCATTGGAGACCAGGGCTGAGCTCCTGCCAACATCCTGAGAGCGAGGGAAGCAGGGGATGTGACCTGCCCTGGTATGTTGCTGTAATCTGCCTGG
GACTCTGGCTGTTCTGTGGAGAAATCATTAGAGCAGCATGGGTAGACAGGGAGGCTAGTTCGGAAGCTTTGTTGTAGTGGACAGGATTTGGACATGATCT
GCATATTCTGGTTAGTCTTGGTGCTGGATGGAATGAAGAGGGGCTGGAAGAGGGCAGCGTTCAGGATGACCCCTGAGCTTCTGGTTTGCCTTACTGGTGA
GATGGCAATGCCATTTTCAGAGCTGGGGAGCCCTGGAAAGGGGCCAGGTCTGTAAGGTAGACCCCAAGTCCAGTGGTAAAAGCTGAGACATCCCAATGCA
GATGGAGAAGAAACAGCTGAAGGCACAGCTCCAGAGCACAAGGTGAGAAATTATGGAGACCAGTCCAGGGCTCCAGGGGGCTCCCAAATGGAAATATGGA
TCCAGATGTTGACAGGCTTCTGGGGCATTTTTAGGCGAGGGGATGGCTGAGGACAAAAAAATCAAGCCCAAGGAGCACCAACATTTGGAGATTAGAAAAG
AGAAGAAGAATCCTCTGAGAGCACTGAAAAGAAAGAGCCGGGAGGTGTCTCAGCAGAAAGACAGGGTGGTCAGCAGTGGGTGTGTGCAGAGAGGTCAGGA
GGACCAGGGCAATCCCTGAACTACTCCAGTGTGCACCTGCACAACCTCCATGGTGCCTCTGGAATTGGGTAGCATGGTGGCCCTGCTGATGAGCACCCCA
AGGGGCCATTGGGGGACCTCTGAGAATCTCTGCCAGAGCAGTTTGGGTGGGAGTCGATTAAGGAAAGAAGCAGCAAGATCCAGGACTTTTAATCTTAAAA
GAGAGAGAAATGCTGGCAGATGAACATTCTGAGGATAAGGAGCCTGAGTAATTGAGCGATTAGGGATGGAGACAATTAGTGAGATGAGCTCCCAAAGGGG
CTGGGATCAACTATGGAGGTGGATAAATTAGTTTGGGGCAATAATGTGTATTTGACTGAATGGGGCAAAATTAAATTATGTACCTTTTAGAGAGTAACTT
GATCTCCATGTTCTTTTGGGAGCTTTTATCTGACCTGTGTACCGACTATAGTTCTAATTAGCACCAGTTTTATCCTGTCTTTTGGCTGGGATTATGTCTT
ATTATTTTGTGTGTTTCTCAGCACCTAGCAACAGGTAGTAAGCTCCTTGGGTGCCGAATCAGTATTTTCTGCCTTGGAATCAAATGTCAGAAGTCAACAC
TCAAACTTCTTTTGACCAAAAAGATTCTACGACAATTATCCAGAAGTTACAATGCAAGGAAGAAGAATTGGATGTTAAGTCTTGCGTAGCAGGGGTTATG
GGGAGTGGATCAAGACAAAGTAGAGGTATCTGCTCCCCTCATCCTTGTAAGCTCCATGCCATTTATCCATGCTCACATTGATCATCTCATACGAGCTTCA
CATTTCCCCACAAGAAATGGAGCGTAACCCCATTACCTACTCATAGAGGAGGAACTGGAAGCCAGAGAGGGAGATGCCTTATTGACACAGAGCACAAGTG
GCAGGAGCTGGCTTCAGACCTCAGTCCATCCGGTGTGGCAGTCCCTCTTCCCAGGACCAGGTGGAGCTGGAGAGAAGGAGGAAGAGGAGTCTGTGAGGTC
CAGATGGAGATGCTCGGCAGGCCCTTTCCAAAGGTGGGAGGTGAGGTCGGCCTGGAACCCTACTGGATGCTTAAGTGTCCTGCCGCACTGCTGATGAAAG
CAGGTCCCCACCGCAGTGTATATACATTGTGTGTTTGCATCTAAAACGTCTATAGTTGTTTGAAATGTTTAAATCTTTAACCCATCTGAGATGTGTTTTC
ATGTATGGTGTGACACAGAGCTCTAATTTGCTCTTTTTGCAGATATCCAGTTTGCTAAGCACCATTTATTGTTCCAACACCATCTTTTCTCTCAATTCCC
TGTCTAGACTCCGGTTCTGTTGATCTATTTGTCTATTTCTGAGCCAATAGTACATATTAATGAGCAAAGCTTAATAAAGTGTCTTATGGCTTGATAAGAT
AAGCACTCCACCCTTCCCCCAAGGCCTTTATTCCTTTTTTTTCTTTTTGAGACGGAGTCTTGCTCTGCCGCCCAGGCTGGGGTTCAGTGGTGCAGTCTCC
GCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACGCGCCACCATGCCCGGCTAATTT
TTGTATTTTTTGGTGCAGATAGGGTTTCACCATGTTGGCCAGGCTAGTCTCAAACTCCTGACCTCAAGTGATCCACCCATCTCGGCCTCCCAAGGTGCTG
GGATTATAGGCATGAGCCACCGTGCGCAGCCCCTTATTCTTTTTTAAAATTGTCTTGGTCATATTGCACATTTACTTTTTCAGGTACATTTTATAATCAG
CTTGTCAAAGTTCTGTGAACAAAATGTCTGTTGGAAGTTTGAGAAGAATTGCATTGAAGGGGAAATTAACATCTTTAGAATATAAGTTCTTCCCATCTGT
GGACATGGTGTCTGTCTCTTTTTAATCAGAATTGTATTTGTTTTGTTTTGTTTTGTTTTTAATGCCTTTTAATAAAGGTTGGTTGCTTTTGTCATAAAGA
TTTTTCACAGTTCTTAATAGGTTTATTCCTGAAAACCTTATTAGTTTTGTTGCTTTTGTGAGTGGAAAAACTTTCCCTTTTTTCATTTTGCTTTCCAAAT
TTTAATCAGTTTACTAATCACTATGCTTCATTCACAGACACACACACAGCAAATGTGCTTTGTCCCTGGGCACACAAATGAAAACACAGCACACATGTAA
ATCAGAGCTAATTGGCTGAAAATGAATTAGAATTTTTGAATTAAATTTTAATTATACAAGTAATACATGAATACATTTTCCTTTAAATAAAATTAGAGCA
TTTTAGGTAAAGAAGTCTCTACTGGCCTCCCCAGCCTGACCTCAGGCCCCTTCCCCACTTTAGAGGCAGCTGCTGTTAGGCATTTGCTGTTGATCCAAAA
TGTTCTCCTATGCGCATTGAAACATGTCCTGTGTTCTATTGTTGCTTTTGTTTGCTTGCATAGATGTGGTGGTGTACACACTGGAGGTGCTGCTCCTGAG
CTCAGGGCACCTTACGGGACTCTCCTCATGTCGCGTGTCACCTGCCGCAGCTGGCTCCACTGCCCCTTTCAGCTGGCCGCTGGCAACCAGAACTGATTGT
GCTATGATTTATTTAGTTGTTGCTTATTGATCGACTATTAAAAGGCTTCCAGTCTTGTTTCAATAAGACAAACCTGTAACAGCATCCTTGTACATGCCAC
TTTTGCTCATGTACAAGTGTTTTTCTGGAGCAGATACTTAGAAACAGAATTGATGGGTCATAGAGTCTACACATCTTAAATTCTAATAGTAACTGCTAAA
ATGTTCTTCAAAGTACCTTTCTGATTTAATTTCATGCCAGCAGTATGTGTGTCCATTTCTCCAGACCATCTCCAAGTTTTACATTTTAACCAATCTGGTG
GGTGAAAAATAATATCTTGTTTTAGTTTGCATTTTTCTGAATTACCAGGATGGCTGAAGTCTGTGTCTCCTATCCATTTATATTTCCTTCTCTGCATTAC
TTGTCCAAATCTTTTGCCCATTTCTTTTTTTTAGGGTACGTTGTCTTTTCCTTATTGATTTTTTAGAAGTTCTTTATGTATTTTGTATACTTTATGTGTA
TTGCAAATATTTTCTGTATTGTGATTCTTGTCATTTAATTGTATTGTGTCTTTGGAGAAATCTTAAATTTTGATACAGTCAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.