Detailed information on ENST00000613961

lncRNA-RNA interactions

Number of interactions: 38

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000287675 endo/exonuclease (5-3), endonuclease G-like protein coding ENST00000613961 525 282 UTR3 Trans
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000613961 529 297 UTR3 Trans
ENST00000409359 Rho guanine nucleotide exchange factor (GEF) 4 protein coding ENST00000613961 508 284 UTR3 Trans
ENST00000448504 arylsulfatase G protein coding ENST00000613961 641 298 UTR3 Trans
ENST00000463899 N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) processed transcript ENST00000613961 521 291 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000613961 593 305 noncoding Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000613961 632 283 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000613961 652 297 UTR3 Trans
ENST00000569832 SSTR5 antisense RNA 1 lincRNA ENST00000613961 543 293 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000613961 615 297 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000613961 644 291 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000613961 652 297 UTR3 Trans
TCONS_00085508 neuregulin 4 novel noncoding ENST00000613961 691 297 noncoding Trans
TCONS_00088780 synaptotagmin XVII novel protein coding ENST00000613961 654 286 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000613961 605 288 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000613961 605 288 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000613961 625 289 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000613961 625 289 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000613961 625 289 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000613961 625 289 UTR3 Trans
TCONS_00105791 arylsulfatase G novel protein coding ENST00000613961 641 298 UTR3 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000613961 603 279 UTR3 Trans
TCONS_00118582 centrosomal protein 76kDa novel protein coding ENST00000613961 620 300 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000613961 640 288 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000613961 571 289 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000613961 571 289 UTR3 Trans
TCONS_00171086 glycerol-3-phosphate dehydrogenase 1-like novel protein coding ENST00000613961 606 291 UTR3 Trans
TCONS_00191796 G protein-coupled receptor 125 novel protein coding ENST00000613961 624 297 UTR5 Trans
TCONS_00191797 G protein-coupled receptor 125 novel protein coding ENST00000613961 624 297 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000613961 611 297 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000613961 611 297 UTR5 Trans
TCONS_00199320 sorting nexin 24 novel noncoding ENST00000613961 609 288 noncoding Trans
TCONS_00213181 tubby like protein 4 novel protein coding ENST00000613961 593 300 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000613961 593 300 UTR3 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding ENST00000613961 601 305 noncoding Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000613961 618 308 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000613961 618 308 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000613961 618 308 UTR3 Trans

Sequence

>TCONS_00235231 (4082 nt)
CTGAGTACTGAAGGGTGTGCCACCAGGGGACCTGCCCTCATCTGACTCTGGGAGGCTTCCCTGAGGAGGTGATCCTCCAAACCAAGATAGAAAGAAGAGA
ACAAAGTTGACCACAAAGCAAATTGGAAAGCATTCTGAGCAAAGGGCCTGACTAGAGAGGAAGGAGAGGTGAGACCAGAGAGACAAGCAGTTCTGGCTAT
ACAGAGCATTGGAGACCAGGGCTGAGCTCCTGCCAACATCCTGAGAGCGAGGGAAGCAGGGGATGTGACCTGCCCTGGTATGTTGCTGTAATCTGCCTGG
GACTCTGGCTGTTCTGTGGAGAAATCATTAGAGCAGCATGGGTAGACAGGGAGGCTAGTTCGGAAGCTTTGTTGTAGTGGACAGGATTTGGACATGATCT
GCATATTCTGGTTAGTCTTGGTGCTGGATGGAATGAAGAGGGGCTGGAAGAGGGCAGCGTTCAGGATGACCCCTGAGCTTCTGGTTTGCCTTACTGGTGA
GATGGCAATGCCATTTTCAGAGCTGGGGAGCCCTGGAAAGGGGCCAGGTCTGTAAGGTAGACCCCAAGTCCAGTGGTAAAAGCTGAGACATCCCAATGCA
GATGGAGAAGAAACAGCTGAAGGCACAGCTCCAGAGCACAAGGTGAGAAATTATGGAGACCAGTCCAGGGCTCCAGGGGGCTCCCAAATGGAAATATGGA
TCCAGATGTTGACAGGCTTCTGGGGCATTTTTAGGCGAGGGGATGGCTGAGGACAAAAAAATCAAGCCCAAGGAGCACCAACATTTGGAGATTAGAAAAG
AGAAGAAGAATCCTCTGAGAGCACTGAAAAGAAAGAGCCGGGAGGTGTCTCAGCAGAAAGACAGGGTGGTCAGCAGTGGGTGTGTGCAGAGAGGTCAGGA
GGACCAGGGCAATCCCTGAACTACTCCAGTGTGCACCTGCACAACCTCCATGGTGCCTCTGGAATTGGGTAGCATGGTGGCCCTGCTGATGAGCACCCCA
AGGGGCCATTGGGGGACCTCTGAGAATCTCTGCCAGAGCAGTTTGGGTGGGAGTCGATTAAGGAAAGAAGCAGCAAGATCCAGGACTTTTAATCTTAAAA
GAGAGAGAAATGCTGGCAGATGAACATTCTGAGGATAAGGAGCCTGAGTAATTGAGCGATTAGGGATGGAGACAATTAGTGAGATGAGCTCCCAAAGGGG
CTGGGATCAACTATGGAGGTGGATAAATTAGTTTGGGGCAATAATGTGTATTTGACTGAATGGGGCAAAATTAAATTATGTACCTTTTAGAGAGTAACTT
GATCTCCATGTTCTTTTGGGAGCTTTTATCTGACCTGTGTACCGACTATAGTTCTAATTAGCACCAGTTTTATCCTGTCTTTTGGCTGGGATTATGTCTT
ATTATTTTGTGTGTTTCTCAGCACCTAGCAACAGGTAGTAAGCTCCTTGGGTGCCGAATCAGTATTTTCTGCCTTGGAATCAAATGTCAGAAGTCAACAC
TCAAACTTCTTTTGACCAAAAAGATTCTACGACAATTATCCAGAAGTTACAATGCAAGGAAGAAGAATTGGATGTTAAGTCTTGCGTAGCAGGGGTTATG
GGGAGTGGATCAAGACAAAGTAGAGGTATCTGCTCCCCTCATCCTTGTAAGCTCCATGCCATTTATCCATGCTCACATTGATCATCTCATACGAGCTTCA
CATTTCCCCACAAGAAATGGAGCGTAACCCCATTACCTACTCATAGAGGAGGAACTGGAAGCCAGAGAGGGAGATGCCTTATTGACACAGAGCACAAGTG
GCAGGAGCTGGCTTCAGACCTCAGTCCATCCGGTGTGGCAGTCCCTCTTCCCAGGACCAGGTGGAGCTGGAGAGAAGGAGGAAGAGGAGTCTGTGAGGTC
CAGATGGAGATGCTCGGCAGGCCCTTTCCAAAGGTGGGAGGTGAGGTCGGCCTGGAACCCTACTGGATGCTTAAGTGTCCTGCCGCACTGCTGATGAAAG
CAGGTCCCCACCGCAGTGTATATACATTGTGTGTTTGCATCTAAAACGTCTATAGTTGTTTGAAATGTTTAAATCTTTAACCCATCTGAGATGTGTTTTC
ATGTATGGTGTGACACAGAGCTCTAATTTGCTCTTTTTGCAGATATCCAGTTTGCTAAGCACCATTTATTGTTCCAACACCATCTTTTCTCTCAATTCCC
TGTCTAGACTCCGGTTCTGTTGATCTATTTGTCTATTTCTGAGCCAATAGTACATATTAATGAGCAAAGCTTAATAAAGTGTCTTATGGCTTGATAAGAT
AAGCACTCCACCCTTCCCCCAAGGCCTTTATTCCTTTTTTTTCTTTTTGAGACGGAGTCTTGCTCTGCCGCCCAGGCTGGGGTTCAGTGGTGCAGTCTCC
GCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACGCGCCACCATGCCCGGCTAATTT
TTGTATTTTTTGGTGCAGATAGGGTTTCACCATGTTGGCCAGGCTAGTCTCAAACTCCTGACCTCAAGTGATCCACCCATCTCGGCCTCCCAAGGTGCTG
GGATTATAGGCATGAGCCACCGTGCGCAGCCCCTTATTCTTTTTTAAAATTGTCTTGGTCATATTGCACATTTACTTTTTCAGGTACATTTTATAATCAG
CTTGTCAAAGTTCTGTGAACAAAATGTCTGTTGGAAGTTTGAGAAGAATTGCATTGAAGGGGAAATTAACATCTTTAGAATATAAGTTCTTCCCATCTGT
GGACATGGTGTCTGTCTCTTTTTAATCAGAATTGTATTTGTTTTGTTTTGTTTTGTTTTTAATGCCTTTTAATAAAGGTTGGTTGCTTTTGTCATAAAGA
TTTTTCACAGTTCTTAATAGGTTTATTCCTGAAAACCTTATTAGTTTTGTTGCTTTTGTGAGTGGAAAAACTTTCCCTTTTTTCATTTTGCTTTCCAAAT
TTTAATCAGTTTACTAATCACTATGCTTCATTCACAGACACACACACAGCAAATGTGCTTTGTCCCTGGGCACACAAATGAAAACACAGCACACATGTAA
ATCAGAGCTAATTGGCTGAAAATGAATTAGAATTTTTGAATTAAATTTTAATTATACAAGTAATACATGAATACATTTTCCTTTAAATAAAATTAGAGCA
TTTTAGGTAAAGAAGTCTCTACTGGCCTCCCCAGCCTGACCTCAGGCCCCTTCCCCACTTTAGAGGCAGCTGCTGTTAGGCATTTGCTGTTGATCCAAAA
TGTTCTCCTATGCGCATTGAAACATGTCCTGTGTTCTATTGTTGCTTTTGTTTGCTTGCATAGATGTGGTGGTGTACACACTGGAGGTGCTGCTCCTGAG
CTCAGGGCACCTTACGGGACTCTCCTCATGTCGCGTGTCACCTGCCGCAGCTGGCTCCACTGCCCCTTTCAGCTGGCCGCTGGCAACCAGAACTGATTGT
GCTATGATTTATTTAGTTGTTGCTTATTGATCGACTATTAAAAGGCTTCCAGTCTTGTTTCAATAAGACAAACCTGTAACAGCATCCTTGTACATGCCAC
TTTTGCTCATGTACAAGTGTTTTTCTGGAGCAGATACTTAGAAACAGAATTGATGGGTCATAGAGTCTACACATCTTAAATTCTAATAGTAACTGCTAAA
ATGTTCTTCAAAGTACCTTTCTGATTTAATTTCATGCCAGCAGTATGTGTGTCCATTTCTCCAGACCATCTCCAAGTTTTACATTTTAACCAATCTGGTG
GGTGAAAAATAATATCTTGTTTTAGTTTGCATTTTTCTGAATTACCAGGATGGCTGAAGTCTGTGTCTCCTATCCATTTATATTTCCTTCTCTGCATTAC
TTGTCCAAATCTTTTGCCCATTTCTTTTTTTTAGGGTACGTTGTCTTTTCCTTATTGATTTTTTAGAAGTTCTTTATGTATTTTGTATACTTTATGTGTA
TTGCAAATATTTTCTGTATTGTGATTCTTGTCATTTAATTGTATTGTGTCTTTGGAGAAATCTTAAATTTTGATACAGTCAAA

Expression



Full and truncated open reading frames discovered in TCONS_00235231

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.