Detailed information on ENST00000617199

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367097 tubby like protein 4 protein coding ENST00000617199 527 315 UTR3 Trans
ENST00000382044 tumor protein p53 binding protein 1 protein coding ENST00000617199 531 315 UTR3 Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding ENST00000617199 604 293 UTR3 Trans
ENST00000572705 transient receptor potential cation chan... protein coding ENST00000617199 553 270 UTR3 Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding ENST00000617199 612 290 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kin... novel protein coding ENST00000617199 611 295 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000617199 519 289 UTR3 Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding ENST00000617199 621 322 UTR5 Trans
TCONS_00107851 transient receptor potential cation chan... novel protein coding ENST00000617199 553 270 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000617199 532 271 UTR5 Trans
TCONS_00202516 family with sequence similarity 173, mem... novel protein coding ENST00000617199 607 289 UTR3 Trans

Sequence

>ENST00000617199 (2464 nt)
TTGCCTTCTGCTAGAAGGAAATGTAGGCTACTGGGAAAGGACAGAGCCAGGTCTGTGTGCCTCTCCCTGGAGTCCCTGACACTTGCTGTTTTGGCTTGAA<br />GCCTTTGGCCATTAAAGTTGCCTGTATCCAGGCATGACTGGCCCCTGCTCAGGGCCAAGAGAGGGTGAGTCTTGCAAACCAAGGAAGCCCAGGTACCCTG<br />TCTGCTTCCTTCAGGGTCTGGACCACTCCTTTCCCTATAGGCCTTCCAGTCGGCTGGAGAGTGTTGGTGCATGTGTGCATGTGTGCACGTGTGCATGTGT<br />GTGGGTGGGGCTGAGGTCTGGGGGTACCTGGGATTCCACAAGGGATTCCTCTTTGCAGACATATGGTGTCTTTGGTAAATTAATTATTTAATTCGATGGA<br />TGTTTATTAAGATATTGATTAAGCCCCTCCTGGGTGCTTGGCTCTAGGGAATGATTCCTTGACCTCATGTAATTTGCATTGTAGCAAGGAAGGCAGACTT<br />GAGGCGAGGAGCAGATGACAGAGAGCAGTAACAGCTCTGAAGAAAAGCTAGAGGCTGATGAGATGACCATGACTTGGGGTGAGGGGAGAGAGCAAGACAA<br />GGACTGCTCTGTCGGGAAGGCCTTTGACTGGGGGCCTGAATGATGGAGAGCCAGCCACATGAAAAACTTAAAAACAGCACTGCAAAAAGAGCACTGCAGG<br />CAAGGAATTGGTAAATGCAAAGGCCCTGGGGCATGTTGAAGGGTGGAAGGAAGGCCAGTGGAGCTGGAGCCAAGAGATGGAGGGGCAGCTTGGTGGGTGA<br />AGAGCCCCAGGGACCCGCAGTGTCATCACCTAGGAGCTTCTTAGAAATGCAGACTGAGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGG<br />AGGCCGAGGCGAGCGGATCACCTGAGGTCAGGAGATCAAGACCAGCTTGGCCAACATGGCGAAGCCCCGTCTCTACTAAAAAAATACAAAAATTAGCCAG<br />GCGTGGTGGCAGGTGCCTGTAATCCCAGCTACTAGGGAGGCTGAGGCAGGATAATTGCCTGAACCCGGTCAGAAGGTGGAGGTTGCAGTGAGCCGAGATC<br />ATGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTGTGTCTCAAACAAACAAACAAAAAAACAAAAAAAAAGAAATACAGACTGAAAGCCCCAGCCT<br />AGACTTGCTGAAACATAAGCTTTTTTTTTTTATATCAAGATCCCCAGGTGATCTGTGAGAATTACTCCCCTAGTATCTCATTTTATAGATGGGGAGACTG<br />AGAGCCAGAGAGAGGAAGGGACTTCCTAGAGTGCTGGAGCTGACAGTCCTGTCCCTGCCCTGGTGCCCCTTCCAACTGCATTTTACCAGAAAGGCTGTCT<br />GACTTCCTGGGGAGGCTGAGAGTGAGGAGGGTATGAACCACTAGAAGCAGATGATCTGTAGAGGGGTCTGCGTTGAGCACATTGTGCAGAATTGGTGTCC<br />TCTGCAAAGCTGCCCAGGTTTTAGCCTGCCTCAGGCCTCTCCTCTTCTGGGGCCAAGGGACAACCAGCTCTCAGCCCGGGAGCCTCTCTTTGAGGGGGAA<br />GGTGGTGGTTCCCTGGTGCATCACCATCAGGAGATGATGGTACCATCAGCAGGCATTGTCAACACACCCTGGAGGCAAATGTCTTGAGTGGTGAGAGTAC<br />AGGTGGGCAGTGATATAACTTAGCTGGCTCCCAGTACTCTTGAGTGGTGAGAGTATTGGAGGGCAGTGATATAACTTAGCTGGCTCCCAGAGGGCAGGGG<br />GCTCTCCAGTCCCACCGTCCACTCCTGCCTCCCTCAATTCCCCAGAGGGATAGACACTTGTGGAGTGAGGATTCTTCCAGGTGGGAGACACCCCCATCAT<br />TCTCTTGGGAGTTGTATCTCTTGCCCATCCCCAACTGTTCTATCCATATGCAGGTGCAGATACAAGTGCAAGGCAGCCCGGCACATTCCTGAGTGTTTGG<br />GGCAGGGCTGAGTGAAACAAAGGCCAGCTTCCCGGGCCAGCCCTCACAGGCCTGTGTGACAGCATCCCCAGAACATTTGAGTGTGCGAAGGCCCTCTGGG<br />AGACACTAAGTCAGGGGGCTTCTGGGGAATGGAAATAGAGATGTTCCTGTGCCCCAGGAGTTGTCTGATTTCTCTAACTGCCAGCTGCTGGAGGGCAGGG<br />ATGTTGTCCTGTTCATCACTGGGTCGTCACTAGGCAGGCCTTCATCATCTAGCTGGGATGTGTAGCTGGTAGAGGTGACGTCATAGTGTGACATTAGGAG<br />TTTGTATGTGACTTGAGCATGATGCTTAATGTCTTTCAGTTTTCTCATCTATAGAATGGGCTTACTAATTTCTACTTCATTTAGTGTTTTTTTTTCTTTT<br />TTTTTTTGGTGGCAGGTTAAATGACTGAAGTAAGCACTGAATAAACAATGTGGTTGTTATTAAA

Expression



Full and truncated open reading frames discovered in ENST00000617199

In silico ORF/peptide predictions
>peptide 1 (85 aa)
MTGPCSGPREGESCKPRKPRYPVCFLQGLDHSFPYRPSSRLESVGACVHVCTCACVWVGLRSGGTWDSTRDSSLQTYGVFGKLII

>peptide 2 (78 aa)
MICRGVCVEHIVQNWCPLQSCPGFSLPQASPLLGPRDNQLSAREPLFEGEGGGSLVHHHQEMMVPSAGIVNTPWRQMS

>peptide 3 (56 aa)
MQRPWGMLKGGRKASGAGAKRWRGSLVGEEPQGPAVSSPRSFLEMQTEAGCGGSRL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT048211 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N2A0|CX062_HUMAN (Evalue: 4.0E-22)