Detailed information on ENST00000617199

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367097 tubby like protein 4 protein coding ENST00000617199 527 315 UTR3 Trans
ENST00000382044 tumor protein p53 binding protein 1 protein coding ENST00000617199 531 315 UTR3 Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding ENST00000617199 604 293 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000617199 553 270 UTR3 Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding ENST00000617199 612 290 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000617199 611 295 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000617199 519 289 UTR3 Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding ENST00000617199 621 322 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000617199 553 270 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000617199 532 271 UTR5 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding ENST00000617199 607 289 UTR3 Trans

Sequence

>TCONS_00202516 (2463 nt)
TTGCCTTCTGCTAGAAGGAAATGTAGGCTACTGGGAAAGGACAGAGCCAGGTCTGTGTGCCTCTCCCTGGAGTCCCTGACACTTGCTGTTTTGGCTTGAA
GCCTTTGGCCATTAAAGTTGCCTGTATCCAGGCATGACTGGCCCCTGCTCAGGGCCAAGAGAGGGTGAGTCTTGCAAACCAAGGAAGCCCAGGTACCCTG
TCTGCTTCCTTCAGGGTCTGGACCACTCCTTTCCCTATAGGCCTTCCAGTCGGCTGGAGAGTGTTGGTGCATGTGTGCATGTGTGCACGTGTGCATGTGT
GTGGGTGGGGCTGAGGTCTGGGGGTACCTGGGATTCCACAAGGGATTCCTCTTTGCAGACATATGGTGTCTTTGGTAAATTAATTATTTAATTCGATGGA
TGTTTATTAAGATATTGATTAAGCCCCTCCTGGGTGCTTGGCTCTAGGGAATGATTCCTTGACCTCATGTAATTTGCATTGTAGCAAGGAAGGCAGACTT
GAGGCGAGGAGCAGATGACAGAGAGCAGTAACAGCTCTGAAGAAAAGCTAGAGGCTGATGAGATGACCATGACTTGGGGTGAGGGGAGAGAGCAAGACAA
GGACTGCTCTGTCGGGAAGGCCTTTGACTGGGGGCCTGAATGATGGAGAGCCAGCCACATGAAAAACTTAAAAACAGCACTGCAAAAAGAGCACTGCAGG
CAAGGAATTGGTAAATGCAAAGGCCCTGGGGCATGTTGAAGGGTGGAAGGAAGGCCAGTGGAGCTGGAGCCAAGAGATGGAGGGGCAGCTTGGTGGGTGA
AGAGCCCCAGGGACCCGCAGTGTCATCACCTAGGAGCTTCTTAGAAATGCAGACTGAGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGG
AGGCCGAGGCGAGCGGATCACCTGAGGTCAGGAGATCAAGACCAGCTTGGCCAACATGGCGAAGCCCCGTCTCTACTAAAAAAATACAAAAATTAGCCAG
GCGTGGTGGCAGGTGCCTGTAATCCCAGCTACTAGGGAGGCTGAGGCAGGATAATTGCCTGAACCCGGTCAGAAGGTGGAGGTTGCAGTGAGCCGAGATC
ATGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTGTGTCTCAAACAAACAAACAAAAAAACAAAAAAAAAGAAATACAGACTGAAAGCCCCAGCCT
AGACTTGCTGAAACATAAGCTTTTTTTTTTTATATCAAGATCCCCAGGTGATCTGTGAGAATTACTCCCCTAGTATCTCATTTTATAGATGGGGAGACTG
AGAGCCAGAGAGAGGAAGGGACTTCCTAGAGTGCTGGAGCTGACAGTCCTGTCCCTGCCCTGGTGCCCCTTCCAACTGCATTTTACCAGAAAGGCTGTCT
GACTTCCTGGGGAGGCTGAGAGTGAGGAGGGTATGAACCACTAGAAGCAGATGATCTGTAGAGGGGTCTGCGTTGAGCACATTGTGCAGAATTGGTGTCC
TCTGCAAAGCTGCCCAGGTTTTAGCCTGCCTCAGGCCTCTCCTCTTCTGGGGCCAAGGGACAACCAGCTCTCAGCCCGGGAGCCTCTCTTTGAGGGGGAA
GGTGGTGGTTCCCTGGTGCATCACCATCAGGAGATGATGGTACCATCAGCAGGCATTGTCAACACACCCTGGAGGCAAATGTCTTGAGTGGTGAGAGTAC
AGGTGGGCAGTGATATAACTTAGCTGGCTCCCAGTACTCTTGAGTGGTGAGAGTATTGGAGGGCAGTGATATAACTTAGCTGGCTCCCAGAGGGCAGGGG
GCTCTCCAGTCCCACCGTCCACTCCTGCCTCCCTCAATTCCCCAGAGGGATAGACACTTGTGGAGTGAGGATTCTTCCAGGTGGGAGACACCCCCATCAT
TCTCTTGGGAGTTGTATCTCTTGCCCATCCCCAACTGTTCTATCCATATGCAGGTGCAGATACAAGTGCAAGGCAGCCCGGCACATTCCTGAGTGTTTGG
GGCAGGGCTGAGTGAAACAAAGGCCAGCTTCCCGGGCCAGCCCTCACAGGCCTGTGTGACAGCATCCCCAGAACATTTGAGTGTGCGAAGGCCCTCTGGG
AGACACTAAGTCAGGGGGCTTCTGGGGAATGGAAATAGAGATGTTCCTGTGCCCCAGGAGTTGTCTGATTTCTCTAACTGCCAGCTGCTGGAGGGCAGGG
ATGTTGTCCTGTTCATCACTGGGTCGTCACTAGGCAGGCCTTCATCATCTAGCTGGGATGTGTAGCTGGTAGAGGTGACGTCATAGTGTGACATTAGGAG
TTTGTATGTGACTTGAGCATGATGCTTAATGTCTTTCAGTTTTCTCATCTATAGAATGGGCTTACTAATTTCTACTTCATTTAGTGTTTTTTTTTCTTTT
TTTTTTTGGTGGCAGGTTAAATGACTGAAGTAAGCACTGAATAAACAATGTGGTTGTTATTAAA

Expression



Full and truncated open reading frames discovered in TCONS_00202516

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.