Detailed information on ENST00000617518

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000368324 synaptotagmin XI protein coding ENST00000617518 509 289 UTR3 Trans
TCONS_00057601 transcribed_unprocessed_pseudogene novel protein coding ENST00000617518 513 294 UTR3 Trans

Sequence

>ENST00000617518 (774 nt)
ACAGGGACCCCTTGGGAGTCATCTACATAAGCTTTCTAAAACCTAACTTTTAAACAGCAGCAACAGTCAAACACAGTGGATGTGGCGGGACCATTCTCTT<br />ATGATAAGGTTTTGTACTTCTAAAATAGGTTTCCTACTCAAAGTTCGGACCATAATTAATCAGTCCTGGTTGGAGACTTATACCAAAACTGCAATATATG<br />TGTGTTTTAAGCATGATTTAAACATAACTTTTCTTTTCTTTTTTTAGAGACAGAGTCTCGCTCTGTTTCCCAGGCTGGAGCGCAGTGGCATGATCACAGC<br />TCACGGCAGCCTTGACCTCCTGGGCTCAAGCAATCTTCCCACCTTAGCCTTCTGAGTAGCTGGGACCACAGGCACATGCCACCAAGCCTGGCTAATTTTT<br />TTATTTTTTTGTAGATGAAGGGTCTTGCTATGTTGACCAGGCTGGTCTTGAACTCCTGGGCTCAAGCGATCCTCCCACTTCAGCCTCCCAAAGTGCTGGG<br />ACTACAGACGTGAGCCACTGCACCCGGCCTAAACATAGTTTTCCAAGCACACTATGGTCATTATCTTTAATTTATGGGAGAATTAAAGAGTTGAAATGAC<br />TCTTCACTCTTTTGAAGTGGTAGCAACTAAAAAACATAGTAGTTTTTTAGTTTTGGCAGTAGTTATGGCAGAGAGATTGGAACCACTGGATGCTGGACTT<br />CCAGGGCATGATGGCTCACTCGATAGAGACAGAGCACTACGGAAGGGAGCCCCATTCCCAAGCATGGTGTCCAA

Expression



Full and truncated open reading frames discovered in ENST00000617518

In silico ORF/peptide predictions
>peptide 1 (59 aa)
MTLHSFEVVATKKHSSFLVLAVVMAERLEPLDAGLPGHDGSLDRDRALRKGAPFPSMVS

>peptide 2 (55 aa)
MWRDHSLMIRFCTSKIGFLLKVRTIINQSWLETYTKTAIYVCFKHDLNITFLFFF


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT016678 (Evalue: 2.0E-38)

Best hit to Swiss-Prot:
sp|Q6UX73|CP089_HUMAN (Evalue: 4.0E-16)