Detailed information on ENST00000617922

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00008758 flavin containing monooxygenase 4 novel protein coding ENST00000617922 519 301 UTR3 Trans
TCONS_00017068 calponin 3, acidic novel protein coding ENST00000617922 548 295 UTR3 Trans
TCONS_00039117 nicotinamide N-methyltransferase novel protein coding ENST00000617922 503 298 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfami... novel protein coding ENST00000617922 571 304 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarit... novel protein coding ENST00000617922 541 316 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarit... novel protein coding ENST00000617922 541 316 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000617922 516 287 UTR3 Trans
TCONS_00211163 opioid growth factor receptor-like 1 novel protein coding ENST00000617922 568 302 UTR3 Trans

Sequence

>ENST00000617922 (4420 nt)
ATCCAGTGTATATATGTACCGCATTTCTTTATCCATCTGTTGGTGGATCCTTAGGTTCATTCCTTATCTTGGCTGTTGTGACTAGCAGTAAACGCAGGAG<br />TGCAGGTATCTCTTCGGCAGACTGATTTCATTTCCTTTGGATATATATACAGTAGTGGGATTGCTGGATCATATGGTAGTTCTATTCGTAGTTTTTTTTT<br />AGGAACCTCTATGCTGTTTTCCATAATGACTATACTAATTTACATTCCCAATAACAGTGCAGTGTATAAGAGTTCCCTTTTCTCCACATCCTTGCCAACA<br />TGTTTTTTTCTTTTTGATAATAGCCATTCTTACTGTGGTGAGATGATACCTCATTGTGGTCTTGACTTGCATGTCCCTAATAATTAGTGATGTTGAACAT<br />TTTTTCATGTACTTGTTGGCCATTTATATGTCTTCTTTTGAGAAGTGTCTGTTTGGCTCATTTGCCCATTTTTTTTTTTTTTCTTTTTGAGACAGAGTCT<br />TGCTCTTGTCGCCCGGGCTGGAGTACAGTGGCGCAGTCTCTGCTTACTGCAACCTCCGCTTCCAGGGTTCAGGTGATTCTCCTGCCTCAGCCTCCAAAGT<br />AGCTGGGATTACAGGTGCCTGCTGGCTGATTTTTGTATTTTTAGTAGAGACAAGGTTTCACCATGTTGGCCAGGCTGGTCTTGAGCTCTTGACCTCAGGT<br />GATCCACCTGCCTCGGCCTCCCAAAGGGCTGGGATTACAGGGGTGAGCCACCATGCCCGGCCCATTTGTCCACTTAATTTTTTTTTTTTTTTTTTTTTGG<br />CTGTTGAGCTCCTTGTGTATTCTAGATATTAATCCTTTGTCAAGTGAATATTTTGCAAATATTTTCTCCCATCCTGTGGGTTGTCTCTTCATTCTATTGT<br />TTCCTTTGTTGTACAGAAGCTTTTTTGTGTAATAGAATTCCATTTGCCTATTTTTGCTTTTCTTGCCTGTGTTTTTGAGATTTTATTCATAAAATCTTTG<br />CCTAGACCAATGTCCTGAAGCATTTCCCCTGTGTTTTCTTGTAGTAGTTTCAGGTCTTACATTTAGGTCTTTAATCCATTTTGATATTTATATATGGTGA<br />CAGATAAGGATCTAGTTTCATTCTTCTGCATATGGTTATTCTTACAGTTATCCTATTTTTCCAGTACCATTTATTGAAGAGTGCTTTTTTCCCCAGTATA<br />TGCTCTTGGTGCCTTTGTGAAAAGTCAGTTGGCTGTAAATGTGTGAATTTATATCTGGGTTCTCTATTCTGTTCCATTGATCTATGTGTCTATTTTTATG<br />CTAGTACCATGCTGTTTAGATATTATAGCTTTGTAGTATATTTCGAGGCCAAGTAGTGGTGATGCCTCCAGCTTTGTTCTGTTTGCTCAGGATTGCTTTG<br />GCTATTGGGGGTCTTTTGTGGTTCCATATTAATTTTAGAATTTTTTTTTGACATTTCTGTGAACAGGATCATTGGTATTTTGATAGGGATTGCATTGACT<br />CTAGATTACTTTGGGTAGTATGGTCATTTTAATATTTATTTTTCTTATTGGTGGATATTTACATTAATTTTGCCTTTGTTGCTGCTATAGGCAGTGTTAA<br />AGTGGTATTTAATAAATAATTTTTATCAGAAATTTCTAATAGCCACATCTGTTGTACACTTTTCATTTGTCTTTTTTATTTTTTTGCAACAAAGTCTTGC<br />TCTGTCACCCAGGCTGGAGTGCAGTGGTGCTCACTATAGCCTTGACTTCCTGGGCTCAGGCAGTCCTCCTACCTCAGCCTCCCAAGTAGTTGGGACTGCA<br />GGCGTGTGCCACCATGCCTGGCTTATTTATTTTTAATTTTAATTTTTGTGGAGATGAAGTCTCACTGTATTGCCTGGGCTGGTCTTGAATTCCTGGGCTC<br />AAGTGATCCTTCCACCTTGGCCTCCCAAAGCGTTGGGATTACAGACGTGAGCTACCCATGCTCAGCCTGTCATCTTTCTTGATTCCCATGAATATCTGCT<br />GTGTTTGGCTTTTTCTTTCTTGATATTCTTTGGAGGCTGGGAAGATACCGCTCTGTGGTATTCTCTCCTCCCTTTCTCCCTTCGAAGTCCTAACCAGGCC<br />TGACCCTGTTACAGCTTCTGAGGTCAGATGAGATAGGGTGCATTCAGGGTGGCTTAGCTGTAGACTCTCGTTTTCTTTTTTTTCCTTTTTTCGAGACAGG<br />GTCTTGCTCTTTTGCCCAGGATGGAGTGCAGTGGTGTGATCACAGCTCATTGCACCCTTGGCCTCCTGGGCCCAAGTGATCCTCCCACCTTAGCCTCCTG<br />AGTAACGGAGACAAACTTTATCTATTTTTCGTAGAGACAGGGTCTCACTGTATTGTCTAGGCTGGTCTTGGACTCCTGGGCTTAAGCAGTCCTCCTGCCT<br />CAACCTCCCAAATTGCTGGGATTACAGGCAGGAGCCACTGTGCCCAGCTTCTCCTTCCTTTTGCTAGATCTCTCTCTTGAAATGTGGTCCTTGACTTTTA<br />TTCCTAGGTAGGTGATCTCTCTTTCACTTTAAACTTTTTTTTTTCTTGCTGACATCCAACTGTTTAGCTCCAGCCTCTTTTTGAGCACCTTAGACACAAA<br />TGTATTTTGGGGTCAGGTACAACCCAGAAAATTCACCTCTCCTTCAGTCCCTCCTGCTGTGTTCCTTACACATATAGCATAGCCGTAAAGTTAGACCCGG<br />ATTCCAAATCTGCCTCTGCTACTTACTAGCTGTGGACCCCAATGGACAAGTTTATTACAAGAAAATTTAATCCTTTCATCTGTAAGTGGAATTAACAGTC<br />TCCATGTCATGGGGGCTTCGTAAAGGTTCATTGAGCCACTATGTATCTCACTGTGTACCTGGCACAGTGCTCGGCACTTAGTCACTGGCAGCTGTTGTAA<br />CTGCCACCTACATGACTAGAACCTTTCCGTAGCATATTGTCAAATCTACATTTTAAGTCTCTACAATCTGGTCCTGCCTTTATGTCCTCAGAACCCTTTC<br />CTGTGACTTCATGCTCTGTTGATACTGTCACCCAGGCTGGAGTGCAGTGGCACAATCACAGCTCACTGCAGCCTTGACACACTGGGCTTAAGGGATCCTC<br />CTGCCTCAGCCTCCCAAGTAGCTGAGACCACATGTGTGTACCACCATGCCTGGATGATTTTTTTTATTTTCTGTAGAGACATAGTCTTGCTAGGTTGCCC<br />AGGCTGGTCTCAAACTCCTGGGCTCAAGTGATCCTCCCACCTTGGCCTCCGAATGTTAGGATTACAGGCGTGAGCCAGCACAGCTGGCCTTCTGTTGACT<br />CTGTAAGTTCTTTGGTGGTTTTGCCCCTAGTTTTATCCCATCTGGTATCTGGTTTACAGCAGCTATTTCAAACACCTCAGTTAATTGTGGTGAGAATTTT<br />GTAAGATTCGGCAGGGTAGGGAGGATGGGGACAGGTTCTTGGGGTGCATGAATGAGTCCTGCTTTCTCAGCCTGCTGGCGGTTTTCCTTAATCTCTCTCT<br />TGCTTTGATCTCTCACTTCTTCCACATTCCTGGGCACCCACCCACATCCCTTACCCCAGACACTTGCTTCCTACCTAGATGCTACCTTGGTAGGGAGGTG<br />CAGCCTTGTCGCTGAAATGGAGGTAATGTGGGCCTGGGATTTGTGTCTTTTTCAGAACAGTGCAACCCTGAAACTCGTCCTGTTGAGAAAAAAATAAGAT<br />CAGCTCTTCCTACCAAAACCGTAAAGCCTGTGGAAAACAAAGATGATGATGACTCTATAGCTGATTTTCTCAATAGTGATGAGGAAGAAGACAGAGTTTC<br />TTTGCAGAATTTAAAGAATTTAGGGGAATCTGCAACATTAAGAAGCTTATTGCTCAATCCACACCTCAGGCAGTTGATGGTCAACCTCGATCAGGGAGAA<br />GACAAAGCAAAGCTCATGAGAGCTTACATGCAAGAGCCTTTGTTTGTGGAGTTTGCAGACTGCTGTTTAGGAATTGTGGAGCCATCCCAGAATGAGGAGT<br />CTTAAGATGGATTATTGTGCTGCTTGCTCAAGCGTGTGCTTGACTCCTGGAACCTGCCTGCTCCCTCTCCCAGACCAGCTAGTTTGGGGCTGGGGAGCTC<br />AGGCAAAAGAGGTTTCCAGGATGCAGATTAGGTCATGCAGGCCTTTACCGGCATTGATGTGGCTCATGTTTCAGGCAGACTTGGGGTCCTTAAGGTGGCA<br />AGTCCTTTATGGAGAGAAAACTTGACATTCAGATGATTGTTTTTAAATGTTTTACTTTTGGTACAGTTGATAGACATCATAAACGATATCAAGCTTACAC<br />TTCATATGGAGTTAAACTTGGTCAGTGTTAATAAAATCAAAACGTGATTCTACTGTACATTGCATTATTCATAATTTAATTGTTTGAAATTACATTAAAT<br />AAATCAACTAATTAAATACT

Expression



Full and truncated open reading frames discovered in ENST00000617922

In silico ORF/peptide predictions
>peptide 1 (77 aa)
MRSLKMDYCAACSSVCLTPGTCLLPLPDQLVWGWGAQAKEVSRMQIRSCRPLPALMWLMFQADLGSLRWQVLYGEKT

>peptide 2 (74 aa)
MVILTVILFFQYHLLKSAFFPSICSWCLCEKSVGCKCVNLYLGSLFCSIDLCVYFYASTMLFRYYSFVVYFEAK

>peptide 3 (70 aa)
MLNIFSCTCWPFICLLLRSVCLAHLPIFFFFLFETESCSCRPGWSTVAQSLLTATSASRVQVILLPQPPK

>peptide 4 (59 aa)
MPGPFVHLIFFFFFFWLLSSLCILDINPLSSEYFANIFSHPVGCLFILLFPLLYRSFFV

>peptide 5 (58 aa)
MLFSIMTILIYIPNNSAVYKSSLFSTSLPTCFFLFDNSHSYCGEMIPHCGLDLHVPNN

>peptide 6 (55 aa)
MNESCFLSLLAVFLNLSLALISHFFHIPGHPPTSLTPDTCFLPRCYLGREVQPCR


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT025115 (Evalue: 7.0E-61)

Best hit to Swiss-Prot:
sp|Q6UIM2|ZNHI3_PANTR (Evalue: 3.0E-69)