Detailed information on ENST00000618078

lncRNA-RNA interactions

Number of interactions: 14

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000332592 DCN1, defective in cullin neddylation 1, domain containing 2 protein coding ENST00000618078 620 292 UTR3 Trans
ENST00000375403 DCN1, defective in cullin neddylation 1, domain containing 2 nonsense mediated decay ENST00000618078 620 292 UTR3 Trans
ENST00000513269 NEDD4 binding protein 2 protein coding ENST00000618078 503 290 UTR3 Trans
ENST00000560870 sense_intronic sense intronic ENST00000618078 509 269 noncoding Trans
TCONS_00008758 flavin containing monooxygenase 4 novel protein coding ENST00000618078 616 285 UTR5 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000618078 610 282 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000618078 610 282 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000618078 610 282 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000618078 610 282 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000618078 505 287 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000618078 621 286 UTR5 Trans
TCONS_00243136 glioblastoma down-regulated RNA novel protein coding ENST00000618078 503 299 UTR3 Trans
TCONS_00247616 unprocessed_pseudogene novel protein coding ENST00000618078 503 299 UTR3 Trans
TCONS_00247617 unprocessed_pseudogene novel protein coding ENST00000618078 503 299 UTR3 Trans

Sequence

>TCONS_00247617 (2626 nt)
GGGAAGGATCCGTTTTGGCGGGCGGTTGGCGTTGCGCAGAAGGCGGCGGCGGTGGTGGCTTGTGGTGCGGCCTCACCATACAGGAACAGGGCAGACGTTA
GCGTGAGTGATCACTCTCAATCCCGGAGAATGATTTTAACTGATCATTGTACTAATAGGAAGGAGTCCAGGTCATCCTGAGAAGAGTTCGCTTGTCCAGA
GTCCAAGATGCAGATTTGTTGGATTTCTGTAAGCCACTCGAAGCCACATATTCATTTCTGATGACAGCTTTACACTTGTGCTGGAAGAACACCCACTGTG
ACAACTGCTGCCTATGTTTAGTCTGTCCAGGAGCTCTACCAACTAGCATGTTTGCAGAAAAACCTACACTGTTCTTGTTAGCAGCTATGTAAATATTAGA
TCTTTCTGAGTTTCTCTTCTCAGATCTGCCAATTTCTTTGGGGCAAATTGTATCCTGCAGTAGCCTCAATTTACCCTTTGAAATGAGGGATTAAAGGTTT
TAGACATTCTTTGGGTTATCTGAAACACAATTCTTTTTGGATCAGTAATGTTTTATATATGTCCACTTTATGATGTTTAAAATTTTATTCCCCCTATGTA
TTAGTTTCCTGTGGCTGCTATAACAAATTACCACAGACTTGGTGGTTTAAAACAAGAGGAATTTATTCTTCTCAAAATTTTGGAGCCCAGAAGTCTGCAA
TCAAGATATTGAGGCCCCTCTGGAGGCTCTAGGAGAGAGACTGTTCTTTGCCTCTTTTAGCTTCTGATTATGGTCAGCATTCCTTGGCATATCTCTCTGT
TCTGTTTTCACATTGTCTTCTCTTTTGAGTACTTGCATCAGAACTCTCCCTCTACCTGTGTATTATAAGGATACATATGATTGCAATTAAGAAACCACTT
GGATGAACCAGGATAAATTTCTCCAATCCTATCTTTTAATTCAACCTGAGAGAGCAGATTTAAAATATATTTTATTCCTAAAGTGGCAGGTCCCTGAAAA
AAAAATGTAGATTCATGTTTATTTTGAGACAGAGTCTCGCTTTGTCACCCAGTCTGGAGTGCATTGGTGTGATTTTGGCTCACTGCAACCTCCGCCTCCC
AGGTTCAAGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTGCCACCGTGCCCGGCTAATTTATGTATTTTTGATAGAGACAGGA
TTTCACCAGTTTGCCAGGCTGGTCTAGAACCCTTGACATCAGGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATAAGTCACCGCGC
CCGGCCGGATTCATCTTTTAATCACATCTTTTGCTATATAAAATAACATTTACAGGTTCAAGGGATTAAGATAAGAATCTCTTTGGGGGAGGGCCATCAT
TCAGACCACTACACATTGGTTCCCTAACCTCTACCCAAATAGATTTGAGCTAATTCAGAAAAGAAAATGTTATTTTTAAAGAAACAGAGGCAAGTGAAAA
AAGGCTCAGAAACCTGGGTTCTTGTCCTGCCTCTGCCATTATCTAATGGTGTAACCATGGGTGAGCCATTTGCCCTCTTTAGTCCTTAGTTTCTTTATCT
TATAGGGAAGGAGTTGGATAAGTGATCGTTAACAAGCCTTCTAGACCTAAGACTTTATGAAGTGATTCCTAAGTCATCTTGGAGTTTGTTTTTTAAGTCA
ATAATTTAAAATGTGAATCAAAACATTACAAATTACAACATTTTGGGTGAGGGTAGTCCTGTTCTTGCCTAGGACTTGAAGGATGGAAGACTGAGCTGTT
GGCTGACTGTCAACTCCTTGGGGTATTAACACAGGATAACTAACCTGTATTTGTTAGCTGTGTGCTTAAACCTTTCTGAAGAAAAGATTTTCTACAAGGG
ATGTAATAGACTAGCTGGAACATTTTCACTACATTTTTAGTGAGACTATAGACTGTGTAGCCTGAATTTTCTTTCCAGTAGTAGTAGTTCATCAAAATTA
AACACTGACAGATTTTTTTCTACCTGAAACTAGGTCATAGAGTAAAAATTTTCACTTGCAGTCTTACTCTTCAGACTCACTGAATGCCTGTTCCATCCTG
TTTCATTGCTAGGAAGGACACTAGATAAAGCCATGAGCTTGAGATGGTGTACTTGAAAGGACCGTTTCAAGATCAGGTTTTATAACACACTCATTATTTA
TTTCTTCTGTGGAGAGGAGAAACCAAATTGGATTCAAGTATTTTTCTGATAGTAATCTATGTTTCTTAGAATAAAGCAAGTTCATATCTGAGCCAGAGGG
CATAATTATGTCAGAATAAAATATAATTATGTCGGAATAAAATGCCCTGTACTAAAGAGGTCAACTAACAGGCTGGGAAATCTTAAGTTTTGTTTTTAAG
ACAAATCCTTGAACTCTCTGTGCCTCGTTTCTCATCCCTAAATCTGTGCAACTCACCTCACAGGGAGTTGTGGAGGGTAATATACTGCTAATTTGTTCAG
TGTTTCACAACAATAAATTATGCCTAAGATCTGATAAAACATAGCAAACCTCATTTATGTAAGTAGAGACAAGCATGGATAAGACTTACAGATAATAAAG
AAAATTCATTAAAATTTTTTTAACTTC

Expression



Full and truncated open reading frames discovered in TCONS_00247617

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.