Detailed information on ENST00000618835

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000424496 sense_intronic sense intronic ENST00000618835 580 258 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate red... processed transcript ENST00000618835 557 254 noncoding Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000618835 521 268 noncoding Trans
TCONS_00076763 protein phosphatase 1, regulatory subuni... novel protein coding ENST00000618835 608 265 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000618835 541 264 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000618835 623 264 UTR3 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding ENST00000618835 614 266 UTR5 Trans
TCONS_00251977 G protein-coupled receptor 82 novel protein coding ENST00000618835 507 263 UTR3 Trans

Sequence

>ENST00000618835 (2261 nt)
CATGTCCTCCTATGGGCAGAAAAGAGTCCTATTTTAATACCTAAACCAAAGCTGTATTGTCATAAGCCACTTCTTGATGAAATTGTGACACACACCTTAA<br />TATCACTTTCATAAATAGGAAATGGGAGGCTTTTCTCCTCATTTTATTATAAAGATGTCTGTGGGAAATTCTCTTAATTCATCCTCTTTAAAATTTTACC<br />TTTTAGCTAAAATGTCTCTGTTGAAATTCAAATTTCTAACTTAGTGAAATCGAAATCATTCATAGACTGTAGTATTGCAGGGCTCGAACTGTGCAGTGTT<br />CTGAGGTAGTTAAGAGCTTTGCTGGATTCAGGCCCTGGGTTTGCCCAGGCCTGTATGACCTTGAGCAAGTTATTCTGAGCTTCACTTTCTTCCTCTATGA<br />TGGAGAAAATAATGATAGCACTTACCTCTATAGAGTTATGAAAATTTAGTAAGATAATCCATGTATGCATTTAGCACTGTTGAGATCTTGGCTTACTGCA<br />AGCTCCGCCTCCTGGGTTCACACCGTTCTCCTGCCTCAGCCTCCCGAGTAGTTGGGACTACAGGCACTGGCCACCACTCCCTGCTAATTTTTTGTTTTCG<br />TATTTTTAGAAGAGACGGGTTTCACCGTGTTAGCCAGGATGGCCTCGATCTGACCTCGTGATCCTCCCGCCTCGGCCTTCCAAAGAGCTGGGATTACAGG<br />CATGAGCCACCATGCCCAGCCTATTACTCTTAAGCCTAGTTATTTAAATCAAACATTTAGTGAGCTCTTACATGATGTTATAGGAGACTCTGAAGATTCT<br />CAACTGTTGATTCCTGTTCATAAGGCAGTTATAGTCTTGTTGAGAACTAAGTTTTATGCAGATAAATAAACTAGAAAGTGTATGGTGAATTGCCGAAAGA<br />GAGAACAAAAGTACTGTCAGTGCGCAGTAACTGGGAAGAAAACAGTAGTCCAAAGTAGAGGGGCCAAACTTTGAGGAGGAGGCTTTGGAGTCTGGAAGTG<br />AGGAAAGAGTGGGAAGGGCATTTTATGCTCTGACAGCTACAAGAGCAGAGTCAGAGATATTTGTAACTCCCAGTTAGGAGATTTGAATAACAGAAGTACT<br />CTTGAGTATATGGTGACAAACCTTTATTTTTTATTTACTATTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTTGCCCTGGCTGGAGTGCAGTGGCAT<br />GATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTTCTGCCCCAGCCTCCCAAGTAGCTGGGACTGCAGGTGCCCACCCCCATGCCCAG<br />CTAATTTTTGTGTTTTTAGTAGAGATGGAGTTTCACCATACTGGCCAGGCTGGTCTCGAACTCCAGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAAGT<br />GCTGCGTGAGCCACCGCACCCAGCCGACAAACCTTTATTACCAGGTGATATCAAATATTATTAGAGCTGACTGTGGTAGTGACAGTTTTTCATATAAATG<br />AAATTGCATCCTCCCAAAGGAATCCTGAGTATGTATGCACTTTAAAAGAACCCAGAATCATCTAAATATTGTCACATGGCTCTTGCAAGTGATGATAATA<br />GTGATGCTTATAATAATGAGGATTAGCTGCACTCATCAGCCTGTAGAAAGTAAAAAGTTTCCTTTTCGAAATTTCCTTTCTTGTTAAAGAATAAATCATA<br />AGTGTTAGAAATAATAGTTTCTTTTAAAGACTAACTTCCTTCAAGCCTCCTCTGCTCTGTGCTAATGACTCTTCATTAAGCCCTATCCTATGTAGCTGTT<br />AGATATAAGGGAATAAGTATATTCTATGTCCTTGTACTTTAACCAAGATATTTGTGCTGGACATGCTCACAGGCACGTTCCAGCTTGCAGCCTATGCCCC<br />TTCCTTATTTGGAAATATTATTACTTTTCTAAGTCTTTTTGCAAGCAACTTCTTCTTTTCCTTTGTTCTCTATTGCCTTTCCCTATATAGGAAAGTTTTA<br />AGTTATTAGCCAGTCGGGTTTAATTTAAATTGTGAGGTCCAGCTCCAGCCAATGGAGACAGGACACAAGCTGCATAAGGGATAAAAACTGCTTCCCTCCT<br />TTGTTCGGGTGTGCTGTCACCATTGTTTCATCTGTGAGGAGCACCCTTTCTGCAGAAAGTAAAATTGCCTTGCTGAAAAAACTTTTTGTCTAAATGCTGG<br />TTTTTCCTTGCAGTACCTAGGAGCAAGCATTCTGTTTCTAAATAAACATTTTACTTGTAAC

Expression



Full and truncated open reading frames discovered in ENST00000618835

In silico ORF/peptide predictions
>peptide 1 (66 aa)
MYAFSTVEILAYCKLRLLGSHRSPASASRVVGTTGTGHHSLLIFCFRIFRRDGFHRVSQDGLDLTS

>peptide 2 (58 aa)
MISAHCNLRLPGSSNSSAPASQVAGTAGAHPHAQLIFVFLVEMEFHHTGQAGLELQTS

>peptide 3 (55 aa)
MSHHAQPITLKPSYLNQTFSELLHDVIGDSEDSQLLIPVHKAVIVLLRTKFYADK

>peptide 4 (54 aa)
MSLYFNQDICAGHAHRHVPACSLCPFLIWKYYYFSKSFCKQLLLFLCSLLPFPI

>peptide 5 (50 aa)
MHFKRTQNHLNIVTWLLQVMIIVMLIIMRISCTHQPVESKKFPFRNFLSC


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT013093 (Evalue: 3.0E-157)

Best hit to Swiss-Prot:
sp|Q96MD7|CI085_HUMAN (Evalue: 6.0E-21)