Detailed information on ENST00000619092

lncRNA-RNA interactions

Number of interactions: 110

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000619092 616 300 UTR3 Trans
ENST00000324537 SH3-domain GRB2-like 3 protein coding ENST00000619092 578 309 UTR5 Trans
ENST00000338758 parvin, beta protein coding ENST00000619092 638 298 UTR3 Trans
ENST00000394622 STEAP family member 2, metalloreductase protein coding ENST00000619092 619 304 UTR3 Trans
ENST00000399120 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000619092 569 300 UTR5 Trans
ENST00000423516 transketolase protein coding ENST00000619092 640 301 CDS Trans
ENST00000427746 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000619092 569 300 UTR5 Trans
ENST00000450928 antisense antisense ENST00000619092 540 301 noncoding Trans
ENST00000472528 transketolase nonsense mediated decay ENST00000619092 640 301 UTR3 Trans
ENST00000475187 THO complex 5 retained intron ENST00000619092 582 293 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000619092 610 300 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000619092 632 298 CDS_UTR Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000619092 552 288 CDS_UTR Trans
ENST00000569455 cadherin 13 processed transcript ENST00000619092 597 307 noncoding Trans
ENST00000589403 zinc finger protein 532 processed transcript ENST00000619092 623 293 noncoding Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000619092 520 296 UTR3 Trans
ENST00000606818 antisense antisense ENST00000619092 500 271 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000619092 663 301 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000619092 675 290 UTR5 Trans
TCONS_00006081 processed_pseudogene novel protein coding ENST00000619092 614 309 UTR5 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000619092 601 285 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000619092 636 302 UTR5 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000619092 649 288 UTR3 Trans
TCONS_00038233 protease, serine, 23 novel protein coding ENST00000619092 622 289 UTR3 Trans
TCONS_00050195 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000619092 605 311 UTR5 Trans
TCONS_00061864 transmembrane protein 116 novel protein coding ENST00000619092 627 286 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000619092 606 300 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000619092 606 300 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000619092 606 300 UTR5 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000619092 673 286 UTR5 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000619092 658 298 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000619092 673 286 UTR3 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000619092 658 298 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000619092 648 288 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000619092 601 282 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000619092 609 292 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000619092 609 292 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 626 304 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 637 289 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 651 298 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 623 302 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 651 298 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 626 304 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 623 302 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 637 289 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 651 298 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 623 302 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 641 298 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 623 302 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 626 304 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 651 298 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 637 289 UTR3 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 651 298 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 626 304 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 623 302 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 637 289 UTR3 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 626 304 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 637 289 UTR3 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 651 298 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 623 302 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 626 304 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 637 289 UTR3 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 651 298 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000619092 623 302 UTR5 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000619092 605 295 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000619092 644 307 UTR5 Trans
TCONS_00132233 zinc finger protein 43 novel protein coding ENST00000619092 618 263 UTR5 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000619092 543 317 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000619092 667 290 UTR5 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000619092 625 285 UTR3 Trans
TCONS_00152107 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000619092 641 303 UTR5 Trans
TCONS_00152126 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000619092 641 303 UTR5 Trans
TCONS_00152127 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000619092 641 303 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000619092 616 300 UTR3 Trans
TCONS_00163348 runt-related transcription factor 1 novel protein coding ENST00000619092 641 302 UTR3 Trans
TCONS_00163350 runt-related transcription factor 1 novel protein coding ENST00000619092 641 302 UTR3 Trans
TCONS_00163352 runt-related transcription factor 1 novel protein coding ENST00000619092 641 302 UTR3 Trans
TCONS_00168418 dual specificity phosphatase 18 novel protein coding ENST00000619092 629 285 UTR5 Trans
TCONS_00175515 transient receptor potential cation channel, subfamily C, member 1 novel protein coding ENST00000619092 644 309 UTR5 Trans
TCONS_00180672 transketolase novel protein coding ENST00000619092 640 301 UTR5 Trans
TCONS_00180673 transketolase novel protein coding ENST00000619092 640 301 UTR5 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding ENST00000619092 628 298 UTR3 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding ENST00000619092 628 298 UTR3 Trans
TCONS_00187460 spermatogenesis associated 18 novel protein coding ENST00000619092 666 306 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000619092 602 296 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000619092 604 306 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000619092 632 298 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000619092 632 298 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000619092 622 275 UTR5 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000619092 614 306 UTR5 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000619092 646 273 UTR5 Trans
TCONS_00199451 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 novel protein coding ENST00000619092 682 290 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000619092 605 310 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000619092 592 292 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000619092 595 308 UTR3 Trans
TCONS_00226448 collagen, type XXVIII, alpha 1 novel protein coding ENST00000619092 533 288 UTR5 Trans
TCONS_00226450 collagen, type XXVIII, alpha 1 novel protein coding ENST00000619092 533 288 UTR5 Trans
TCONS_00226462 lincRNA novel noncoding ENST00000619092 533 288 noncoding Trans
TCONS_00226463 lincRNA novel noncoding ENST00000619092 533 288 noncoding Trans
TCONS_00226468 lincRNA novel noncoding ENST00000619092 533 288 noncoding Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000619092 663 292 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000619092 626 310 UTR5 Trans
TCONS_00237103 cathepsin B novel protein coding ENST00000619092 701 301 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000619092 700 292 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000619092 660 302 UTR3 Trans
TCONS_00240045 zinc finger protein 706 novel protein coding ENST00000619092 640 307 UTR3 Trans
TCONS_00240046 zinc finger protein 706 novel protein coding ENST00000619092 640 307 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000619092 677 292 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000619092 677 292 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000619092 685 292 UTR5 Trans

Sequence

>TCONS_00252827 (3361 nt)
CATTCTGGTGTTCTTCTTTCCCTTCTGATGTTCCCATCTATCTTCTGTAATCATTTCCTCTCTGTGTAGAGAACTTTCTTTGGTCATTCTTTCATGGTTA
ATCTGCTGGCCACAAATTCTCTAAGTTTTTCTTCGTCTGGGAATGGCCTTTGTCCCCGCGTCACTCCGAGGGCATCTCACGGGATGTGGATTTCCAGGTG
GTGGCTCTCCTCATCCAGTGCCTGGGAAGCGCGTGTCCCTGCCCCCGGCTTCTGTGTTCCAGCTATGAAACCTGCTGCTGTTTAGACTTGTGCTTCTCTC
GAAGGAATGAGGGGTTTCTCTCTGGCAGCTTTCAAGGTTTTTTTCTCTGTCTTTAGTTTTCAGAAATTGTATTACCATACATCCTGGAGCAGATTTCTCT
GGGTTTGTTCTATTTGGATTCAGTTGGCTTCTCGCATCTGTGGGTTTATGTCTCTTGGCTAACAGGAAGTTTTCAGCCATCATTTCCTCACATCCTTTTT
CAGTCCACTTGTTCTCTCCTGCGATTGCGGAAACTTAGAAATCTGCTCTTTGGTTAGGGTCCTGCGGGTCTCTGAGGCCTTGACCGTCCTCGGTCCGTTT
CTGTGTGTTCAGGCAGATGAATTCTGTCTGTCCTCGGGGTCACCGGTTCTGCCCTCTCTCGTCTCCACTCTGCCACTTAGCCCATCCCCAGAGATTTTTA
TTATGACTGTATTTTTTTAGTTGTATAATTTCCACTTACTTCTTTTATGTAGCCTTTATTTCTTGGCTGAGATTTTCTATTTTTTATTTGTTTACAGAGA
GTGTTTGTGGCCTTTTGAAGCGTTTTAGTCATGGCTGCTTTAACACCCTCATCAGATAACTCCAGTATCCGTTCGTCTCGATGTGAAGTCTGGCGCTTGT
CTTTTCTCCTTCAAGTTGTGATTTTCCCGATTCTTAATATGATGAGCGACTTTTCGTTGTATCCTGGGTGGTTCGTGTGTTTATTAGGAGGCTTTAAACC
AGTGACTCCCCTGGGGAGGGTGGTGTGAGGCCTGGCCAGGGGGTTCTGCTTCCTGCCAGGCCTCCAGCCCCACCCCGGCCCAAACAGCTGGCAAGCGCTT
CCTCATGGCAGGCGGTGGGGTGGAAGAATTTTTTAGTATTTGCCTTTTGCCAGATCTTCTGTTACATCTTCCCTGCTGTCGGTAGCTCAGCCAGGCAGGC
AGGAAAGTAGAAGGAATGAAGGGCTGTTTACCTGGGTTTTCCAGAGGTTCAGCCCAGGCTAGAGCCCCAGCTTGGCCATGCTCTGGCCGTGCAAGCCCTG
GCAGCTTTCTGTGAATTGGGGAGGACGTGGGAACAGTGCCTACCTGGTGGACCGTGGGAAGACTGAAAGAGAAAACCAGGCAGGGCACTTAGTGCAGCCG
CTGGTGGAGGCAGTGGTTAGAGTTCACTCGCTAGAGGGTCCTTGTGATAAGAGGGTCCTTATGATAAGAGGGTCCTTATGATAAGAGGGTCCTTATCATG
GCCATTTTCCTTTGATCCAGATGTCTTTAAATATCAGAAAAATAACGCTTTTAGTCCCAACCGCCACATCGGAATCAGTTCTTATTCCTTCTGGCTACAA
TGTCCAACATAAGTTGAACAACATAATTTGGACAACAGAAGGAAGGGTTGTCATGCTAGCCGGAGATGACTTCTAGTTAAGAGGTCTGAGCATTTTCCAC
GCACAACCAGTTATTCTCAACGGAGGGCGGACTCTCCATACGAAACAAGCAGAGCCCTGGCAGAGACTGCAGGGCATTTGTAAAACTCAAACACCACGTT
GATCTCACTGCCACGTTCTTTCCAGTTACACGCAGGTCTAACATGCTGGCATAAGACATTGTCTTAATCAGAACACTTTTAAAGCTTTTTTTTCCCTTTT
TTCCAATTCAAAAAATTAATGCAGTACAGGTATTGATCCCACCGAAATTGTTCTAATTCAGTCATGACACTTCATGTTTACAAAGAGTTGATGACTTGGA
AAAATACTCTGTAATGCTGTTAAACTTAAGAAACAGAATCGGGCCGGGTGCAGCGGCTCACGCTGTCATCCCAGCGCTTTGGGAGGCTGAGGCAGGAAGA
TGGCTTGAGAGCCGGGCGCAGCGGCTTCCGCCTGTCATCCTAGCGCTTTGGGAGGCTGAGGGGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGG
CTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGCACGTGCCTGTATTCCCAGCTACTCGGGAGGCTGAGGCAGGA
GAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATCACGACACTGCACTCCAGCTTGGGCGACAGAGCAAGACTCTATCTCAAAAAAAAAA
AACAAAAGAAACAGAAACAGAGTCAGAATTGTAGACCACGTTCCTCCTGACGCTAACACAGAGCTCCCATTTGACCCAGCTGTTCGCTCCTCGGTATTTA
CCCGCAAGAAACAAAAACACACATCCACATTCAGACTGATACACGGTGGTGATGGGGGTACAACAGTGTGAATCCACCTGATACCACAGAGTTACACACT
CAGAAATGGTTAACATGGTACATTTTATTGTATGAGAGTTTCACCACAATGAAAAACTTGTACCTGAATGTTCAAGCAGCATTATTCGTATAGTTAAAAA
GTATTAAGAACTCAAATGTCAATTAGATAACAGGTAGATATACAAAACATACTATATTCAGCAAAGGAATATTATTCAGCCATAATATAGAATGAACATT
GATTCATCCTATAGCACAGATGAAGCACGATGCTTCTGAAAGAACCGGACAAAAAGTCCACACGCTGTGTGATTCCATTCATACCAACGTCCAGACTAGG
CCAGTCCGTACAGACAGGATGAATTACTGGTTGCCGGAGGGTGGGGAGGTTGGGGGAGATGGGGAGGAAGTGCTGATGGGTACAGGGTTTCTTTTTGGGA
TGATGAAAGTATTCTAACATGGATTGTGGTAATAGTTGTGTAATTTTGTGAATATGCTGGAAACCATTGAATTGTATACTTTAAATGGGTAAGTTGTATG
GTAAGTGAATTATATATCATAGCTGTTAAAAATATATACGATATTTTAATTAGACATAGAAGAACATGAATAGAGACTAGAAATATATATATGTATATAT
AACAAGGTGTTAATGATTTTCTACTAGTAGACTGGTAGATTTGTACTAAGTTTTTTCTACTATATATACTTTTCTGTAATTTAGGAAAACCTCCCTTTCA
ATTTTAATAACGAGGGAAAATTTATATTTAAAATATCAAAGAAATAAAATTAGTTGCAACAT

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.