Detailed information on ENST00000619697

lncRNA-RNA interactions

Number of interactions: 25

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000470361 potassium large conductance calcium-acti... processed transcript ENST00000619697 567 285 noncoding Trans
ENST00000475187 THO complex 5 retained intron ENST00000619697 654 285 noncoding Trans
ENST00000569455 cadherin 13 processed transcript ENST00000619697 630 287 noncoding Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding ENST00000619697 685 291 UTR3 Trans
TCONS_00006081 processed_pseudogene novel protein coding ENST00000619697 603 285 UTR5 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000619697 673 284 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 h... novel protein coding ENST00000619697 629 284 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 h... novel protein coding ENST00000619697 629 284 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 h... novel protein coding ENST00000619697 536 283 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 h... novel protein coding ENST00000619697 629 284 UTR3 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 h... novel protein coding ENST00000619697 629 284 UTR3 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 h... novel protein coding ENST00000619697 629 284 UTR3 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 h... novel protein coding ENST00000619697 629 284 UTR3 Trans
TCONS_00114628 phosphoribosyl pyrophosphate synthetase-... novel protein coding ENST00000619697 628 284 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000619697 614 284 UTR5 Trans
TCONS_00148048 potassium voltage-gated channel, subfami... novel protein coding ENST00000619697 601 285 UTR3 Trans
TCONS_00150689 ectodysplasin A receptor novel protein coding ENST00000619697 615 284 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000619697 603 284 UTR5 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000619697 621 279 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease ... novel protein coding ENST00000619697 644 284 UTR5 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000619697 607 285 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000619697 625 288 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000619697 608 285 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000619697 608 285 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000619697 617 284 UTR5 Trans

Sequence

>ENST00000619697 (1419 nt)
CTTTCCTTTAGGCTGTGGGTCAGAGTCTACACTTCACTAAACCTGGGATGGAGGCGTGGAGGACTTGCTTCGCGGCGTTTGCGTCCTCGCAGGCGCCTCG<br />CAGGGCTTCCTGCCCTCACGGCGGGGGAGTAGCTTTGGCGAAAATCAGCACGAGTTCTGCAGTTTTTCCAAGCGCTTTTAGGGTGTAATCGTCCCAGGTT<br />TCTAAGCCAAGGCCCGGAGAGTTGACCCCCTCGCAACAGCTTGTGTGTCCTTGCAGCGCCGCGGGTGCCACCTGGTCTCCGCCTCAGCGCTGCCTCGGCT<br />CCTTCGGTTCCCACCAGCGGGAACGACCGTCCCCACTTTCAGCTTAAACTCATCTGTCCTTCTGGATCCAGCTCAGAGGTCTCTTTGTGATGCCCTCCTG<br />GAACTTCCCCCCTAGTAATCCTTCCTTTGTATTCCCGTGGCTCTTTGATAATAATGGTTGGAGTCCTGAACCCGACCCTTTGTATCGGACCGTGTTTGTC<br />ATCTCCAGTGCTTTATGAAGGCCTTGAAAGCAAGGTTCAGCCGTCTGTATTGGTCATCTTCCCATTGCCAGTGCCTACGAAGGGCTTGACCCATTCATTG<br />TTAGACGCTCAGTAAGTGTGTATTGAGGCAGCCCTCTGTGCCACTCCAGGGCTCTTTCCACTAAATCATGAGTATGTTGGTTTACCAGATGGAATGAGTA<br />GCCTCTTCTTTGGATACATAAACACCCGATGGATATTGTGGGTCACTGTGGAGGGAGAATGAACGTATGGGATCCCTGACCTGTGGTTACTGGAAAACAG<br />TTGACATTTAGAGAGAGGCTGAATTCTTGGGCTTCCCGTAGCCCCCATCCTGAGTGTGCCAACAGGGACTAGAAGCATCTCTAGTCTGCAAAGCGAGGAA<br />CAAGTGATACTCTGTCCAATTTTTCCAATATTGTTATACTCATGAATAGAGATTAATGAAATTGAAGAGCATATTCAAGAGAAAGACTAAAGGAGAAGTC<br />GTCTGCCCCGTGGACAGGCAGCTTGAGTGGTGCTTGAGAAAATGTACATGAAATTGCTTGTTAAAAAATATTCACGCCTGTAATCCCAGCTCTTTTGGGA<br />GGCCGAGGCGGGCAGATTACTAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCCCTACTAAAAATACAAAAACAAAATTAGCCGG<br />GCGTGGCGGCGGGCGCCTGTGGTCCCAGCTATTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAACGGAGATGGCGC<br />CACTGCACTCCAGCCTGGGCGAGAGAGCGAGACTCTGTCTCAAAAAAAAAAAAATTATATATATATATATGTATATATCCATCAGAGACATGTAAAGGAT<br />TAAAGTACGATACACAAAG

Expression



Full and truncated open reading frames discovered in ENST00000619697

In silico ORF/peptide predictions
>peptide 1 (53 aa)
MVGVLNPTLCIGPCLSSPVLYEGLESKVQPSVLVIFPLPVPTKGLTHSLLDAQ


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT053563 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q6UX73|CP089_HUMAN (Evalue: 1.0E-19)