Detailed information on ENST00000621040

lncRNA-RNA interactions

Number of interactions: 20

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000276431 tumor necrosis factor receptor superfami... protein coding ENST00000621040 531 278 UTR3 Trans
ENST00000450928 antisense antisense ENST00000621040 557 296 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, al... protein coding ENST00000621040 537 291 CDS Trans
ENST00000517408 antisense antisense ENST00000621040 518 299 noncoding Trans
ENST00000549365 DNA-damage regulated autophagy modulator... nonsense mediated decay ENST00000621040 575 288 CDS_UTR Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000621040 506 282 CDS_UTR Trans
ENST00000583694 FYVE, RhoGEF and PH domain containing 4 protein coding ENST00000621040 503 293 UTR5 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000621040 614 273 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000621040 614 273 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000621040 614 273 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000621040 614 273 UTR3 Trans
TCONS_00107851 transient receptor potential cation chan... novel protein coding ENST00000621040 610 287 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 h... novel protein coding ENST00000621040 511 293 UTR5 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000621040 543 294 UTR5 Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding ENST00000621040 612 277 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000621040 612 294 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000621040 634 292 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000621040 634 292 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000621040 634 292 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000621040 629 283 UTR3 Trans

Sequence

>ENST00000621040 (3437 nt)
ATGCAGCCACAGGTAGTCATCGAATCCGGCTTCCTATGCTGTGCAATCAACAAATCAAAATAACTTGTGTCATCATTAGAATGTCAGATGTGCTTCTACG<br />AACTAAGCTGACTCTTTTAATTCTTTGGCAAAGGGTTGGCAAACTAGGACTGTTTGCCAAATTCAGGCTGCCTCCTATTTTTAGAGTCTTCCTGAAACAC<br />AGCTACACCCGTATTATCCATGGCTGCTTTCCTGTCACAGTGAGTAAGTAGCTGGGACTGAGAAGGCATGGCCTCCAAAGTCTAAAATATTTACTCTCTA<br />GCACTTTGTAGAAAAACCTTAGCTAGGCACAGTGGCTAACGCCTGTAATCCCAGCATTTTGGGAGGCCAAGGCAGGCAGATCACCTGAGGTCAGGAGTTC<br />CAGACCAGCCTGGCCAACATGGTGAAATCCCATCTCTACAAAAATAAAACAGTTAGCTGGGCATGATGGCGGGTGCCTGTAATCCCAGCTACTCGGGAGG<br />CTGAGGCAGGATAGTCGCTTGAACCCAGGAGGTGGAGGTTGCAATGAGCCAAGATCATGCCACTGCACTCCAGCCTGGACGACAGAGTGAGACTCCATCA<br />CAAGAAAAAAAGAACTTTGTCAACCTCTGTCTTAGGGCGCCTTGTCACAGGCTTCGGGTCAGACGGATTCAACCTTGCATCAGCCATTTGTTAGCCAGGT<br />CACTCTGTTCTTTGTCTGTAAATGAGATTGATCGTTGTTCCCACTGAGAGTGTCAGCTCCTTCCCGTAGAGCAGGCATGATGATTGTACTCACCTCTGAC<br />ACCATTGTGAGTGCCACATTCCTTCCCACGTCCTTGTCACTGTAAGAGATGCCCACCTGAGCACCAACCCCAGGTTATCTTCCCCTTTGTCTTCCAGCCC<br />CCCAGAAACAGCTACGACTCAACCTACCCAATCATTTCATCATCAGATTGCCACTGTCTCTAGTTCAGGTCTCTTGGAACTGGCACTCAGAAATCTCATA<br />ATAAATCCTCTTGAGGCTTCTCATACACTCGTCTTCTTCCAATCTTCTTTCCCTCAAAATCTCATATTTTGGTTCCACTTCACCCACCGTCATTCTCCAT<br />ATCACTCCCAGGAGTTAGGCAAAAAGCCCCTTCCGTTCTTCCGTATGTTAAACTTAGAATCACTCTGTTCCCTGCTCTGCGTTTCTATTTTTTGTTTTTC<br />CTCCATTTACTAGTAGCTTAACACTTTCTAACAGTGTTCTTATTATTGATACGTATCTATCTCTTCCATAAGCTTATAAGGTCACGGATAATACTTCTCA<br />TTGTAGTACGTAAATGACGTGGGCTAGATATGAGTTGAATAAACAGTTATACCTGTAAATTCTTACAGAGTGAAAATAAATTGTTATACTTTACAATTTG<br />TTTCTCTCTTTAGACCATTTCCAGGACTTGTGATTAATAACCAGCTGGTTGATCAGAGTGAGTCAGAAGGCCCCGTGATACAAGAATCAGCTGAACCAAG<br />CCAGTTGGAAGTTCCAGCCACAGAAGAAATAAAAGAGACTGATGGAAGCTCTCAGATCAAGCAAGAACCAGACCCCACGTGGTAGACCTCTTCCCTCCTA<br />GGGTAAATCAGCTTCTGTGTCAGGGATGCTGTGTGGTGTCCATCTGAACCCCCTGCATACGCGTAGCTAATGTGATCTCCCCACTTTCACATAAGATGGT<br />GGCCCTGCCTTCAGGGAATGTGGGAGCCAGGTGGGAGCCTTCCCGGATATTTAAGCTAGAAGATTCTACAGGGAGATTCTCCTTGGATCAATATATGTCT<br />CTCAGTCAAAGATGTAAAAGCACTTTTGCCTTAAAAAGAATGTTCTGTTTCTAAATAGAGTCAACGTTGTCCTCCTCATTGGAATTCACTATGAGTCAGA<br />ATCATTAGACTGACTTTTTTTTTTCCATAGTAATAGTATTTTGCAGAGTCTCACAGAGCTGCAGATCTTTTGTTCATCTTGCAGAGTTAACAAGTCTGAT<br />CCTGTTAGTCCAGATTTCTTAAATTTGGCCAAGTTATAATAGGAGCAGTAGCTTGAGACCCGAAGTCAGGAAACTTTGACAATGGATTTTTTTTTTTAAT<br />CCAGAGACTTGTACTGGAATTTGCCTTACCCTGTCAGCTCATGGACTTAAGGTTTCATCCCGCTTTATGAGTGCTTCTGAATCCAAGTCATTGTTACCTG<br />AATTTGCAAATTAAGTTGTGATATTCGTGACTGTTAAATTCCTGTAATTAGATTAACCTCTTTGCTTGCTTGTTTGTTTTCTCTCCTATTTTAGCTTAAA<br />GTATCAGTGGTTGAGAAGAGCTTTTCGGACCTGTTACTACCCCAAGCTGTGTAATATACTTGTATAACAGAAATACCTTCTATACAAACCTTTTTTTCTA<br />CTTTTAGATAGAAATGTCTACTTTTTCAGCAGTTCTGTGAATTAAAGAGCAGAGTGACTGTGGGTCTGGAATGGCTGGTGTACTTGGGAATGTACTATCA<br />GGATTTTACAGCAATGCTGGGAAATGACAGGGAAAATGACAGGAATGAATCTCACCAGATTTTTTATGTACTCAGCAGAGCCTTGAGTTACGGTGTTTAT<br />TTTCCAATCAAGTGAAGATATCTCCTACTTCTCCTACTGGAACATCTCAGCTTCTGCAGTGAAGAAAAATTCCTGTGATAGTTCAGTTCTTTAGTTTTTC<br />TATTTGAAAAAAAAAAATCATTTAAATGATCCTTTGTTCACGGCTCTCCTTAATGACTGAGTGAACAGTTCCTATCTGTATATTTGACTAAACCTTTTCC<br />TAAGCTATCTCTCATGGTTCCTATGTTTTTTTATCATAATTAAAAGCAAAACCATCTGGATCACCTAACAGTCAGAGGTCAGTATCTCAGCGTGTGAATT<br />ATAGAGGAAATACAGAGAGAACCTCTTCCACTTTTACTTTTCGTCCAAATAAAATGCATGGTGTACCAGAAGTTGAAGATCGGGTTGAGGATTGGGGCTA<br />GCTCGATGACACTAAGGCCCCAACATCGCGGGACCTGCTGTGGCGCGGATTCTTAGGAACGCTGTTCTAGCCGGCCCCCTCTCCAGGGGTCGCCGTGGCC<br />GGCATTATTTCCTAGTTCTTCTTGTAACCCTGAGGTGCCAGCGCGGGGAGTGAGGAGGGGTCAGGGGGCTAAGGATGCAACCTCTGACGTTCTGCGCCTT<br />CCTAGGAGAGTCTTACATGTGTTGAGATTTCACAAGCAATGCGAGTTGTAAAATACCAGCTCTACAAGAAGCTAGGCTCTGTGACGGCATAGTTTTCAGT<br />AGCTTTATCACAATATTCACAATGGAGAATTATATGACATGGTAGCAGAAATAGGCCCTTTTATGTGTTGCTTCTATTTTACCTCAAATTGTAGATATAG<br />GGTAATCAATAAAATCCATCCATGCCTTTCACACACT

Expression



Full and truncated open reading frames discovered in ENST00000621040

In silico ORF/peptide predictions
>peptide 1 (82 aa)
AATGSHRIRLPMLCNQQIKITCVIIRMSDVLLRTKLTLLILWQRVGKLGLFAKFRLPPIFRVFLKHSYTRIIHGCFPVTVSK

>peptide 2 (67 aa)
MSQDHATALQPGRQSETPSQEKKNFVNLCLRAPCHRLRVRRIQPCISHLLARSLCSLSVNEIDRCSH

>peptide 3 (52 aa)
MVALPSGNVGARWEPSRIFKLEDSTGRFSLDQYMSLSQRCKSTFALKRMFCF


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT121485 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q6B4Z3|UTY_PANTR (Evalue: 3.0E-30)