Detailed information on ENST00000622896

lncRNA-RNA interactions

Number of interactions: 43

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000622896 671 294 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000622896 540 278 UTR3 Trans
ENST00000295822 eukaryotic translation initiation factor 5A2 protein coding ENST00000622896 600 291 UTR3 Trans
ENST00000336505 suppressor of cancer cell invasion protein coding ENST00000622896 628 287 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000622896 613 295 UTR3 Trans
ENST00000399120 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000622896 516 295 UTR5 Trans
ENST00000427746 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000622896 516 295 UTR5 Trans
ENST00000507518 hydroxysteroid (17-beta) dehydrogenase 11 processed transcript ENST00000622896 506 210 noncoding Trans
ENST00000569455 cadherin 13 processed transcript ENST00000622896 505 284 noncoding Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000622896 610 261 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000622896 610 261 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000622896 610 261 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000622896 610 261 UTR3 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000622896 635 283 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000622896 635 283 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000622896 685 288 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000622896 606 289 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000622896 606 289 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000622896 591 292 UTR3 Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding ENST00000622896 600 296 UTR5 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000622896 613 295 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000622896 613 295 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000622896 613 295 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000622896 629 294 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000622896 629 294 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000622896 616 265 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000622896 616 265 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000622896 539 296 UTR5 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000622896 507 277 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000622896 602 283 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000622896 602 294 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000622896 657 294 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000622896 628 293 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000622896 657 294 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000622896 657 294 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000622896 628 293 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000622896 628 293 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000622896 630 286 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000622896 671 294 UTR3 Trans
TCONS_00161498 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000622896 603 282 UTR3 Trans
TCONS_00180671 transketolase novel protein coding ENST00000622896 603 277 UTR5 Trans
TCONS_00180672 transketolase novel protein coding ENST00000622896 603 277 UTR5 Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding ENST00000622896 628 287 UTR3 Trans

Sequence

>TCONS_00249683 (872 nt)
GTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACTTGAGGTCAGGAGTTCAAGATCAGCCTGGCCAACATGGTGAA
ACCCCGTCTCTACTAAAATACAAAAATTAGCTGGGCGTGGTGGCAGGCGCCTGTAATCCCAGCTACTTGAGAGGCTAAGGCACGAGAATCGCTTGAACCT
GGGAGGCGGAGGTTGCAGTGAGCCAAGATGGCGCCACTGTACTGCAGACTGAGTGACAGAGCAACACTCCGTCTCAAAAAAACAAAAAAAAAACCAACCA
AACGGATTTTCACTGAACACTGAAAGCATAAAGAGGAAAAAAAAAAGATGAAAGGGAGGAGATCCTTTTGAAGCATTTAAAAAATAAGCTGCTCGCTTAC
CTTGTGATCTGTTCTTGGATGGCTTCCGTATTGGCCTCTGCAAAAAGGTACAGCATGGTGCAACTGAAGTAGTGAGTGTGGCTATTTGGGTACCGGAGCT
GATTTGCAATTGCATTCAAAAAGAGATAGCGACCTAGAAATTAAGAAACCTTGACTTAGGACTTAGTCTGAAAGGCCAACATGGGAAGACAGTTCTAACT
GGCTAGGGTTTGGGTTTCTGACAGAGGCTTTCAAATTAATCTTTGGTTTAAAGCAGTGGTTCTTGGGACCCCAAAGAGTTCTCATTTCTGTGCGTTTTAT
TTCAGAATTTTCCACATTAGAAATTAGATTTTAAAAATATTCATTTTTAAAAACAGACCCACTATGTGCTAATGTAAGAAACATGAACTATTTTCTGGTG
ACACTCATCACTAAGTCTTTCTACATTTTGCAGATCTCTAAGTCTTGCTTAATAAAAGACAGCTGGATTCTCA

Expression



Full and truncated open reading frames discovered in TCONS_00249683

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.