Detailed information on ENST00000623374

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000623374 602 288 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000623374 602 288 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000623374 615 288 UTR5 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000623374 559 271 UTR5 Trans

Sequence

>TCONS_00135884 (7631 nt)
ATGAGCCACTGTACTGAGCTGTGCCTACTTCAAAAGACTGAAAATAAAAAATCAATAAATCTTTGCCAAATTAAAAAACAAAACAATAGTTTCCAGGTCT
TAGACAAAGACAATTCTGTGTCATGAAGAGTGGCAAAAGGCTTATTTAGCTGTTAAAATGATTTGCTTATATTTCAAAGAAGCAGAGAAAAAAAGATACA
TATAAAAGTTTTCCAGGCCAGGCACGGCTGTTCATGCCTGTAATCCCAACATTTGGGGAGGCCAAGGCAGGAGGATCTCTTGAAGCCAAATGTTTGAGTC
CAGTACAGGCAACATGGTGAAATTCTGTCACCATAAAAAAATAAATAAAATAAATATGGCTGGACATGGTGGTTCACGCTTGTAATACCAGCACTTTGGG
AGTCGGAGGCAGGTGGATAATGAGGTCAGGGGTTCGAGACCAGCCTGGCCAAAATGGTGAAACCCTTTCTCTCCTAAAAATAATAACAATAAAAAATTAG
CCAGGCATGGTGCTGTGCGCCTGTAATGCCAGCTACTCAAAAGGTTGAAGCAAGAGAATTGCTTGAACTTGGGAGGCGGAGGTTGCATTGAGCTAAGATC
ATGCCACTACACTCTAGCCTGGCCCACAGAGCAAGACACTGTCTTGAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAAGT
TAGCTAGGCCTGGAGGTGCATGCCTATAGTCCTAGGTAATTAAGAGGTTGAGGCAGGAGGACTGCTCAAACCCAAGAAGTTAAGGTTATAGTGAGCTATG
ATTATGCCATTGCACTTCAGACTAAGCAAAAGAGTAAGATTCCATTTCAAAAAATTACTAAAAAAAGTTCTCTAAATTACATTGTTTAAGAAAAGGGAAA
AGAAAAAATATCTTTTTTAATTTTCAAATGGGAGAATAGAGCCTCTCATTTCTAATATGTATTTCCTTCTGCAAAAACATGGTCTAGGCCCATGGTCTTG
AACTACTGGACATCTGAATTTTAGTAGGTGCTGGATTCAGGCAACTGAGGGGTGGCTTGGACACACTAAGTGCACGTAAATAAAAGGTTTGAGGTGAACT
AAAAGGTAAAAGAGGGGAAGGTGCTATTAAGAACCCACAGTTGGGAGACAGTACAGGGTTGGTGGAAGGACTGGTTCATGCTACAGATACTGACCCAGGT
GAAACTTTACTCTGACTTATTTCTGTGTCCATGCAGGAAGACGAGATTATGATCAGGTGGCACAGAAACCTGGGATGGTGAAAAAACCAGGTTGCCCCTG
CAGATTCGGTGTCTGAGGTAGAACGTATGCCAGGGGTCTTGTAGGCACATGTGTGGGTTTTTGGTGGGAAAGTCTATGAGGAAAGGTAGCATGGGCAACA
ATCTTGATGCCAAAGCCTTGTCCTGAGAGGGGCTTGGCCACATCAACATGCAGTGTGTATGTTCAGTGGGTGAAAAACCTGTGGTGGCCTCAGGTTGGCA
GGAGGGTAGAAGGCATCTGTTCTCAGAACTTCTTCCCTCAGAGTCGTCGGTCCTTCTTACCATGGGAGAATGCCTGGAACCACAGGGCAGTGCATGGTGT
AGCAGCCTGTGTGCAGAGCAGAGCCTACCTTCCCCGAGACACCTGGAGTCTCTCTCCAGCAGAGGCCCCCACATTGTCTTTCTCCTTACAACACTTTTGA
TCCTAAATGTGTAAAGTTCCCTGAAAACCCACTGCTTCTCCAACACCCATTTGTTGCCCCAAAATTTAATTCTGACACAACTTAGAGTTCACACAGATCC
CAGAAATTCAGGGCTCAGTCCCACATCACCCCTCTCACTGTAGAGGAGAGTTACACATCCCTGAAGCCCATCTACACTTCTGAGCTACCTCCTATAAATC
TGAGACTAGCATAAACCCCTTTTCAAGTTAAATAATTTGATAGAATTACTAAAAAGAAAACCTCAACAAATAACTGTAATTATATTTACTACTTTATTAT
AAAAATATAACTCAGAAACAGCCAAATGGAAGAGATGTCTAGGGCAAGGAACAGTTGTGGGTGAAGGCAATCCTGGAAATAGCTATATTTAAAGAAATTC
CCCCATTCTTTGCATTCTCAAAGAACAGCTTAGTGAAGAGAAACGTGCTTCCCCTGATGACTTTGAGGATGCTCCCTGCTGTTTTTTTAACCTATCACAA
AAATGGACACAGATTGCAAATTCCCATTTTTAAAAATGAACAACCATTCAGTAATTTAGTCTTCAGTGGTCCAAATAACATACTCTTAAAGAAACTTTGC
TTGTTTCTCTTCTTCCAACCAGCCCCTGAACTTTGACTCACCCACAGCTTCAGCAAACCTACAACCCTTATTTATACATACCCCTCCTAAGAACAGGCTG
AGTTCAAGGTGAAACATTATCTTATCTGGGATCGCATTTTGCTACCCTCCATCGTGTGCTTCCTTTCCAACCTTCTTTGTAAACTTGTTTTCTCCTCCCT
ATGAAATAAGGCCCTTTTCCACCTAACCTTAGAGATACTCAAAGATCTAATCATTTGTACTTTTTCTTTGTTGCAATACTTCTTAGGTAACTTCTTAGAC
CAAGTCTAGAAACAGTCTGAGGACAATAACAATTCCATTCTAAAAAGAATCTCCCAACATTTCTTCTATCTCAACCTCAACTGCATCTGCCTGTGAACTT
CCAGCTTACCAAGGCTCTATATCTTCTGGCAGTGACAAAGGCTCCTTCCATGGTTGGTGTGAGTAGGCTTGGACACCTGCAGGGCAGACACCCAGGAATA
ATCAACTGGGCCTTCAGTGGTCCTCTTTTGCAGGGTCAAGGTGGGCCTTAGCTTTTAGTCAATGGTCTAAGACTTCTATTTACCAGTTAGTCATTCAGTT
AGTTTTCAATTCAAAAAATACTTCATGTTTGAAGAATCCAGCAAAAATTATTCAAATCTAAGATATAAAAGAGAGGAAATTACAGCCGGGCATGGTGACT
CATGCCTGTAATCCCTACATTTTGGGAGGCCTAGGCGGGCAGATGACCTGAGATCAGGAGTTTGAGACCAGCCTGACCAACATGAAGAAACCCCGTCTCT
GCTAAAAATACAAAATTATCCAGGTGTGGTGTTGTATGCCTGTAATCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATCGCTTGAACCCAGGAGTTGGAG
GTTACAGTGAGCAGATGTCTTGCCATTGCACTCCAGCCTGGGCAAGAAGAGTGAAACTACATCTAAAAAATAACAGAATAAAATAAAATAAAAACATTAT
AAGGGGCTTATATCTTATAATTCATCAAGAAAAGCCAAAGTATCTATCCCTTTCAGAAAATAAACATGTAATTTAATTATGTTCAAAACAAATCATTTAG
TAAACAATTAATCATATGTGAACACTTCCAGGAGGTGCAAAGTCCCAGCTCCTAAAACTTAACATTACCCTCAAACACCCAGATGGCAGCATATGGAATA
GAGTTATTCACTTTCACAAGTTCTCTCTTTTGAAAAAAAGAATAACTTATGTGATAAATTTATGTAATTTGACAATTAATCTACCTCATGTGCTTGCAGA
TATGTATTCATTTCCTACCACCGTAGTGGAAGAGAGATTTTCCCTATCTTTACAACTGATAGCATTTCCAACAGTAAGCTGTGAGATTCTGCTTGAAATC
ACCTCTCAAACAAATAAAAAACAGACCTGGGAGACATGCTACACTCATTCTGCTGAGGAAATAGGGCAAGAATATTTTCTAAGACCCCGAACTCCAGATA
TGCGATGGGGCAAATCCTGAAGCGTACATGGCTATCTCTCACAGCTAAAGCACCCCTCACCCCTATCCAGCGCTTCTTACCCCTGGCGCAAGAGAGTCAC
CTGCGGGGAGGAAAACTATCAAAATCCCTTAAACCCAAGTTGTAACCGCACAACTAAATCAGAATCCTTGGAGCTGGATCTGAAAAAAATACGGTTGAAA
GTTGTGCAGGTGATTACAATGTGTAGGCAAGCCAGAAAACCATGGCTTTAACGAGCAGCTTTTGTTAGAAATGATTTCTCAAATGAATGTAAAAACGTTT
GCTGCTGAATTGTGACCTTTCAATTTTACCTGCTTTTCCTGCAAAGTATATTTTGCAGACCCAGGCTGGCTTGTCCTTCTGTTCATGGTTCACCCAGTGC
CGTGTGTGCTCAGTGCATCCTGTGCACGGGTCACTGTGCTGTGTGCGCTGGCCGGGGTGAGCATCATTCTTCGGGGAGAACCTTTCTGAAAACAAAGCTG
CAATCCAAAAAGTTAAAACCATGCTACTTACTGTACTGAGGTAAAAATTAAAAGACCTAGGGGACTCTTCCAAAAGTTAAAACGTAAATAAATATCTTGG
AACATTAATATACACCTGACGATGTCCTGAGTGAACACGCCCCACTTTAAAACAAAACAAAACATTACTATTATTCTAAAATATTAATTTAGGATTGTTA
TGCAAATATGTACTATTTAAATATTTATTGATGAATAACATGCATACAGCAATATAGGAACAAAATATTTATGGAATGCTTGATGAATTATTACTAAATA
AATACACTTGTGTATGTAAGAATCAGATTTGCTCATGCCCTTGACACTTTCTCCTTCCCAAAGGTAACCAAGACCTTAAGAGCTAAGTGTAGATAAACTT
TGTCATTTTCTACACGTGTTTTATTACAGAACATTAAAAACGTATACATAATACAAAAAAAGGATAACAGACCAGTCACCCAGATTTAACAGCTACTAGT
CATGTGTCATTTTTGTTTCACCTATACTTCCAGCCATTTCCACCCCAATTTCATTATTTTTTAGCCTTTTTGGATAAAATGTATATTCATTGCAAGGTAC
AATGTGAACTGTGAATAGTAGAGAGATGGGGTTTCACCATGTTGACCATGCTAGTCTTGAACTCCTGTCCTCAGGTGATCCACCTGCTTCGGCTTCCCAA
ATTGCTGGGATTACAGGCATAAGCCAATATACTCAGCCTGAGAATTTTTTCATACTTCTAAGAAAGTACAAATCCATAGGGCACATGAGAACTGCAATGT
CTATCTACAGTAAATACAGTTTGATAAATAAAATGAAAGGCAATTGACCTAAGGTGAAAAGAAAAACAAAAAACAATCAAAGCATGGGTACTATGTGTCA
TCTGTAAGAGCATTTGGTTAAGAATAACAAACAAACCAGTTTTATCGTTTTAATAGCCGAAATTGGCAAAATTTCTAGTTTTTCTTTCATAGGAATGCTC
TTTGCAAGAAAAAATTTTCATATAGTGAGAGCAAAAATGGCAACCATTTGCAAGTAAATGTCTTATGAAATTAAGTAGCAGATATCAAGCTCATGACCTT
CAGATAGTTACCCCTAACTCAATCACTTACATAGCAAGTGCAGATAATTTTCATAGCTCCCTATTAAAATTATATTTGAATGCCCTTACAAATTGTGACT
GTTTTTAAATAAAGTTGACCAACTAAAATTTTGTATATGACATATGATAAATTCCCCTTCAAGTCACCTTACATTTACTTAATTTTATTAGGCAGTGTCT
GTCTACCACCCAATAATACTTGACGATTCTCCCTCCATTTGCACAGGCATCATAGCTGGGAAACGGATTCACAAGACCCAGGCTGTTCCCTACATATGTT
TCCTCCTCCGACATCAGTTCATCAGTCAATCAAGCCATGTGAGAGTGGAGGCCTTGTATTCCCTATTATTCTTGGGCACTCTACTCCAAGTAGGAAAAGG
CCAGGAGGTCCTGTTAAAGGATGCACTCAGAGCCCGGGCTCCCTAACATATGAGAGTGCTAACCAGCAGGTGTAGACTTTTCAGGAGTGAAGAATGAGGC
AGGCATTCCAAACCTGGACCTTCATCACCTTTTGTTTCATCTCAAGACAATTCTGAGGGACTGTTTTGGAGCGTGTCTGGAAGGTGAACCTTGAAGAAGA
GTGTGGGCTTTGATGTGACTCAGTTGAGATCTTTCATGGGGAGGCAGGAATTCAATGCCCAGAATCTGGGCTGGTGTCTTTGAGGTCAGTAGGTTGCGTC
TTTGTATCCAAGTCCATTGTTACTAGGTTGGAGGCTGGAGATTCTAAATGGCTTCCAGACCATCTCTCTGATTCTCTTTGGGAGATGGGGTCTGAAAGAC
AATGTCAGTAGTTTTGGGAAATTCTAGAAAGTGTGCTTGGAAACGTGGGAAGAGCTCTTGCCTAGTGCCTAAATGCTCCATTTGCAGCTCTAGCCAAGTA
GATACTTGGTAGGTATAGAGCCGGGTTTGCGTTTATATCAGCAAAACCTATGTCAGAGTTGAAGAAGTAGTCAGGAAAAAGCGTCTTGGTCGCAGGCCGG
GGAACATCTTAAAAGCAAACTTCTAGCCTGCTGACTCTTGGCAATGAGTGTTGGATCCTGGCTAAAGTGCCTTGAATGCAGCATGAGGCCAATCCATGAA
TCCAACTTCTCATGGAGAAATGTTAATATTTTTTCAGTTTGAATCAATCAGGGTGAAACTACCATGCTATTGGTTTGCTTACTTTTTATTATTTCATGTA
AAATCTAAGACAAAATACATTAAATGCTTATTGACATATGTATTTATTCTTCACCAGGCTGATAATATCTGCCTAATTTTAAACTTTCTTCCATTTTGTA
GGTTTCAACTTATTCTATTGTAAGATACTGTTAAATCTAATAGAGGCATTGTCACTTTTACGTATAATTTTATTTTATTTCATATATTTCCTATTGGCTT
TTTACATTTAAATTATGGAGCACTTCATCATATAAAAAACTTCAATTATATTTAAACAGTAAGTCTTTGGATTTTTTTGCCTTGTAATTTCCATATTACA
TAATAATGAGATAAACATTAATGTTTTCAGGGTACTTTAAATTTTAGATAATTACTCATTGTATTCATGTGAAATTTGTTTTTACTGCATGTGTGGGTTG
GAGGACTGTTTTCACTTCTGATTCATCTTTACTCTTATCTCATCAGAGCTCATACCTCTTGTAGTTGGGGGATTGCAGTTTATAATTCCAATAAATGGGG
CAAATTCAATAATAACATAATACAAATGAGTTTGAATGCAGGACAGGTCTTCAAAGCATACACAACATGGGCCTACATATGTACAACAATAATAATTTAT
AAGTTACTGTTTGGATGGAAAGTAAAAGTACAGAAAATTTGTTAAAGGAAATTAAAATGGAGATCATGTCTCAATAATCTCTGAGCAGACAAAATTAGTT
AGGTCTCATAAGTGATCTCAACCTCGCTTGATTTGCAAATACAAACAAAACTTAAATTATTTCTTGTAGCTGCATATTGAAAAAAGAGAAATGAAGCTCA
ACCAGTCAGAAGTAGCCAACAACCTTATATAAATAGAAACTGTCCAACAAGGTAAACAGACAAACAAAAAACAATAAAAAAAGTTGTGCTACCACCAAAT
GATTTCTTTGTTTCTACATTTTTCAAATAAATACTTGCTTCTTACACTGTCAATGAAGCACTCAATATCTTTCCGTCTGATATTTTATAATTTATCAATT
GCTCTTACTCAAATAAACACTTTGCAATTTCA

Expression



Full and truncated open reading frames discovered in TCONS_00135884

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.