Detailed information on ENST00000624433

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000441159 family with sequence similarity 115, member C protein coding ENST00000624433 911 589 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000624433 549 405 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000624433 549 405 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, member C novel protein coding ENST00000624433 911 589 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, member C novel protein coding ENST00000624433 911 589 UTR3 Trans

Sequence

>TCONS_00225248 (687 nt)
TGGCTGCATGAATGTCTTCCTTTGATAAGTGTCTGTTCATATCTTTTGCCCGCTTTTTGATGGAAGACAGTGTGGCCATTCCTCAAGGATCTAGAGCCAG
AAATGAAATACCATTTGGCCCAGCAGTCCCATCATGGGGTATATACCCAAAGGAATAGAAATCATTCTACTAGGAAAACACATCCAAACCCATGTTTATT
GCAGCACTGTTTACAATAGCAAAGACATGGAACCAACCCAATGCTCATCAGTGAGAGACTGTATAAAGAAAATGTGCCACATATACACCATGGAATACTA
TGCAGCCATAAAAAGGAATGCGATCATATCCTTTGCAGGAACGTGGATGAAGCTGGAAGCCATCATCCTCAGCAAACTAATACAGGAACAGAAAACCAAA
CAGGACATGTTCTCACTCATAAGTCGGAGTTGAACAATGAGAACACTTGGATACGTGGAGGGGAATAACACACACTGGGGCCGGTTGAGGAGTTGGGGGC
GAGGGGAGGGAGAGCATTAGCACAAATAGCTAATGCATGCGGAGCTTAAAACGTAGATGGCAGGTTGATAGGTGCAGCAAACCATGGCACACGTATACCT
ACGTAGCAAAGCTGCACATTCTGCACTTATATCCTGGAACTTAAAGTAAAATTAAAAAAAAAATCTATAGAAAAAAGTTAAGCATTTT

Expression



Full and truncated open reading frames discovered in TCONS_00225248

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.