Detailed information on ENST00000624817

lncRNA-RNA interactions

Number of interactions: 62

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000624817 542 298 UTR3 Trans
ENST00000299157 IKBKB interacting protein protein coding ENST00000624817 587 286 UTR3 Trans
ENST00000309060 zinc fingers and homeoboxes 3 protein coding ENST00000624817 563 299 UTR3 Trans
ENST00000405000 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 retained intron ENST00000624817 600 292 noncoding Trans
ENST00000409458 glycoprotein (transmembrane) nmb protein coding ENST00000624817 503 325 UTR3 Trans
ENST00000421422 zinc fingers and homeoboxes 3 protein coding ENST00000624817 563 299 UTR3 Trans
ENST00000422247 centrosomal protein 135kDa protein coding ENST00000624817 615 281 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000624817 668 288 noncoding Trans
ENST00000477205 calcium/calmodulin-dependent protein kinase II gamma processed transcript ENST00000624817 632 288 noncoding Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000624817 512 292 noncoding Trans
ENST00000547865 spermatogenesis associated, serine-rich 2 protein coding ENST00000624817 588 316 UTR3 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000624817 560 281 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000624817 608 297 UTR3 Trans
TCONS_00004719 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding ENST00000624817 644 306 UTR3 Trans
TCONS_00004721 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding ENST00000624817 644 306 UTR3 Trans
TCONS_00010077 Ras association (RalGDS/AF-6) domain family member 5 novel protein coding ENST00000624817 642 289 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000624817 616 309 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000624817 711 308 UTR3 Trans
TCONS_00030132 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000624817 632 288 CDS_UTR Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000624817 693 282 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000624817 507 309 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000624817 655 282 UTR5 Trans
TCONS_00050195 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000624817 600 290 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000624817 650 279 UTR3 Trans
TCONS_00075834 forkhead box N3 novel protein coding ENST00000624817 600 295 UTR3 Trans
TCONS_00075835 forkhead box N3 novel protein coding ENST00000624817 600 295 UTR3 Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding ENST00000624817 603 290 UTR5 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000624817 525 247 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000624817 622 295 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000624817 622 295 UTR3 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000624817 628 308 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000624817 624 297 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000624817 659 275 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000624817 572 311 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000624817 650 290 UTR3 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding ENST00000624817 645 293 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000624817 635 291 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000624817 635 291 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000624817 635 291 UTR5 Trans
TCONS_00148484 EGF containing fibulin-like extracellular matrix protein 1 novel protein coding ENST00000624817 695 306 UTR3 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} novel protein coding ENST00000624817 541 304 UTR3 Trans
TCONS_00149970 cytochrome P450, family 4, subfamily F, polypeptide 32, pseudogene novel protein coding ENST00000624817 629 295 UTR3 Trans
TCONS_00149979 ankyrin repeat domain 20 family, member A8, pseudogene novel protein coding ENST00000624817 629 295 UTR3 Trans
TCONS_00150599 four and a half LIM domains 2 novel protein coding ENST00000624817 603 258 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000624817 542 298 UTR3 Trans
TCONS_00157701 VAMP (vesicle-associated membrane protein)-associated protein B and C novel protein coding ENST00000624817 534 312 UTR3 Trans
TCONS_00163092 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000624817 506 306 UTR3 Trans
TCONS_00163093 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000624817 506 306 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000624817 662 290 UTR5 Trans
TCONS_00190799 sorting nexin 25 novel protein coding ENST00000624817 668 288 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000624817 628 298 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000624817 673 310 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000624817 673 310 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000624817 519 299 UTR3 Trans
TCONS_00210928 leucine rich repeat containing 1 novel protein coding ENST00000624817 515 309 UTR3 Trans
TCONS_00226753 cell division cycle associated 7-like novel protein coding ENST00000624817 534 307 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000624817 631 297 UTR3 Trans
TCONS_00242952 ankyrin repeat domain 20 family, member A2 novel protein coding ENST00000624817 519 312 UTR3 Trans
TCONS_00242953 ankyrin repeat domain 20 family, member A2 novel protein coding ENST00000624817 519 312 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000624817 633 303 UTR3 Trans
TCONS_00247576 contactin associated protein-like 3 novel protein coding ENST00000624817 601 298 UTR3 Trans
TCONS_00247594 contactin associated protein-like 3 novel protein coding ENST00000624817 601 298 UTR3 Trans

Sequence

>TCONS_00247594 (6009 nt)
AAACATCATGGCCCCTAAATGCAAGCCAAGTATATCTAGGGCTCAACCAAATAAATGGTGCTTTGTTATAATGCTGCAGAAAAAGCCTGCTGTGCCTGCT
GTGTTGAATTTATTGATCTCTAATATGGAATTTCTAAATGGATTTTTCAAGGTAATTTTGACTATTTCATTTTTCACTTTATATGCTAACTTTGGAACCT
ACCCCCCAAATAAGGTATAGCTTCATAATAATATTTTTCTCAAGGTAAACATGACCTATCAAGTGAGTATTGCCAATCTTTTACCATTAATCTTCTTTCT
AATTTCCAGTTTATCACTTCTATATCCTTCTTGTTACTTCAATTTAAAATAACAGGACTACAATAACTGGTTCAGATATATGTGTTTTTAAACTTAAACA
TGGACTACAGAAATCAAAACAGTTGTTTGGGGAGTTATTTTGCCTTTTTTTTTTTTTTTTACATTTCTAACTGTAGTGATCTGGCAATGAACATTCATTG
CAATGGTGTTGATCCTAATATATGATATACTTCAACTCTACCAGACTTTTTCATTCTCCAGCCAACTGTCTCCTGTCAGCCTTTGTTTGAAATTTCTTAA
CTTCTGGGGATTGCTGCCAAACTCTTAATACCATGAACCCCGCATTATCTCTGTAAAATTTAAATCCCTGCCTGTATACTCCAGCTACCCAGCTCATTTC
TGAGCCCTATCAAGTACAATGTTTGTATAAGTTGAGACTAAAACTGTTTTTTTTTTTTTTTTTTTGAGACAGGCTTGCTCTGTCACATAGGCTGGAGTGC
AGTGGCACAGTCATAGCTCGTTGCAGTCTTGACCTCCCAGGCTCAAGTAATCCTCCCTCCCATCTCAGCCTCCCAAGTAGATGGGACTACAGGCATGCAC
CACCATACCTGGCTAGTTTTTTTTCAGTAGAAACGAGGTGCCTGGGCTGTTCTCAAACTCCTGGGCTCAAGTAGTACTTCACCTTGGCCCCCCAAAGTGC
TGGGATTACAGGTGTCAGCCACTACGCCCAGCCTAGAAACTTGTATTATCAGCCTAAAACATAACTAGAAAAGTAAATTTCTATAATCACACAAACTGAT
AAATTTATCTTAAATACTATCAGTTCAAAGATAATAAGTTTTTAATTCTTGTTGTTTCATATTACCAAAATCACTGTATTATTGGTCCATATATTATCCT
TCAAAGCACTCCATCCCTTGCCTTGCCTCACCTAGCCTCACAACAATCTGATAAGCCATCCTCATCTACAACCAAGAGGAGAATTCACCAGATATTCATC
TTCAACAGGCAATTTTTAAAACAGCCTTCCATAATAATAACAGAAATATGCACACTGTAGAAAATTAGAGAATACAGATGAGCAAAAAATCTTAAAACAC
TTCATATTCCCATCGTCCAGAAAGATCAGCACTGTATGTATATCCTACTAGTCTTTTCCCCCATCCCAAATACACATATTTTTATATATGCATTTTCAAC
AAAATATTTCATTCTACATACTTCTGCAATCTGATTTCCAAAGTCAACAATCTTCACCTTTCCATTTCAGTAACTTTTCATCTTGTCTAACTCCTAGATG
AAATTCGGTTATTCAAGATGGACTCCAGCTGGTATGTTCAAATTTATACCAAACCTATAACCATCATCAACCAATTTTTACTTAAAGCTCTGTCTGCCGT
GCCAGGTATGATCTGTCTTCTTCCCTTTGCCAGTGTGTACGGCTCCAGTCCTGCTCAGCATTTCAAAGAGTGCCAGGACTCTTCCTTTTTAAAAAGATAC
AAATACATATTCACCAAGCTTTGAAAAGGCACATATTCTATTCTTATTTTAAATTAATCTTTTAGCTTATTTAATTCTTGTTTATATTTGAATTGAGAAA
GAAGATGGGGTATTAAGGGCAGGAAAGACCCAGTGCACATATAGTTCTATATAGTAGTGGTAGTAGTAGCAGTGGCAACAGTAGCAGCAGTGATACCATC
ATCCTGCACTTGGAAATGTCTCCTTATCCCACACATACAAAACTTAAAGCAAAACAAAATCCTTTAAGTTTGTAAGGAGCCTTTTCCCAATCTGGAAGAA
AACAGAACCTTCAAGTTAGAGGCCATATTGTTCAAACTGATTGAGATATATATGAATTTTGTGACTTAATATGTAAATATTGGCTAAAATATTTAGGATA
GCCCAGATGGTAACAGCAATAGTGCCAATTCTCCAGGCCACTTTTTAATGCATTTCTAGTATTATTATTTTAGTCTTTTATATTCTAAACAAGTACACAT
AAGAAATCCAACAAGAGTCCAATCTAATTTCTTCAACTCTTAGATTCAAACATTTTTTAAAATATACAAATATATATTCACTGAATACTAAAAAGGCACA
AATTCTATTCTTATTTTAAGTTGATGTTTTAGCTTCTTTAATTCTTATTCATATTTGAGTTGAGAAAGAAGATAGGAGTAGTAAAGGCCAGAAAAATGGA
AATCAGGGAAGTATGATAAGAAAGATGGTACAGAGTTGTTTATAGTCTAAAAAGGAGAAGTCTAAGAAGGAGAAGGAGGAGAAAGAGGAAAAGGAAGAGG
AGGAGAAGGAAAAGGAGGGGGGGAGGAGGAGGAGGATGACGATGACGATGACGACGACGATGACGACGACGACGACGACAACTACTAACTTCTTCCAGCT
GAACTATTTTCAGTGGGCTAAAGTCTCTTGATAAAGACACATTCATTAAAAAACTAAACCAGGGCCAGGCACGGTGGCTCATGCCTGTAATCCCAGCACT
TTGGGAGACCGACGTGGGCGGATCATCTGAAGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGC
CAGACCTGGTGGTGCCTGCCTGTAATTCCAGCTACTCAGGAGGCTGAGGCGAAAAATCACTTGAACCCAGGAGGTGGAAGTTGCAGTGAGCTGAGATCGC
ACCACTGTACTCCAGCATGGGCAACAGAGCAAGACTGTCTCAAAAAATAAAACAAAATAAAAAACTAAACCAGGTCAGGCACAGTGGCCTGCATCTGTAA
TCCGAGTACTTTGGGAGACTGAGACAAGATGATTGCTTCAGGCCAGAGGATTCCTTCAAGCCAGACCAGCCTAGGCAACAAAAGCGAGACCCCATCTCTA
CAAAAAAAATTTTTAAATAGAAAAATTAAAAATTAACCACTAGGCTCACAGGAGAGCATAGACATAATCAATTAATTTACTGATTGATGATGCCAGACCT
AAATATTAACTTGTTAGAAAAAGTTCCATGCATTTAATTCACAACTGCTATGTTTCAGACACAGGATTTTTAAATTGACCCTTTTCTTAGATAAAACCCA
AGCTCTCCCTCCCATCTGTTTACTGGTCAAGTTCCCCTACCCTTGGTCCAAATTTAAAGTCTGACTTCAGCACTAATTACACTTAAATATGTACTCCCAA
AGAATACATCTATCAGTAAAGGCTGATGCACTGAAGACTGAAGTCTTCTCTTTAATCCCAGAAATGGTAGAATAGTAATAGCAAATACAATACCACCATT
TTATGTGAGCTTGTCAGAGAAAACTTTGGCATGGTAGGCCTAGGAGAACACGTTTCCAGTAGCAGTGGCAGATGGATGACACGGAAAAACAAGCTCCTGG
TGTCCACAGTGAATAATGCCTAAAGTGGTAACAGGAGACACAGGGCTTACAAGCACTGTTATTTTATAAAGCATAGAATGTCAGTTCACTAAAAGTCCTG
TGGTGGCACATGCAATAAATAAGACCTATTAACACTTTTCTTTACCTAAAATCACCCCCAGAGAGTTAGTTAAGTAACTCACTTCTTAATTCACATTGAT
CATTACGTGTCATTGGTTTGTGATCTTTGATAACAAGGGCTTTCTGGACTTCTATACCTTAAAATTTTTAGGCCCTACTTTTTTTTAGGCCTATCTGTAA
TTATTTCTCATTTTAAAGTATCCAAGTATAGAACTGAGCAGCACATCTATGTCAGACAGATCCAGTTTCAAACCTCAGATCACTATGTAGTAATTCTGTG
ATTCTCGGCAAGTTACTGACCCACTCTTAAGACTCAGTTTCTTCCGCTCTCAAACAGTCATTCTAAAACTCTCACAGTACTGTTAAAATGTAAAGCAGCG
TAGGCTTTGCACACAGGACACACTCAGTAAATGGTAACTGTTGCTATCATTAGCGTTGACAACTTTTCTCCAGTAAGTCTATGCCTCTGTTTAACTCCAT
CTGTGAAACTAGAAACGAATTTCAAAAGTTTCATTTCCAATCATGCTCTTACCAGCAAGATTTAAGATGTCTTTTTTATTATAAGTCTAATTACTCTTGG
GTCAGAAATCAGCAAGAGGCCTATCTAACTTCTATACAATCTCCCAGTCCCCAGAAGGTAATTTAACCTACGGAAGTAGCCAATCTCAAAAGCTAAAGAT
GTTGTGCTTTTGTATCTCCTTACTGGGCTTAATCTGTTAATTAAGCAAACCAGGAGAAGTAAACAAAAGTTTACCTCAACCAACTCTTGCCAGACTTATA
GAGGGAATACAGAACATGATCACCAGTCTTTGCTATTGGCCAATAGTCTATTGTAACCAGCGCTAGAGACCCAACACGACTATCTACAAGGCTGACACAT
GGAAAAACGATTGGTCCAAAACATTTTGTCTTCATCACAGATGATTCCGTTATGAATAAAGCCGTTTTCCTCCTCAGAATATTAATAATACTGATGTCCA
GAAGAAGATGTGGCTTAGAGAATGGGCAGGTGGATTCCATAGTGACAGTTCAACTCATAAAATGAACAATTGCCCTGCACCCTTGTTTAAATATGACGCC
AGGATCTAAAGTCAAAGTTTTGCTAACATTTATTCATGTTACCTTCTGTTTTAGGTCCTCTATACAGATACCACCCTTAGCCTGATGTCTCCATGAAGGC
TCATTTTGCTTTTCCTTCAGCTCCCTTACCCAAGTGCTTCAGGAGAAACATTAAATCGATGCCTTCAACTTCCAACATACCTGGCAGCCCATCAAAGATG
ACTCTTTAACTGTAAATGATAGTATCCTGTCTCGCAAATGCCCATTTTGTCTGCTTCACGTATAACAAGGGTGTGAGAGGCTATAGGAGAGTATTAGACA
GGTTTTACTCGGTTTCTTGCCATCAAAGGTAAACAGTTTTGTATTGTTCAAAGCAGTCATGGGTCTCATTTCCTCATAAAAACAATCTCTACAGCTATTT
ACACCATAGGGCTAAGGAGGTCAGTCAGTGTTGGAAATGCAATTAGGGAAGACAGACTTTTTTTAAGTAAAGAAACATCTGCCCAAAAAGCTTAGGTAAC
AAGCCTCCATCATCATGTGGCTTTGGCTTGGCTTTTGATCTCTTTTCTCAAATGGCAGGCTCCAGAGGCAAATGACACATAGCTACTAACAAAAAGACAT
CCTAAATATTAATTTAAAAATTTTTAACTAGAATATATGTTTTTTGTTTGTTTGTTTGTTTTTTGTGAGACAGAGTCTTGCTCTGTTGCCCAGGTTGGAG
TGCAGTGGCACCATCTCGGCTCATTGCAAGCTCTGCCTCCCTGGTTCACACCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCACC
ACTACGCCCGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACCTTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCCGCCTCGG
CCTCCCAAAGTGCTGGGTTACTGGCGTGAGACACCGCGCCCGGCCTATATGTGTTATTTTTTAAGATATACACACAAAAAGCAAACGGTGTTGTTGGTAG
ATGTGGACCACTGTTCTACACACACTTGTTATCCTCTCCAAGCACCTGCCTATGTGTCAGCCCATCTGATTCCCTCCTCTCCTGCTTCTCACTCATGGCC
TGCATCCCAG

Expression



Full and truncated open reading frames discovered in TCONS_00247594

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.