Detailed information on TCONS_00003798

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00138868 WD repeat containing planar cell polarit... novel protein coding TCONS_00003798 763 311 UTR3 Trans
TCONS_00138868 WD repeat containing planar cell polarit... novel protein coding TCONS_00003798 747 311 UTR3 Trans

Sequence

>TCONS_00003798 (311 nt)
GTTTCCTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTCAGTCATGAAGTCTT<br />TGCCCATGCCTATGTCCTGAATGGTATTGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAAGGTTTAAGTCTTTAATCCATCTTGAATTAAT<br />TTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCAT<br />TGCTTGTTTTT

Expression



Full and truncated open reading frames discovered in TCONS_00003798

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT016690 (Evalue: 9.0E-150)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 1.0E-61)