Detailed information on TCONS_00014508

lncRNA-RNA interactions

Number of interactions: 24

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00014508 590 293 UTR3 Trans
ENST00000450928 antisense antisense TCONS_00014508 537 298 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00014508 552 287 noncoding Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense TCONS_00014508 545 313 noncoding Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay TCONS_00014508 561 300 CDS_UTR Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding TCONS_00014508 580 322 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00014508 535 298 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00014508 562 297 UTR3 Trans
TCONS_00033409 adenosine monophosphate deaminase 3 novel protein coding TCONS_00014508 506 299 UTR3 Trans
TCONS_00033419 adenosine monophosphate deaminase 3 novel protein coding TCONS_00014508 506 299 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding TCONS_00014508 624 298 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00014508 542 300 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00014508 606 278 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00014508 606 278 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00014508 532 296 UTR5 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding TCONS_00014508 608 294 UTR3 Trans
TCONS_00140000 long intergenic non-protein coding RNA 152 novel protein coding TCONS_00014508 583 297 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00014508 590 293 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding TCONS_00014508 506 304 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding TCONS_00014508 602 297 UTR3 Trans
TCONS_00244030 WNK lysine deficient protein kinase 2 novel protein coding TCONS_00014508 655 396 UTR3 Trans
TCONS_00244038 WNK lysine deficient protein kinase 2 novel protein coding TCONS_00014508 655 396 UTR3 Trans
TCONS_00244055 WNK lysine deficient protein kinase 2 novel protein coding TCONS_00014508 655 396 UTR3 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding TCONS_00014508 569 289 UTR3 Trans

Sequence

>TCONS_00251973 (7177 nt)
GGGAGGAGGCGGTGTTTCCGGCCGCCGTCGCTGTCCAGGGAGGCTGAGGCGAGAGTGTACTGGTTCTGCCTGTCTGGAGGGCCATGGAGAAGAGGCTGGG
AGTCAAGCCAAATCCTGCTTCCTGGATTTTATCAGGATATTATTGGCAGACATCTGCGAAGTGGTTGAGAAGCCTGTACCTGTTTTATACTTGCTTTTGC
TTCAGCGTTCTGTGGTTGTCAACAGGTACTATTTTCTTTATAGATTTAAGATTTTTTTTTTTAGAAAAGGGCATTTTATGTGAGTCCCTCAGTTCATTTT
AAGGACTATTAGGAGGCAGAAAAAACAATCTGCTAATTGACAGAAATGGTCATCCTTTTGGTGACTGAGGTCTGTTGGGTTTATTTATTTGTTTTGTTTT
GGAACCAGAGTTTAAATTGGATTCTTTTTCATAAGGGAGAATTGGCACAACCGTTTTAAGACTTGATAAAAGTCAACTGGGTATTTCCACTTAATGACTA
TAAAACCTTGAGCAAATTACCTATTATCTTTGAGGAAGGGTTATTATCTACCTCATGGTTTGATTTGAGGGATAGTATAATTAAAGCATGTAGCACAGCA
CTCAGCATGGGTGCTTAGTCTTGCTATTTGCCCAGGCTGGTCTTGAGCTTCCTTTCCTTTCCTAAAGGAATCTACACTTATGGGAAAAATGCGTTCCTTA
CTTTTTCCATAGAGAGGGGCTATGTTGATAGATTTTTTAGACTATGCTTTCCTCCTAGAGATTATTTCACCAGGGTAAAGCCTCTTGCCAGGAATCAGTG
CCAAGAAGGCTAAATTTCAAAGGAGAATGCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCAAGTTCTTTTGTTGATATTGTGCTTTCATAGTATGA
GTGTGAGAAAACAGCAATATGAGAAAGATTTCTGTGTATGCTGCCATTCTGGCCAGTGACCAAAAACCTTCTGCTGTAGAGACCACCATCTGGGATAACT
AATCAGCCTTTTTCCCTTATAATTACAAAGATTTCTGTTGCTTTCCTAAAGGAATTGGTGGTCATGATTTTGAGACCCTAGTAATTATTGTATTTAGCAA
TTTCAGTAACATCAGCTTTGGGGTTTTTGTTGTCTTGCAGTGATGGTTGATGATTGCATAATTATAGCAGTGGAAGTTGTACTTGACAGAAAGCTGATCT
ACATGGTTTTTTTTTTTTTTTACCCCAGATGATGCTTTGCTGGGACAGCTGACTATTTCAGGTCAACATTTTATATAAGATCATTAGAATTAAATAAGTA
ATTGATTTAGCACCATCAGAATAGGGAAAAATCACTTCTTTAAAAAAAAGAGATGGGGTCTTGTCACCCAGGCTGGAGTGCGATGGTGCCATCATAGCTG
CCTGCAGCCTCAAACTCCTGGGCTCAAGCTGTCCTCTTGCTTCAGCCTCCAGGCATGAGCTAGTATGCCTGGCTAATTTTTTTTTTTTTTAAGACAGTGT
CACTCCATCATCTAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAAACTCTGCCTCCCAGGTTCAAGCGATTGTCCTGCCGCAGCCTCCTGAGTA
GCTGGAATTACAGGCGCACACCACCACACCCGGCTAATTTTTATATTTTATCCTTTTTATATTTTAGTAGAGGTAGAGTTTTGCCATGTTGGCCACACTG
GTCTCAAACTCCTGACCTCAAGTGATCTGCATGCCTCGGCCTCCCAAAGTGCTGAGATTACAGATGTGAGCAACTACACCCGTCTGCCTGGCTAATTTGT
ACATTTTTTTAGGAGATGGGGTCTTGCTGTTTTGCCCAGGTTGGTCTCGAACTCCTGGCTTCAGTCGATCCTCCAACTTTGGCCTACTGAATAGCTGGGA
TTGCAGACACCAACCACCATGCCTGGTGTAAATCACATTTTTTGAAGCACACCTACCACATACCAGACTCCTAATTGTAAACATTACATACCTTATCTCA
TTTAATCTTCATGATAACCCAAAAATAGATAGTTTTCTTCTCATTTTATAGATAAGGAAATTGAGGCCTAGAGAGGCAGAATGACTTGGCCAAGGTCACA
CAGCAAGAACATGGTGGAGGTAGGATTCTAAATCCAGGTTTGTCCACTGTAGAGCTCATACTCTTTCTCTTCTGGTACTCTGCCTTCCAACCATAGGGGA
TGTTTTGGAGGACCAAAGGTTTTTTTTTTGAAACGGAGTCTCACTCTGTCACCAGGCTGGAGTGCAGTGGCGCAGTGCGATCTCTGCTCACTGCAACCTC
CGTCTCCCAGGTTCAAGTGATTCTCCTGCGTCAGCCTCCCGAATAGGTGGGACTACAGGCGCATGCCACCACACCCAGCTAATTTTTGTATCTTTAGTAG
AGACCAGGTTTCTCCATGTTGGCAGGATGGTCTCCATCTCTTGACCTCGTTATCTGCCCATCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCA
CCATGCCTGGTGGCAATTTTTTTTTTTTTTTTACCCAGTACCATGGTAAGCAGCTTCCTATTTGAGGGATTCAAAGTATAGAGGATGAAGAAGCAATTCC
AAGTCTTTCTGTGCTTTCCAATCTAGCACTTGGTTAAACACAGCATTGTAGGCTCATTGTGCAAGTCTTTAGTAACCTTGAGCTTGGTGCTTAAAAACAG
CACCCTAATTAAGTATAGAAGTGCAAAGGTGGTGGTGTTAGGTGTAGTTCTGGTGGGGATTAGGTTATGCCAGTTCTATTTTAGAAAAATTTGGAGCTTT
TATCATGGAAATTAAAAGATCAAGAGCCATGTATGTTCAAATTGAGGGAACATGCAAGCAACATGTGACAGACATATTTGTTATATACTTTGATTTAATT
GGAGCTCCTTCCCATTTTTTTTTTAAAAGGAATATCCTAATAGAAAAAATAAATAGGGCTGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACCTTGGGA
GGCCGAGGCGGGTGGATCACCTGAGGTTAGGAGTTCAAGACCACCCTGACCAACATAGTGAAACGCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGC
GTGATGGCATGCACATGTAATCCCACCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGGGGTTGCAGTGAATCAAGACCGCACCA
CAGCATTCCAGCCTGGCCAACAGAGCGAGACTCCATCTGAAAGGAAAAAAGAACAAATAAATAAAAGGCATAAACAGAGTGCCATAAATAAGAAGTTAAA
ATGAATATATTTAAAATGTTCGTTCTCATTACCAATCAAAACGACAGATTAAAATGAGATATCCTTTTAAATCTATCATATTGATGAAAATTAAAGTAAA
ACTATCCAGTGCTGCCAAGGGGTGATGTGGTTGTCCTCATATAGTGCTGAGGAGTTTGAAAAGAGAACTTCTTGGCATAAATATCAAGAGCCCTAAAAAA
ATTCATATTTTTCGACTTAATTCTTCATTTAAGAATTTATCTGAAGGATACACTTAGATAGTTGTGAATGAGAGCACTGATCAACAGTCATTTATTCTGT
GCTGCAAAATATTGCTGAAACCTGCTTAATTATAGGAGAGTGGTGAAATCTTTGCATCTCCACATGGTGGGATACTATCCAGTCTTAAAATTCATATTTT
AAAAGAAAAGCTGGGTGTGGTGGCACACGTCTCTAGTCCCAGCTACTCGGGGGCTAAGATGGGAGGATTGCTTGAGCCTAGGGGTTTGAGACCAGCCGGC
AACATAGTGAGGCCCTGTCTCTTTAGAATTAAAAAATGTTTAATAATTTAAAAAAAAAGTACACGGGAAAATGCTCCTAATATTAAATGATAAAATCAAG
TTATGCAACTACATATTCAATATGCTGTCAATTTTGTGAAAAGAAGAAAAAATTATGTAATAGAAAACAGTCTGAAACAAGATGTACAACTAAATATTTA
TGTATTTTTTTGACTAGAGGAATTATTATCTCTTCATATTTTTCTGTGTTTTCCAGGCCTTTCTTTGGTATACTTGTATTCCTTTTTATATAAGGGGGAA
AACAACCTACTTGAAAAAGCAACAACAAAATAATAACAGCAAAAACCTATTGGTGGGAGCCTGAGTCAGTATTTCTCTACTCATGAGTTTACTCAGTGTT
TACCTGAGTGTTTACATTTTTTTCCGATAAAATACATTCTTGATTCCTGCTGTTATTTAGCTCATGGATTATTTCTGAAAAACTAACCAAATTAAGGCAG
CTCTGCAGTTATCCTCCACTCCCGCTTACCACTTAGGAGTTTGCTCCATCTTTGGTAGAGCCCCAGGCAGCTGTTGACTTAGACATGGTGAGCTTTTTTA
TTTCCACTTTTGGGTTCAGTACTGAAGCCCTACTGTTAGAAAGCATTGATTACAATTTGATAAAAGATGGTCTGTCTGTGTTTTCCTTGTGTGCCATGGA
ATGGCTATTTTTCTGTTTAATTTTATTGTTAAGTGGCTTGAAAAATAGTGTTTTGGACCTGGGGATTCTCATCTGGAGACAAATAGGAAGTGATCCCAGG
AGTTTTGGAAATTCCTACAATAGATTGTCAGCTTCTTGAGAGCAGACATGTTGCCTCTTTTAGTTATGCTAGATATTCTTAGCGGGTACCAAGGCACATA
GTAGATGCATAAAATATTTGTTGACTGAATAAATTAATAAATTACCAATAAGGGAATTGTTCTTTGAGAATTAAGCTTTAAAAACAACAAAATCAGAGCA
GAGATATGGAAAGGCACTTTAAGGAGACCAATGCTTTTGAGACCAACAAGATTGACTAAAATCTTAACAAATATATTAACACATACAAAGAAAGAATGTA
TACATCTGAAGAGTTATGTGTGCATGTTTGTGGGGGATGCAAGGACCTAATTGGCCCTAGAAATCTGAAACAGGGAGAATCACTGAAGCCAATGTCCTTA
GGCCCAGAGCTAACAGTTGGCTATGAAAACTTGTACTGACATTTCCCTACCTCTGGGAAGGAGATTATACAGTTAGTTAATACGTATTTTGAGTACAGAG
ATAAATTATTCAATTCAGAACCATTTTTTGAGAACTTACTAGGAGTCTGCTTCTAGACTAGGCACCAGGATAATAAAGATTAGTACAATACAATCCTTTC
TCTGGAATAACTACCAGTAGCAAGTGAAAAGGTAGAGGCCAGGTGCATTGGCTTATCCTAGCACTTTGAGAGGCTGAGGCAGGAGGATCACCCGAGGCCA
GGAGTTCAAGACCAGCCTGGACAACATAGTGAAACCTCATCTCTACAAAAATAAAAAAAATTAGCTGGTGGTGGTGGGCACCTGTAGTCCTAGCTACTCG
AAAGGCTGAGATGAGAGGATCACCTGAGCCCGGGAGTTCAAGACTGCAGTGAACTGTGATCATGTCGCTGTACTCCAGTGTGGGTGACAGAGGGAGACCC
TGTCTCTTAAAAAAAAAAAAAAAAGATGCAACGCACAGAGTGCTACTGGAACCGTAGGAGAAGCATTTAGCTTGGAGGCAAAGAGGGTGCTCTAAGGAGT
TCTTTCTAGAGAAGCATCTTCTAGAGAAGCTGATGCCTGAACAGAGTTGTGAAGGTTGAATTTGAAGGATTCAAAGGGTATTCCCATGCAATGGGAATGC
AAGAGCAAAGGCACAAAAGTGAAACAGCCTGGTATATAGAAGAAACTCCACAAGCAGTTTAGCACTACTGGAATATAAAGAGCAAAGCTGGTATGGCAGC
TCCAGAAGAGGTAGGTGGTGGCTAGGTCACAAAGGATCTTGTATGCTATGCTAAGAAGCTTCAATTTTAAACTTTTTAGGTAGATGGTCTATAAATTTTT
TTCATGATGCACTTTAATCCATTGAAAAATTGAGAATGTACCCCTGTATATAAATTTATACATTATAACACGTAATTTTATACTAATGTCTTATATATGT
GTAAGAGATGCCAAAAACAAAATGTTAAAGGGATTGACAGAAGCAAATATGAAGAGTTCTAATATTTTCTTTTCATGCCCGAGGGATTTGTCTTGTGCAC
CTCTTAAGGCAAACACTATAATACTTTAATGCTAGTATTAAATATAAAACTATTAATACTGTATTAAATATACTATAATACTGGTAAATTTCTGAATAAT
TTTTGCAGGAGTATAGAAAAGTGGTAATTGTGGAGATGGAGATGGATGGAAAAGGGAGGGAGGTCAGGGTTAGAGGTTAGGGTATCCATTAGCATGTTAA
TGAAATAGTCCAGGAGAAAGTTGATGAGACTCTGTCTTCAAGGAACCTCTCAGTAATTTCATTCAATACAAACAAGTAGAGGTAGTCCTAAAGAGATGGG
TAGAATTTAGATGTTCTGTAGTAGAGAGATTAGAGGAAGTTTTTTTTTTTTTTCGAGACAGAGTCACACTCTGTTGCCCAGGCTGGACTGCAGTGGTACG
ATCTCAGCTCACTGCAACCTCAGCCTCCAGGGTTCAAGCAATTCTCCTACCCCAGCCTCCCGAGTAGCTGGGACTACAGGGGTGCACCACCACACCTGGC
TAATTTTTGTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGCCAGTCTGGTGTCAAACTCCTGGCCTTGAGCATTCTACCCACCTTGGCCTCCCAGAGT
GCTGGGATTACAGGCGTGAGCCACTGCACCTGGCCAAGAAGTTTTTTAAAATTGAGATATACCACTATCTAATTCCAGAACTTTTTTCTCACCCCTAGAA
GAAGCCCTGTACCCATTAGCAGTCACTCCCTATCCTCTCCTCCCCCAGCTACTAGAAACCACAAATCTGCTTTCTGACTCTATGGATTTGCCTATTCTGG
ACATTTCATAAATGGAATCGTACAATACGTGGCCTTTTGTGTCTGGCTTATTTCATTTAGCATAATATTTCCAAGGTTCATCCATATCCTAGCAGGTATC
AGTACTTCATTTCTTTTTATGGCTGAATAATATTCTGCTTTATGGATATGCCACTTTTGTTTATCCATTCATCAGTTGATGGACATTGGGTTGTTTCTAC
TTTTTGGCTATTATGAACAATGTTGCTCTTAACATTTATGTATACATTTTTGTGTGAACATATGTTTTTAATTTTCTT

Expression



Full and truncated open reading frames discovered in TCONS_00251973

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.