Detailed information on TCONS_00018265

lncRNA-RNA interactions

Number of interactions: 46

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 836 432 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 1250 612 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 737 533 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 805 302 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 1878 673 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 695 401 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 1510 552 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 1229 457 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 1039 603 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 780 682 CDS_UTR Trans
TCONS_00018077 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 836 432 CDS Trans
TCONS_00018077 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1250 612 CDS Trans
TCONS_00018077 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 737 533 CDS Trans
TCONS_00018077 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 805 302 CDS Trans
TCONS_00018077 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1878 673 CDS Trans
TCONS_00018077 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 695 401 CDS Trans
TCONS_00018077 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 3015 1178 CDS_UTR Trans
TCONS_00018077 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1039 603 UTR3 Trans
TCONS_00018077 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 780 682 UTR3 Trans
TCONS_00018078 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 836 432 CDS Trans
TCONS_00018078 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1250 612 CDS Trans
TCONS_00018078 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 737 533 CDS Trans
TCONS_00018078 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 805 302 CDS Trans
TCONS_00018078 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1878 673 CDS Trans
TCONS_00018078 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 695 401 CDS Trans
TCONS_00018078 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1510 552 CDS Trans
TCONS_00018078 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1229 457 CDS Trans
TCONS_00018078 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1039 603 CDS Trans
TCONS_00018078 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 780 682 CDS_UTR Trans
TCONS_00018087 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 836 432 CDS Trans
TCONS_00018087 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1250 612 CDS Trans
TCONS_00018087 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 737 533 CDS Trans
TCONS_00018087 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 805 302 CDS Trans
TCONS_00018087 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1878 673 CDS Trans
TCONS_00018087 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 695 401 CDS Trans
TCONS_00018087 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 3015 1178 CDS_UTR Trans
TCONS_00018087 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1039 603 UTR3 Trans
TCONS_00018087 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 780 682 UTR3 Trans
TCONS_00018088 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 836 432 CDS Trans
TCONS_00018088 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1250 612 CDS Trans
TCONS_00018088 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 737 533 CDS Trans
TCONS_00018088 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 805 302 CDS Trans
TCONS_00018088 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 1878 673 CDS Trans
TCONS_00018088 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 695 401 CDS Trans
TCONS_00018088 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 3015 1178 CDS_UTR Trans
TCONS_00018088 neuroblastoma breakpoint family, member 15 novel protein coding TCONS_00018265 780 682 UTR3 Trans

Sequence

>TCONS_00018088 (2456 nt)
GTGGATCCTTATCACCTTCATAGAAACGTACTCACCTCCCACGTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTCTGTAGGGC
TGGCAGGAGTCAGGCTGTTCAAGACAACTGGAAGGAGTTGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTACTACCTCCAGCAGCTCCC
TGCTGAGCCTGGAAAAGGAGGAAAAAGTAAAGAATAAGCCAGGGGAAATCAGACACAACAGAGCCCCAACTAGGTTTCATGGGTAGCATAAGGAAGTGGT
TAAAAAAGTAAAAGGATAGATCCATTAATGAGGTAACAAATTATTGCCTTCATGTTGGGACAGAACAGGGCCAAATGGAAAAGAATGAAAGAGAAAGACA
GACACACACACACACACACACACACACAAACACACACACAAAGACACACGCACACACTGAGAGAGAAAGAGAGAGAGAGAGAGAGAAAACGAGCTCAGTG
AATTGTCCAGGTGACACACTGATGAGGGAGTAACAGGACACTCTGAGTTAGTGCCCTCAGGACACACAGCATACAGTGATCATGAAAAGACTGTGCTCAA
TAATTTTCCATAAAATGTGCTCAAGTTTCCATGCAGTCACCATGAGAATACAGTTTTTGAAGTCTGGTCCACCTGCAGTAGGTTAGTAAATGATAAGGGG
AGGAAGAAATGGAAACCTAAATATCTACTGCAATGAAAACCAACAGCAATGTTAGTAGGAATAATTCAGGCTTGGTTGAAAAGATGTAATCGATAATGTC
AGCCCGCTCTATTTTCCCTGAACCAGGAGTCTCCAGATGTCAACACAGAAGTAGCTGTTCACAATTGCTCAGTTACCTGGGGCATGGTGGGCCTTGGTCT
TCTTCCTCTTCTTGGTCCTTTTTAATTCCTGCAATACATTCAGGCAGGGACAGACAAAATAAGCCAATTCACCTACACCCATAACAGTCCACTGTCTAAT
CCCCACACAGGGATCTCAGGCTCCTCAGCATGAGAACAGGACAATTTGAGGGATATACTTCAGGAGGCCTGAAAGCTGGTCATGATATTCTTTGGTTTGC
ATCTCAGAACCAAGGGTGAAATATCCCTATTCTGGTAGATCGTTATCCCAAAATCATTTATCCCAAGTTTGTGCAAACAGTTATGCCTTATTGTTCCCAT
CAGTTCAAAGAAAATGCCCCAGAGGATTTCTAGGAGGAAAACTGCAGTATTCGGCCCTGTCTCATCAAATGCCCAGCTCGTTCACGGATGCAAGAATTTT
AGACACTGAAATTAGAATGAAGGAGGAAATCTACAAACCCTTGAGTCCAAATCATAGTTCTGTGAATTTTTTACATCTGCCTGGGTCCAACGTGCTGAGA
GTGGGCTCAGGTTGCCACAGGCATGGCTGGAGACTAGGAATAGAGCCTTGCTCACTGACCCATTTCATGTCTAGGCTTCCAGCTGAGACTACAGTTTCAT
TACAACCTATATGCACCCATAGGTCCTGCCTGTGGCAATGACGTCTCTCGGGTCAGTAAGGGCCACTTGGAACAGGAATATCACCCCTATCTGGAAGGCC
AGGTGGAGGCTTATCACCTTCATAGTAAGGTACTCACTGTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAGCACTTCTGTAGG
GCTGGCCTAAGTCAGGCAGTTCAAGATAACCTGAAGGAGTCGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTTCTCAGCCAGCAGCTC
CCTGCTGAGCCTGGAAAAGTAGGAAAAAGTAAAGAATAAGCCAGGGGGAATCAGAAACCACACAGCCCCAGCTAGATTTCGTGGCTAACATAAGGAACTG
TTTAAAAAGAAAAAGGACAGATCCATTAATGAGGTAATGAATTATTGCCTTTATGTTGGGATAGACCAGGGCCAGGTAGAAAAGAATGAAAGAGAAGACA
GGGAGAGGGAGAGAGAGAGAGAGGAGAAAGTGAGCTCAGCGAATTGGCCGGGTGACACACTGATGAAGGGGTCAAAGGACACTCTGATTTAGTGCCCTCG
GGACACACAGTGAACAGTGATCATGAAAACAGTGGGCTCAATAATTTTCCATAAACTTGCTCAAGATTCCATGCAGTTGCCATACGGCCTTTGAGGTATG
GTCAACCTATAGTAAGTTAGTAAATGACAAGGGGAGGAAGAAATGGAAACCTAAACATCTACTGCAATGAAAACCAACAGCAATGGCAGTAGGAGTAATT
CAACCTTCGTTGAAAACATGAAATTGAACACACTCTTCTTTTCCCTGGACCTGGCATCTCCAGGTGTCAACACAGAATTAAGCATCCATAATTGCTCAAA
GTTACCTGGGGCATGATGGGTCTTGGTCTTCTTCCACTTCTTGGTACTTTTCAATTT

Expression



Full and truncated open reading frames discovered in TCONS_00018088

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.