Detailed information on TCONS_00019079

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00019079 560 256 UTR3 Trans
ENST00000511184 E74-like factor 2 (ets domain transcript... nonsense mediated decay TCONS_00019079 540 275 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay TCONS_00019079 534 271 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00019079 560 256 UTR3 Trans
TCONS_00184374 neutral cholesterol ester hydrolase 1 novel protein coding TCONS_00019079 779 387 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosylt... novel protein coding TCONS_00019079 684 408 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00019079 629 378 UTR5 Trans

Sequence

>TCONS_00019079 (3150 nt)
ACGCCTGTGGATTGGCTGATGGAGCTGTGAGCCGGCTGTAGTTGAGCGGGAACCCGAGACCTGGCAGTCGCCATGACTGGCTGTCCGGCGTCATCAAGAC<br />GCCGAGGCTTCGGGCTCTTTTTCTTCTTGCGTCTACACCGCCTCCTGTTGTTGTTTCTGGTTTTGCGTGGGACCCTGGCCAACAAACTTAACGTGCCACA<br />GGTGTTGCTACCCTTCGGCCGAGAGCCAGGCCGGGTGCCTTTCCTGCTGGAGGCCCAGCGGGGCTGCTACACTTGGTGAGGGGTGGTGGGTGACAAGGAT<br />ATGCACCCTCACTACCATCCAGTAAGGGTGAGGGGGGTTCCCTCTGTAAGATCCCACAGGAATACCGTGTGGGGCCGCGTGAAGGGGCCTAGCCGGTAGG<br />GGAGGAGAGTGTGGTGTCAGTGAAGGTGGCGAGGAGCAGACCCTTGGGTGTGGCGTGTCCTACTCATGTGGTATATCCTCCAGCTGTGTGACAATCTTCC<br />AGACGTGTGAGGAATTCTCGGGATGTGGGACTGGCCTCTTCTCTGTGTGTGTTGGGAAGGGGTGGTCACTATGAGCAGCCGTCAGGGTAAAGGGAAGCCC<br />TGTGTTGGAGGCCACAGGTACTGATGACTTCCAATGTAAACAACTAGAGTAAGAGGAAGTTCCCCATATCTGAGGAAATTTCTGTAGGAACAGGAAAACT<br />TGGGGTGCGAGGGTCCCCACTAACTATAGATGAGCTATTCAATGTGAGAAGGACTTAAAACACAACAGCCAAGTATTGGGGGTTAACTAAGCACTTTACA<br />TGTGTTAACTCATTCGCTTTTTGCAGTCTTATGAAGTAAGTACTATTACTCCCATTTCACAGACGAGGAAAGTGAGGCCCAGAGACTATGAAGTGTAAAC<br />TTCTGGGAATATGAGAAGATTTATCGTGGGTGGAGATGAGATCTGTCTGTATTATCAAAATTGCCCCATTTATAAAAGGGTACCCGCTTGAAGTGTGAGG<br />ACAGGGGGTACACACAACTCCGGGATAATGACTTCCTGACTGAAGATGAAGAGACATGATTTTCTGGTGTGAGAGGACCCAATGATGGGTTATGTGGTTG<br />CCTAAGGTATGAGAGAACCTAACCGAAGTGAGCTTCAGGATGCCAGTGCATTCATCCTAGATGGAGTAGATACCCCTTTGCCATCTCCTAGGAGAAGCAA<br />TGAGGTTTGTTCCGAGTATAAATTCACCTCTCATTTTATGAGGAAGTATAAGGAAAGTGAGCTTGTAAGATGATCCAGTGTGACGTGTGTGTTTCCTGAC<br />CGTGAGGGTGATGCAAGGCATCTTTCCAGCATTGAAAGCCATTTCTTCTATCACTCCAAAAATATTAATGAGGCCAGGCATGGTGGCTCACGCCTGTAAT<br />CCCAGCACTTTGGGAGGCCAAGGCAGGAGGATTACTTGAGGCCAGGAGTTTGAGACCAGCCGGATCAACATAGTGAGACCCCGTCTCTATTTAAAATAAA<br />AACATTCGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGGGCAGGCAGATCACTTGAAGTCAGGAGTTCAAGACCAGCCTGG<br />CCAACATGATGAAAGCCCATCCCTACTAAAAATACAAAAATTAGTCGGGCATAGTGGCAGACACCTGTAATCTCAGCTACTCGAGAGGCTGAGGCAGGAG<br />AATCGCTTGAACCCTGGAGGCGAATGTTGCAGTGAGCTGAGATCGCCCTGCTGCACTTCAGCTTGGGCAACAAAGTGACTCGGTCTCAAAAACATAATAA<br />TAAATAAGAATAAAAATATTTATGAATGTTTTTGGTATTTTGAGTTGGACTCACACCTCATAATTTAGGCACCTTTTCCATCCTAGATATCAGAAGCCTG<br />GTTTCTAGGATTGAAGGAAACTTTCCTCAGAGTATGAGAAAGTCCCCTCTCATTACTAGAAACACATCAGTCGTATTTCTGCATACTGAGGGAAGAATAT<br />AAAAATCTTTTAAAAAAAATTGAGGGAGGGATATTTCTGGGACTTTGTTCAAGGGATCATTGGGAAAGTTCTCATCAATCTCTCAGTTTAATTATCGCAT<br />CCCTAAGCAATGTTCCTTCTTTAAAAAGTGTCATTTACATATACCTGGTAGTATGTAACATGGAAGAAGTGTGAGAATCTATGTTCCACTAAAAGTTAAT<br />TTTAACCCACCTATTTCACACTCTTAAGAATTTTGTTCTGGCAGGCATTCCACCCATCATGATGCAGTTACTGTTGAGCCTTTATATGAAAATGGCACCT<br />TGTGTTCCCAAAAAGCTGTACTCATTGCTGAATCTACGCAACCGATACGCCTCAGCAGTATTATTCTTGCTCGAGAAATAGTGACTGACCATGAGCTACG<br />CTGTGATGTTAAGGTTGATGTGATAAACAGCATTGAAATTGTATCTCGGGCCCGGGAACTTTATGTAGATGATTCGCCACTGGAACTGATGGTGAGGGCA<br />TTGGATGCTGAAGGAAATACTTTTAGTAGTTTGGCAGGGATGATGTTTGAGTGGAGCATTGCCCAGGACAACGAGTCAGCAAGAGAAGAACTGTCTAGCA<br />AAATTAGGATTCTTAAATACTCCGAAGCAGAATATGCTCCCCCAATATATATAGCTGAGATGGAAAAAGAGGAGAAACAAGGAGATGTGATTTTAGTGTC<br />TGGGATTAGAACTGGTGCTGCTGTTGTAAAAGTTCGAATTCATGAACCATTCTATAAGAGGTGAAATTTCCCCTGGAACATTATATACTGGAATTGCAAG<br />ACCATAGAGTTGCACTTAACGGGTCTCATTCTGAGAAAGTGGCTATACTGGATGACAAAACAGCCATGGTGACTGCCTCACAACTGGGCCAGACTAATCT<br />TGTCTTTGTCCATAAAAGTATCCTTTTGTTCAAGTTTTAGCTGCCAGTCTACACTTCCTTGAGCATCCTAGACATGTTCTTTGGTAAAATAATTTATTAA<br />GAATGATTATGGCCGGGCGCGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGCTGATCACAAGGTCAGGAGATCGAGACCATCCTG<br />GCTAACACGGTGAAACCCTGACTCTACTAAAAATACTAAAAATTAGCCAG

Expression



Full and truncated open reading frames discovered in TCONS_00019079

In silico ORF/peptide predictions
>peptide 1 (91 aa)
MVRALDAEGNTFSSLAGMMFEWSIAQDNESAREELSSKIRILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKR

>peptide 2 (68 aa)
MTGCPASSRRRGFGLFFFLRLHRLLLLFLVLRGTLANKLNVPQVLLPFGREPGRVPFLLEAQRGCYTW

>peptide 3 (54 aa)
MREPNRSELQDASAFILDGVDTPLPSPRRSNEVCSEYKFTSHFMRKYKESELVR


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT017262 (Evalue: 6.0E-70)

Best hit to Swiss-Prot:
sp|Q5VU65|P210L_HUMAN (Evalue: 5.0E-94)