Detailed information on TCONS_00019079

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00019079 560 256 UTR3 Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay TCONS_00019079 540 275 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay TCONS_00019079 534 271 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00019079 560 256 UTR3 Trans
TCONS_00184374 neutral cholesterol ester hydrolase 1 novel protein coding TCONS_00019079 779 387 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding TCONS_00019079 684 408 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00019079 629 378 UTR5 Trans

Sequence

>TCONS_00252827 (3149 nt)
ACGCCTGTGGATTGGCTGATGGAGCTGTGAGCCGGCTGTAGTTGAGCGGGAACCCGAGACCTGGCAGTCGCCATGACTGGCTGTCCGGCGTCATCAAGAC
GCCGAGGCTTCGGGCTCTTTTTCTTCTTGCGTCTACACCGCCTCCTGTTGTTGTTTCTGGTTTTGCGTGGGACCCTGGCCAACAAACTTAACGTGCCACA
GGTGTTGCTACCCTTCGGCCGAGAGCCAGGCCGGGTGCCTTTCCTGCTGGAGGCCCAGCGGGGCTGCTACACTTGGTGAGGGGTGGTGGGTGACAAGGAT
ATGCACCCTCACTACCATCCAGTAAGGGTGAGGGGGGTTCCCTCTGTAAGATCCCACAGGAATACCGTGTGGGGCCGCGTGAAGGGGCCTAGCCGGTAGG
GGAGGAGAGTGTGGTGTCAGTGAAGGTGGCGAGGAGCAGACCCTTGGGTGTGGCGTGTCCTACTCATGTGGTATATCCTCCAGCTGTGTGACAATCTTCC
AGACGTGTGAGGAATTCTCGGGATGTGGGACTGGCCTCTTCTCTGTGTGTGTTGGGAAGGGGTGGTCACTATGAGCAGCCGTCAGGGTAAAGGGAAGCCC
TGTGTTGGAGGCCACAGGTACTGATGACTTCCAATGTAAACAACTAGAGTAAGAGGAAGTTCCCCATATCTGAGGAAATTTCTGTAGGAACAGGAAAACT
TGGGGTGCGAGGGTCCCCACTAACTATAGATGAGCTATTCAATGTGAGAAGGACTTAAAACACAACAGCCAAGTATTGGGGGTTAACTAAGCACTTTACA
TGTGTTAACTCATTCGCTTTTTGCAGTCTTATGAAGTAAGTACTATTACTCCCATTTCACAGACGAGGAAAGTGAGGCCCAGAGACTATGAAGTGTAAAC
TTCTGGGAATATGAGAAGATTTATCGTGGGTGGAGATGAGATCTGTCTGTATTATCAAAATTGCCCCATTTATAAAAGGGTACCCGCTTGAAGTGTGAGG
ACAGGGGGTACACACAACTCCGGGATAATGACTTCCTGACTGAAGATGAAGAGACATGATTTTCTGGTGTGAGAGGACCCAATGATGGGTTATGTGGTTG
CCTAAGGTATGAGAGAACCTAACCGAAGTGAGCTTCAGGATGCCAGTGCATTCATCCTAGATGGAGTAGATACCCCTTTGCCATCTCCTAGGAGAAGCAA
TGAGGTTTGTTCCGAGTATAAATTCACCTCTCATTTTATGAGGAAGTATAAGGAAAGTGAGCTTGTAAGATGATCCAGTGTGACGTGTGTGTTTCCTGAC
CGTGAGGGTGATGCAAGGCATCTTTCCAGCATTGAAAGCCATTTCTTCTATCACTCCAAAAATATTAATGAGGCCAGGCATGGTGGCTCACGCCTGTAAT
CCCAGCACTTTGGGAGGCCAAGGCAGGAGGATTACTTGAGGCCAGGAGTTTGAGACCAGCCGGATCAACATAGTGAGACCCCGTCTCTATTTAAAATAAA
AACATTCGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGGGCAGGCAGATCACTTGAAGTCAGGAGTTCAAGACCAGCCTGG
CCAACATGATGAAAGCCCATCCCTACTAAAAATACAAAAATTAGTCGGGCATAGTGGCAGACACCTGTAATCTCAGCTACTCGAGAGGCTGAGGCAGGAG
AATCGCTTGAACCCTGGAGGCGAATGTTGCAGTGAGCTGAGATCGCCCTGCTGCACTTCAGCTTGGGCAACAAAGTGACTCGGTCTCAAAAACATAATAA
TAAATAAGAATAAAAATATTTATGAATGTTTTTGGTATTTTGAGTTGGACTCACACCTCATAATTTAGGCACCTTTTCCATCCTAGATATCAGAAGCCTG
GTTTCTAGGATTGAAGGAAACTTTCCTCAGAGTATGAGAAAGTCCCCTCTCATTACTAGAAACACATCAGTCGTATTTCTGCATACTGAGGGAAGAATAT
AAAAATCTTTTAAAAAAAATTGAGGGAGGGATATTTCTGGGACTTTGTTCAAGGGATCATTGGGAAAGTTCTCATCAATCTCTCAGTTTAATTATCGCAT
CCCTAAGCAATGTTCCTTCTTTAAAAAGTGTCATTTACATATACCTGGTAGTATGTAACATGGAAGAAGTGTGAGAATCTATGTTCCACTAAAAGTTAAT
TTTAACCCACCTATTTCACACTCTTAAGAATTTTGTTCTGGCAGGCATTCCACCCATCATGATGCAGTTACTGTTGAGCCTTTATATGAAAATGGCACCT
TGTGTTCCCAAAAAGCTGTACTCATTGCTGAATCTACGCAACCGATACGCCTCAGCAGTATTATTCTTGCTCGAGAAATAGTGACTGACCATGAGCTACG
CTGTGATGTTAAGGTTGATGTGATAAACAGCATTGAAATTGTATCTCGGGCCCGGGAACTTTATGTAGATGATTCGCCACTGGAACTGATGGTGAGGGCA
TTGGATGCTGAAGGAAATACTTTTAGTAGTTTGGCAGGGATGATGTTTGAGTGGAGCATTGCCCAGGACAACGAGTCAGCAAGAGAAGAACTGTCTAGCA
AAATTAGGATTCTTAAATACTCCGAAGCAGAATATGCTCCCCCAATATATATAGCTGAGATGGAAAAAGAGGAGAAACAAGGAGATGTGATTTTAGTGTC
TGGGATTAGAACTGGTGCTGCTGTTGTAAAAGTTCGAATTCATGAACCATTCTATAAGAGGTGAAATTTCCCCTGGAACATTATATACTGGAATTGCAAG
ACCATAGAGTTGCACTTAACGGGTCTCATTCTGAGAAAGTGGCTATACTGGATGACAAAACAGCCATGGTGACTGCCTCACAACTGGGCCAGACTAATCT
TGTCTTTGTCCATAAAAGTATCCTTTTGTTCAAGTTTTAGCTGCCAGTCTACACTTCCTTGAGCATCCTAGACATGTTCTTTGGTAAAATAATTTATTAA
GAATGATTATGGCCGGGCGCGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGCTGATCACAAGGTCAGGAGATCGAGACCATCCTG
GCTAACACGGTGAAACCCTGACTCTACTAAAAATACTAAAAATTAGCCAG

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.