Detailed information on TCONS_00025076

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00138868 WD repeat containing planar cell polarity effector novel protein coding TCONS_00025076 706 289 UTR3 Trans
TCONS_00138868 WD repeat containing planar cell polarity effector novel protein coding TCONS_00025076 2665 1262 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding TCONS_00025076 2271 1065 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding TCONS_00025076 2271 1065 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding TCONS_00025076 595 324 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding TCONS_00025076 2733 1250 CDS_UTR Trans

Sequence

>TCONS_00193640 (6013 nt)
ACATAGGTCCCCAGAGAATTTCAATATGTCTGATGTCAAGAACGGAAAGTGAGACAGCCAGGTGGGAGGGGGTCCCTGGAGAATCTCCAACCAGCCTGCG
CACTGGGAATGCGCACTGGAGTGAAAATACAGAAGTTGGTGCCCTTTGCAGCAGCCAGGAGTCCGACTCCTCCTCTTCCTGTGTGGAACCTGGAATTCAA
ACGGCTGGGTAGGAAGCACGCTAGCAGGGGCCTCTGGCCTTGCTGAGGGTCCCTGTTTCCCCTTTTCCTTCCTTTTCACCCAACAAAACCCTGCTTTACT
CACCCTTCAAACCATCTATGAGCCTAAATTGTCGTGGTCGTGGAATGGACAAGGACCCAGTCTTTAGCTGAACTAAGGGAAAGTCCTGCTTTTTGGCGCG
CAACAGGGGAGCTCAAGAAACAGTGAGTGAAATGGGGACTCAAAACCTCTCACTGTTGATCCTAAGCATTTTCATCCTCAGACTACTGAGGGTGGGGGAA
ACACGACCCCAAACTCCGTTGCTCCGTTGGGGGTCGTCGGGGGAAAGGCCTTTTCCTTCCTTTTTCAGGACAGACAGGAAAGCCGGGGCTCCTCACTCCC
CCTCCCCTCTGTGCCCGGGACGGGATGCATGGCCCAAGGGTCCCACACAGCTGGCTAGATGGTTCTCAGACACAAGCCACCGCAGCCTTCCTTTTCCCCT
GCCAGGGGGTTAAACTTTATCAGAGAGTAATTAAGCTTTAACCCTGCTGTTGAAATCACTTGCAGACGAATAAGAAGTTCTTCCCCAGGCATTTTTAAAC
CTTTTTTCACTCCCCTTTTCCACCTCCTCAACAAGTAAACCCTTAAAGTTTTTTTTTTGTTTGTTTGTTTGTTTTTTTTTAGAAGACACTTTACTAGGCC
ACTCCCTCTGCTCCCCAGCTATCACTGTATGCTCTGCAAAGTTTTGCTTGTGAAATAAATCCTCTATTTTGTTTTACATCCTGAGGCCATGGCTTATAAC
TCTGGCGGCAAGGATTTGTTTAGCAATCCTGCCTTAGGGGATGAGCCCTCTCTAATTCAATATCTGCATGTCCCCTGTCTCTTAAAGGGCCTCACTCACG
GCATATGGAACTAACCACGCCCCTAACTAAGAAGGCACACCTTAGTTGCAGTTAGCACACAATTAAAGCAACTCTCCAAGTTTTACCTTAAAGTTCAAAA
TTGCTAGGAGTTGAAACTACTAGAAATATATTTACATGCAAGAGTCAAAGAAACTTTGAACTATTTATGGCCTTTAATAATTAAGTAAGGTATACTCCTG
TGATCAAGACTTGGAGCATATTTGTTTCTCTCTGCCTGGTTCCTCTAGAAATTGGAAACTATCAGAACAGAGACCAACTCCGTTTCCCGATCCCTTTGCA
ATCTGCATTGAACCATGAGTCAAGTTCTTGATAAAGGAGTGAAAATGGTAAGTCTAAAGCAATGAAAAGCTGCTGTATTGACTACACATGCCTTCATTTC
TTCTACCCTGCTTCTTTCATGCCTGCTTATCTGAATGACACCAGGATGACATTTAAGGCACATCTGAAGATGGGGAAACCACAGCACAGAATAAGGCTGG
GCCCTTGAATCAATAAATGAAGGAGAACTACTCAAGAGAACAAAACCACCAGCAATATCCACCTGTATTTGTCTTTTCATAATGTGTGACACATGTGCTC
ATGGATTATTGTCCGAAGCAAGACATGTGACCAAGCCTAACATCAACTGGGTGAAGAGCTATATGTTCCTTTCTCAAGAGGCACTACAAGTGACATGCCA
CTGGGCAGGTAAGATCCTCTCAAATGAAGGGACTGTGAATATTTGACTAATAATACAAATATTTACTGGATATTTTACAGTGATATTTACAAATATCACT
GGCTAACTTTTCCCAGCTTGATATCCTGAAAGAGGCACAGTTTCAGTAGTAAATGGTAAATTTACCTTGATTGCACTGAAGGCTATTTCTTTAAAACTAT
TTTCTTTCCTTTTGACTATTCCATGTATCCTTTCAGAAGTAAACATTGTTTTTACCCCTTTAAAAAGTCTACTTATACCATCTACTTAATTTGGAATTTA
TCTAACATTGCCAGTTTGATATAGATACAGAAATTTAATGAGAAAATGCAGTTCTATATTTAGAATATGGATTCTTCAAGATGTTTCTGACACACATTTG
TTTTCATTGAAACATTAAACAATTATTTAGCTAACATCTGAGGAGCACATTGAATTTTGTACAGTTCAACTTTTTTAAAATGAAAGAAATAGTGTTTCTT
GTAGAAGGGAGGAATGGAGATTAGCACCAAAGGAAAATTTGACTCATTCTTTGTCTCATTTGGTCTTGAAGGTTAGAGTCTGAATAAGAGAAACTATGTC
CAGGAAGTGTATCTTATGAATAAGCAACTAATACATCACATTTTCATGGAAATTATTTTTAAATAATCAGAGTTAGTAAATTCAGTTTTTGTCTGTTTTT
TTTTTTTTTTTTTAACCCTAAGGCAAGCTCACAGGCCATACTTAAAGTTGTAAATATAAGCCTTAAAGAGTAAATTTCTAGGCAGAGCATGGCAAGGTAG
ATGAATGGATTCCATTAATGTCTGTGGAACCAACGGAGTTAAATCCTTTTTTCATTTGTCTCAAAAACGAAGCCCTAAGCAAGCTTTGCAAATGGCAAGA
GTAATAACAGTTGAGTCATGAACCTAAGGCTCTTAGTGTTAATGCTCTAATTCATTAAACCAACTGTTTTCCTGATGGAAGTCATTTTCTAAATGGTTTC
TAAGCCAAAATGCCTGGCATAATTAAAATTTAAATTTTGGTTATTTTCTTCACTCTCCCCCATTTTTTAAATTCTTTTATTTATTTATTTATTTTTTATT
ATTATTATACTTTACGTTTTAGGGTACATATGCACAATGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGTCCTGCACCCATTAACTCATC
ATTTAGCATTGGGTATATCTCCTAATGCTATCCCTCCCCACTCCCCCAACCCCACAACAGTCCCCAGAGTGTGATGTTTCCCCCCAGTGTCCATGTGATC
TCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGATTTTCAATTTCATCCATGT
CCCTACAAAGGACATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAGTCTAGTCTATCATTGTTGGACAT
TTGGGTTGGTCCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACATGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATA
TACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCACCACACTGACTTCCACAATGGTTGGAACTAGTTTACAGT
CCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATCGCCATTCTAACTGGTGTGAGATG
GTATCTCATTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTATTTTGGCTGCATAAATGCCTTCTTTTGAGAAG
TGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTGGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCGTTGTAGATTCTGAATATTAGCCCTTTGT
CAGATGAGTAGGTTGCGAAAATTTTCTCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTTTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAG
ATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTAATGCCTAGGTTT
TCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTCTTTAATCCATCTTGGATTAATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTACAGCT
TTCTACATATGGCTAGCCAGTTTTCCCAACACCATTTATTAAATACTTTGTATCAAATACAACTCTTCAAAATGTATGACAATTTTCTTATTTGATAATT
TTAATTTCATGATTTACAAAATTAAGCTCACTAAATATGAAGAAAATTCACAACTGAATGTATTCTAAATCCTAGGGAAACATTCCCTAAATTGAGTCAT
TTAATAGTTCTGGAACAGGGATCAGCAAATTTTGGCCTGCAACCAATTTTTTAAAATAACGTTTGTTTACATATTACTATAGCTGCTATTTTTGTGCTAC
CATGGCAGAGTTGAAGGAAAGGAAAAGAAAGGAAAGCAAATGCTTCCTTCTCCATAGTACTCAGATGCCTGCCAAGGTGCTGGAGCTATGTGACATAGAA
AGAATTTAGTAGTTGTTTTTTTTTTTTCTCCTCAGATTCCTACTATCCTATAAAATTGGAACTTTAGTCTTTTTAATGGAAAGATGATTTCATTCTTCCA
TTCATTTTGATAGGTTTGTCCCAATAACAGGAATATGATTTAAGTCAGCTATAACTGTGTCCACAGTTTTCTTTGTTAATATCACAAATCTCTTGTTTTA
GAACATAGGATGAGACAAGACAAGATCTTTTATATGGCTGGTTTGGAAAGTGTCTGCTATGGAGACCCAAATTTTCCCACATTTAAGTACAGAGGTGAAT
TTGGTGGGGCAGGGGTGGAGTCGGGGGTGGATAGTATCAAACCTAACTTTGACCTTCAGTTCAAACCAAGTTCTTCAATAGACTTCTTCTAGTAATATAC
ACAGAAACTGGTATTTGGATTCCTATTTTTTTTTTTCTAAATCACCCAATTGACTGAGAATTTGGAGATAGGGGAACAGAATTAATATTATGCCCTAACT
CCAGCCCCAACCCTCTAACTTTAGCACTCCTGGGGCTGACCAGGAATTTCCCCTGGCCAGGAAAGAAACACATTTACCACCAAATCCAATACGTCAAGTG
GACAAAAATTTGTAAATTGAGAGGAGAAGTACTTCTCTCGCTTTAGCACACACTGTTTAGCCCATAAAGTAGAATCATTTTCTTTGTGGAAGCATAGAGA
GAACATCTCCCTTCTCTTCACATCTAGCCCAAAGCTTGGTCCCTTCAGACCCTCTTGGCCTTGAGGGCACACTGTGATTGACAAGTGGGAAGAAAGTCAG
AATTCCTTTTGTGGCTGCAATAGAAAGATATTCTTCTGAAAAATGAATTCCACTATTTATATGTGAATATAGAGAAATTCAGGGCTAGCTTCATGGATAC
ATGACCTGTGCACTTGTACAGAGTCCCATGCTTAGAAGAGTACAATGTTTGGTTTAATATTCTGCTATCCCTGTCTCAAAATAGGCCCAATAAATTAGGT
AGCTATCCTGGGTAGGGTATTAGAGTCACATTCTCTTGTTAAGTTCAACCAGAAATAATGTCATATTTTGATGTTTATGTTTTCCCATGTATACTTCTTA
ATTGCTGCATTTCTCAGTTGGGAAAAAAAATTGGTGTAATATTGCCCACAAAGAATCTTCATTTAAAGTTGGTCAAATTATCATTTATGTTTTCCCCACA
CAGGATGGGTTACACCCAGAAATCTCACATTTAGTACTTTGCTTAAGCAGATTATTAAATGTCTGTCCATGAATAACTTCTCATAGACTTGCACAACCAC
AACACATCTTTAGAAGTAAAACCCCAATTTATGTGTGAATAATGATTTGATCACAAATCCAAGTGTAACAATATTTGGACTGAGAATATTGGTGGCACAT
AATAGTTACTAAATACATCAATTTATTTACATTAAATAAATTAGTTTCACAAAAGACACGATCTAAAATTCTATTTTCATGTAGGAGGCAGTTTGTAAAA
AAATATATTATTTG

Expression



Full and truncated open reading frames discovered in TCONS_00193640

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.