Detailed information on TCONS_00025076

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00138868 WD repeat containing planar cell polarit... novel protein coding TCONS_00025076 706 289 UTR3 Trans
TCONS_00138868 WD repeat containing planar cell polarit... novel protein coding TCONS_00025076 2665 1262 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarit... novel protein coding TCONS_00025076 2271 1065 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarit... novel protein coding TCONS_00025076 2271 1065 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding TCONS_00025076 595 324 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding TCONS_00025076 2733 1250 CDS_UTR Trans

Sequence

>TCONS_00025076 (6014 nt)
ACATAGGTCCCCAGAGAATTTCAATATGTCTGATGTCAAGAACGGAAAGTGAGACAGCCAGGTGGGAGGGGGTCCCTGGAGAATCTCCAACCAGCCTGCG<br />CACTGGGAATGCGCACTGGAGTGAAAATACAGAAGTTGGTGCCCTTTGCAGCAGCCAGGAGTCCGACTCCTCCTCTTCCTGTGTGGAACCTGGAATTCAA<br />ACGGCTGGGTAGGAAGCACGCTAGCAGGGGCCTCTGGCCTTGCTGAGGGTCCCTGTTTCCCCTTTTCCTTCCTTTTCACCCAACAAAACCCTGCTTTACT<br />CACCCTTCAAACCATCTATGAGCCTAAATTGTCGTGGTCGTGGAATGGACAAGGACCCAGTCTTTAGCTGAACTAAGGGAAAGTCCTGCTTTTTGGCGCG<br />CAACAGGGGAGCTCAAGAAACAGTGAGTGAAATGGGGACTCAAAACCTCTCACTGTTGATCCTAAGCATTTTCATCCTCAGACTACTGAGGGTGGGGGAA<br />ACACGACCCCAAACTCCGTTGCTCCGTTGGGGGTCGTCGGGGGAAAGGCCTTTTCCTTCCTTTTTCAGGACAGACAGGAAAGCCGGGGCTCCTCACTCCC<br />CCTCCCCTCTGTGCCCGGGACGGGATGCATGGCCCAAGGGTCCCACACAGCTGGCTAGATGGTTCTCAGACACAAGCCACCGCAGCCTTCCTTTTCCCCT<br />GCCAGGGGGTTAAACTTTATCAGAGAGTAATTAAGCTTTAACCCTGCTGTTGAAATCACTTGCAGACGAATAAGAAGTTCTTCCCCAGGCATTTTTAAAC<br />CTTTTTTCACTCCCCTTTTCCACCTCCTCAACAAGTAAACCCTTAAAGTTTTTTTTTTGTTTGTTTGTTTGTTTTTTTTTAGAAGACACTTTACTAGGCC<br />ACTCCCTCTGCTCCCCAGCTATCACTGTATGCTCTGCAAAGTTTTGCTTGTGAAATAAATCCTCTATTTTGTTTTACATCCTGAGGCCATGGCTTATAAC<br />TCTGGCGGCAAGGATTTGTTTAGCAATCCTGCCTTAGGGGATGAGCCCTCTCTAATTCAATATCTGCATGTCCCCTGTCTCTTAAAGGGCCTCACTCACG<br />GCATATGGAACTAACCACGCCCCTAACTAAGAAGGCACACCTTAGTTGCAGTTAGCACACAATTAAAGCAACTCTCCAAGTTTTACCTTAAAGTTCAAAA<br />TTGCTAGGAGTTGAAACTACTAGAAATATATTTACATGCAAGAGTCAAAGAAACTTTGAACTATTTATGGCCTTTAATAATTAAGTAAGGTATACTCCTG<br />TGATCAAGACTTGGAGCATATTTGTTTCTCTCTGCCTGGTTCCTCTAGAAATTGGAAACTATCAGAACAGAGACCAACTCCGTTTCCCGATCCCTTTGCA<br />ATCTGCATTGAACCATGAGTCAAGTTCTTGATAAAGGAGTGAAAATGGTAAGTCTAAAGCAATGAAAAGCTGCTGTATTGACTACACATGCCTTCATTTC<br />TTCTACCCTGCTTCTTTCATGCCTGCTTATCTGAATGACACCAGGATGACATTTAAGGCACATCTGAAGATGGGGAAACCACAGCACAGAATAAGGCTGG<br />GCCCTTGAATCAATAAATGAAGGAGAACTACTCAAGAGAACAAAACCACCAGCAATATCCACCTGTATTTGTCTTTTCATAATGTGTGACACATGTGCTC<br />ATGGATTATTGTCCGAAGCAAGACATGTGACCAAGCCTAACATCAACTGGGTGAAGAGCTATATGTTCCTTTCTCAAGAGGCACTACAAGTGACATGCCA<br />CTGGGCAGGTAAGATCCTCTCAAATGAAGGGACTGTGAATATTTGACTAATAATACAAATATTTACTGGATATTTTACAGTGATATTTACAAATATCACT<br />GGCTAACTTTTCCCAGCTTGATATCCTGAAAGAGGCACAGTTTCAGTAGTAAATGGTAAATTTACCTTGATTGCACTGAAGGCTATTTCTTTAAAACTAT<br />TTTCTTTCCTTTTGACTATTCCATGTATCCTTTCAGAAGTAAACATTGTTTTTACCCCTTTAAAAAGTCTACTTATACCATCTACTTAATTTGGAATTTA<br />TCTAACATTGCCAGTTTGATATAGATACAGAAATTTAATGAGAAAATGCAGTTCTATATTTAGAATATGGATTCTTCAAGATGTTTCTGACACACATTTG<br />TTTTCATTGAAACATTAAACAATTATTTAGCTAACATCTGAGGAGCACATTGAATTTTGTACAGTTCAACTTTTTTAAAATGAAAGAAATAGTGTTTCTT<br />GTAGAAGGGAGGAATGGAGATTAGCACCAAAGGAAAATTTGACTCATTCTTTGTCTCATTTGGTCTTGAAGGTTAGAGTCTGAATAAGAGAAACTATGTC<br />CAGGAAGTGTATCTTATGAATAAGCAACTAATACATCACATTTTCATGGAAATTATTTTTAAATAATCAGAGTTAGTAAATTCAGTTTTTGTCTGTTTTT<br />TTTTTTTTTTTTTAACCCTAAGGCAAGCTCACAGGCCATACTTAAAGTTGTAAATATAAGCCTTAAAGAGTAAATTTCTAGGCAGAGCATGGCAAGGTAG<br />ATGAATGGATTCCATTAATGTCTGTGGAACCAACGGAGTTAAATCCTTTTTTCATTTGTCTCAAAAACGAAGCCCTAAGCAAGCTTTGCAAATGGCAAGA<br />GTAATAACAGTTGAGTCATGAACCTAAGGCTCTTAGTGTTAATGCTCTAATTCATTAAACCAACTGTTTTCCTGATGGAAGTCATTTTCTAAATGGTTTC<br />TAAGCCAAAATGCCTGGCATAATTAAAATTTAAATTTTGGTTATTTTCTTCACTCTCCCCCATTTTTTAAATTCTTTTATTTATTTATTTATTTTTTATT<br />ATTATTATACTTTACGTTTTAGGGTACATATGCACAATGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGTCCTGCACCCATTAACTCATC<br />ATTTAGCATTGGGTATATCTCCTAATGCTATCCCTCCCCACTCCCCCAACCCCACAACAGTCCCCAGAGTGTGATGTTTCCCCCCAGTGTCCATGTGATC<br />TCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGATTTTCAATTTCATCCATGT<br />CCCTACAAAGGACATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAGTCTAGTCTATCATTGTTGGACAT<br />TTGGGTTGGTCCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACATGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATA<br />TACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCACCACACTGACTTCCACAATGGTTGGAACTAGTTTACAGT<br />CCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATCGCCATTCTAACTGGTGTGAGATG<br />GTATCTCATTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTATTTTGGCTGCATAAATGCCTTCTTTTGAGAAG<br />TGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTGGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCGTTGTAGATTCTGAATATTAGCCCTTTGT<br />CAGATGAGTAGGTTGCGAAAATTTTCTCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTTTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAG<br />ATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTAATGCCTAGGTTT<br />TCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTCTTTAATCCATCTTGGATTAATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTACAGCT<br />TTCTACATATGGCTAGCCAGTTTTCCCAACACCATTTATTAAATACTTTGTATCAAATACAACTCTTCAAAATGTATGACAATTTTCTTATTTGATAATT<br />TTAATTTCATGATTTACAAAATTAAGCTCACTAAATATGAAGAAAATTCACAACTGAATGTATTCTAAATCCTAGGGAAACATTCCCTAAATTGAGTCAT<br />TTAATAGTTCTGGAACAGGGATCAGCAAATTTTGGCCTGCAACCAATTTTTTAAAATAACGTTTGTTTACATATTACTATAGCTGCTATTTTTGTGCTAC<br />CATGGCAGAGTTGAAGGAAAGGAAAAGAAAGGAAAGCAAATGCTTCCTTCTCCATAGTACTCAGATGCCTGCCAAGGTGCTGGAGCTATGTGACATAGAA<br />AGAATTTAGTAGTTGTTTTTTTTTTTTCTCCTCAGATTCCTACTATCCTATAAAATTGGAACTTTAGTCTTTTTAATGGAAAGATGATTTCATTCTTCCA<br />TTCATTTTGATAGGTTTGTCCCAATAACAGGAATATGATTTAAGTCAGCTATAACTGTGTCCACAGTTTTCTTTGTTAATATCACAAATCTCTTGTTTTA<br />GAACATAGGATGAGACAAGACAAGATCTTTTATATGGCTGGTTTGGAAAGTGTCTGCTATGGAGACCCAAATTTTCCCACATTTAAGTACAGAGGTGAAT<br />TTGGTGGGGCAGGGGTGGAGTCGGGGGTGGATAGTATCAAACCTAACTTTGACCTTCAGTTCAAACCAAGTTCTTCAATAGACTTCTTCTAGTAATATAC<br />ACAGAAACTGGTATTTGGATTCCTATTTTTTTTTTTCTAAATCACCCAATTGACTGAGAATTTGGAGATAGGGGAACAGAATTAATATTATGCCCTAACT<br />CCAGCCCCAACCCTCTAACTTTAGCACTCCTGGGGCTGACCAGGAATTTCCCCTGGCCAGGAAAGAAACACATTTACCACCAAATCCAATACGTCAAGTG<br />GACAAAAATTTGTAAATTGAGAGGAGAAGTACTTCTCTCGCTTTAGCACACACTGTTTAGCCCATAAAGTAGAATCATTTTCTTTGTGGAAGCATAGAGA<br />GAACATCTCCCTTCTCTTCACATCTAGCCCAAAGCTTGGTCCCTTCAGACCCTCTTGGCCTTGAGGGCACACTGTGATTGACAAGTGGGAAGAAAGTCAG<br />AATTCCTTTTGTGGCTGCAATAGAAAGATATTCTTCTGAAAAATGAATTCCACTATTTATATGTGAATATAGAGAAATTCAGGGCTAGCTTCATGGATAC<br />ATGACCTGTGCACTTGTACAGAGTCCCATGCTTAGAAGAGTACAATGTTTGGTTTAATATTCTGCTATCCCTGTCTCAAAATAGGCCCAATAAATTAGGT<br />AGCTATCCTGGGTAGGGTATTAGAGTCACATTCTCTTGTTAAGTTCAACCAGAAATAATGTCATATTTTGATGTTTATGTTTTCCCATGTATACTTCTTA<br />ATTGCTGCATTTCTCAGTTGGGAAAAAAAATTGGTGTAATATTGCCCACAAAGAATCTTCATTTAAAGTTGGTCAAATTATCATTTATGTTTTCCCCACA<br />CAGGATGGGTTACACCCAGAAATCTCACATTTAGTACTTTGCTTAAGCAGATTATTAAATGTCTGTCCATGAATAACTTCTCATAGACTTGCACAACCAC<br />AACACATCTTTAGAAGTAAAACCCCAATTTATGTGTGAATAATGATTTGATCACAAATCCAAGTGTAACAATATTTGGACTGAGAATATTGGTGGCACAT<br />AATAGTTACTAAATACATCAATTTATTTACATTAAATAAATTAGTTTCACAAAAGACACGATCTAAAATTCTATTTTCATGTAGGAGGCAGTTTGTAAAA<br />AAATATATTATTTG

Expression



Full and truncated open reading frames discovered in TCONS_00025076

In silico ORF/peptide predictions
>peptide 1 (93 aa)
MGTQNLSLLILSIFILRLLRVGETRPQTPLLRWGSSGERPFPSFFRTDRKAGAPHSPSPLCPGRDAWPKGPTQLARWFSDTSHRSLPFPLPGG

>peptide 2 (72 aa)
MLSLPTPPTPQQSPECDVSPQCPCDLIVQFPPMSENMRCLVFCSCDSLLRMMIFNFIHVPTKDMNSSFFMAA

>peptide 3 (69 aa)
IGPQRISICLMSRTESETARWEGVPGESPTSLRTGNAHWSENTEVGALCSSQESDSSSSCVEPGIQTAG

>peptide 4 (67 aa)
MVGTSLQSHQQCKSVPISPHPLQHLLFPDFLMIAILTGVRWYLIVVLICISLMASDDEHFFMCILAA

>peptide 5 (60 aa)
MRQDKIFYMAGLESVCYGDPNFPTFKYRGEFGGAGVESGVDSIKPNFDLQFKPSSSIDFF

>peptide 6 (58 aa)
MSYFDVYVFPCILLNCCISQLGKKIGVILPTKNLHLKLVKLSFMFSPHRMGYTQKSHI

>peptide 7 (54 aa)
MCDTCAHGLLSEARHVTKPNINWVKSYMFLSQEALQVTCHWAGKILSNEGTVNI


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT005531 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 1.0E-127)