Detailed information on TCONS_00026401

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00006081 processed_pseudogene novel protein coding TCONS_00026401 1033 1421 UTR3 Trans

Sequence

>TCONS_00026401 (4474 nt)
GTACAGTCCAGCCCTACGGGGCTTAGCAGGGATTCTCCCTGTGTGCAGAGACGAGAGATAGTAAGAAATAAAGACACAAGACAAAGAGATAAAGAGAAAA<br />CCGCTGGGCCCAGGGGACCACTACCACCAAGATGCAGAGACCGGTGGTGGCCTCAAATGGCTGGGCGCACTGATATTCATTGCATACAAGAAAGGGGGCA<br />GGGTAAGGAGGGTGAGTCGTCCAAGTGATTATAAGGTCAAGCAAGTCACCTGATCATGGGACAGGGGGCCCTTCCCTTTTAGGTAGCCAAAGCAGACAGG<br />GAAGGCAGCATACATCAGTGTTTTCTTCTATGCACTTGTAAGAAAGATCAAAGACTTTAAGACTTTCACTATTTCTTCTACCGCTATCTTCTAAGAACTT<br />CAAAGAGGAACCAGGAGTACGGGAGGAACATGAAAGTGGACAAGGAGCGTGACCATTGAAGCACAGTGCCACAGGGAGGGGTTTAGGCCTCCGGATGACT<br />GCAGGCAGGCCTGGATAATATCCAGCCTTCCACAAGAAGCTGGTAGAGCAGAGTGTTCCCTGACTCCTCCAAGGAAAGGAGACTCCTTTCACAGTCTGCT<br />AAGTAACGAGTGCCTTCCCAGACACTGGCGTTACCGCTTGACCAAGGAGCCCTCAAGCGGCCCTTATGCGGGTGTGACAGAGGGCTCACCTCTTCCTTTC<br />TAGGTCACTTCTCACAATGTCCCTTCAGCATCTGACCCTATACCCGCCGGTCATTCCTTGGTTATATTAGTAATACAAAAAGAGTAATATTAAAAGCTAA<br />TGATTAATAATGTTTATACTAATGACTGATAATGTCCATGATCATCTCTATATCTAATCTGTATTATAACTATTCTTATTTTAACTATTTTCCTTATTAC<br />ACTGCAACAGTTTGTGCCTTCAGTCTCTTGCCTCGGCACCTGGGTAATCCTCCACCCACAATATATATTTTAATTGACATCCATCGTGAATAACTTGCCT<br />TTTCTTCCCCTTTTTCTGAATACCTGTGAATATTTTATCATAGACGAGATCTAATCCATAGTTCAATATTTAGGAGTTGCGCTTCCAGAGTAGTAATTAT<br />CAAATGTTTAGCTGTAACCACACATGATAAGACAATTCAAGGCAAACTCAGTAAGAACCAGAGAAACTGACTTATATATCTTCATAAGCACAGGAAAAAC<br />CCACCCACTCCTACCAAAACTAATATTAAAACTAATTAAGGTGTATGTCTCTCTATTGTTTTTCCTGAAGATCCTTGGATATGCCTACTTGTTTGAAATC<br />ATCTATATCTTGCCTCAGACATAGAGAAACAATCAAATCAGTAGCCTCAGATGAGACCTTACATGAGGTAAGTATTTAACACTTCTATAAAGTATAATAT<br />TGATTATGTTTGTTCTGAATTACAATTGACTCTTAATTCATCTCTCCATCTATATTTTCTTTGGCTTCCAGTTTATTTTCCATGACACAGTAAAGGTGGC<br />CTTTATAAAATGTAATTCTAACTATTTCATTCCCTGCTCTCAGGGTCTATATGATAAGGTGTAAGCTCCTTAAAATGGCTACAAAATCTTCAGGCATCTG<br />GCCCATGCCTACAATCAGCCTCATCTCTTTCTATCCCATAGGCATATCATGCTACTCCTTGTTCTATGAGGCCTCTACTAGTTGTTTCCTTTGCCTGGAA<br />TGGCCTCGACGCATATCCATGTTATTGTCCAAAGGAACTACGACTTAAAGTTTCAAAGCACACGCTCAAGCAATGTTTTCTCCATGATGCTCTCCTTATT<br />GTCACCCCCAAAAGTTAATCATTCCTTTTCCTGAATAATTTTCATACCTTAAAGATGTTTCTCTTATTTCTCACATTTCATTGCACTTGTTTGTTTACCT<br />GTATATTTTCCCCTGATAGACTTTAAAATCCTTAAGAGAAAGTTCTGTTTATCTTTAGATCCTAGAAAAGTACCTGATATAGAATAGACCCAGTAGATGT<br />TTATTCAATAAATAAATAAATAATGGTCATTTGAAAAACTAGAAAACTTAAGCCATACATTTGCCAAGTAATTTCCTAGGCCTCTACCTTTATCGACTAT<br />ATATAGTATTTCAAAATCTAGTCAATGTTTATTATGTGTTTCAGGATACTGTACATCCATTCGTGGAAGTTTCTTTCCAGCACACTGTATACAAAACCAA<br />TACAGCAAGTGGATCTCATCCATGCTGGAATGAAGAAATTAAAGTAGATTTTGTCTCACCAGGACATGATTATAGCTTCTCAAGCTTATCTAAAATAAAA<br />GATAACATATATATCAACATTTTTGATGAAATGATGACTGAAAAACATGAGGATCACTGTCTCAAGAGCTGTAGTGGTCACTCATATATAAGAAAGAATT<br />GGCTTGGATGCATTGTCTTCCCTTTTTCTGCTCTTCTGCAACAATCTGAGGATCGAAAGGACTCTGAAGAGTAAAGTGATGGAATGGCGACCTAAACACC<br />CAACACATTGGAATCGACAGTGTACTTTTATTTTGCGACAAATCCTTCCTAAGCTGGAATTTGGCATAGGAAGCTTTGTTTCATCTGAAGGAGATAATGA<br />ATTTGAAAGAATACTACAATTTTATTGGGTTTGTATATGATTTAATGCATTAATGACATTTGTTTTATATATGTTGTTAATTGCTAAATAATAGCAGTCT<br />TAAATATTTCTGAAAGGCCTTTTATCTTGATCCTTAAAGATAGATGCTATAGCATTAAAATACACTTACTGAAGAATCAATATTGTTAAAATGTCCATAC<br />TACCCAAAGCAATCTACAGATTCAATGCAATCCCTATTAAAATACTAATGACATTCTTCACAGAAATAGAAAAAACAATCCTAAAATTTATGTGGAACCA<br />CAAAAGACTCAGAATAGTCAAAGCTATCCTAAGCAAAAAAACCCACAAAACTGCATGAATCACATTACCTGACTTCAAATTATACTATAGAGCTTTAGTA<br />ACTAAAATAGTATGGTACTGGCATTAAAACATAGACCAATGGAACAGAATAGAGAACCCGGAAACAAATCCACACACCTAAGTGAACTCATTTTCAGCAA<br />AGGCCCCAAGAACATACACTGGGGAAAATACAGTCTCTTCAATAAATGATGCTGGGAAAACTGGATATTCATATGCAGAAGAAGGAAACTAGGCCCCCAT<br />ATGTCACTTTATGCAAAATCAAATCAAGCTGGACTAAAGAGTTAGTTTAAGGCCTCAAACTATGAAATTGCTACAAGAAAACATTGGGGAATGCCTCCAG<br />GACATTGGTCTGAGCAAAAATTTCTTGAGTAATACCCCACAAGCACAGGCAACCAAAGAAAAAATGGACAAATGGGATCACATCAAGTTAAAAACCTTCG<br />GCACAGCAAAGGAAGCAATCAACAAAGTGAAAAGACTGAGAGAAAATATTCGGAAACTACCAATCTGACAAGGGATTAATAACCAGAATATATAAGGGGC<br />CCAAACAACTATAAGAAAAAAATACAATAATCTGATTTTTTAAATGGGCAAAAGACTTGAATAGACATTTTTCAAAAGAAGACATACAATTGACAAACAG<br />GCATATGAAAAGGTGCTCAACATCATTGATCATCAGAGAAATGCAAATCAAAACTAAATAAGGTATCATCTCACCCCAATTAAAATGACTTTTATTCAAA<br />AGACAGACAATAACAAATGCTGGAGAGGATGTGGAGAAAAGGAAACCTTTGTACACCGTTAGTGGGAATGTAAATTAGTACAACCACTATCGAGAATAGT<br />TTAGAGGTTCCTCAAAAAACTAAAAATAGAGCTACCATAGGATCCAGCAATCCCACTGCTGGGTATATACCCAAAAGAAAGGACATCAGTATATTGAAGA<br />CATGCCTGCACTCCCATGTTTGTTGCAGCACTGTTCACAAGAGCCAAGATTTGCAAGCAACCTAAGTGTCCATCAATAGATGAACGGATAAGGAAAATGT<br />GGTGGATATACACAATGTAGTACAGTTCAGCCATAGAAAGGATGAGATCCTGTCATTTGCATCAACATGGATGGAACTGGAGGTCATTATGTTAAGTGAA<br />ATTAGATAGGCACAGAAAGACAAACATCACATGTTCTCACTTATTTGTGGGATCTAAAAAGCAAAACAATCAAACTCATGGAGATAGAGAGTAGAAGCTT<br />ACCAGAGGCTGGGAAGGGGAGTGGGAGTTCAGAGGGAGGTGGGGAATGGGTAATGGATACAAAAAATAGAATGAATAAGACCTAGTATTTGATAGCACAA<br />CAGGGTAACTATAGTCAATCATAATTTAATTGTACATTTAAAAATAACTAAAAGTGTATAATTGAATTGTTTATAACACAAAGGATAAATGCTTGGGGGG<br />ATGAATAGCCCATTTTCCATTATGTGACTACTATGCATTGCATCATTGCATGCCCATATCAAAATATCTTTTCA

Expression



Full and truncated open reading frames discovered in TCONS_00026401

In silico ORF/peptide predictions
>peptide 1 (75 aa)
VQSSPTGLSRDSPCVQRREIVRNKDTRQRDKEKTAGPRGPLPPRCRDRWWPQMAGRTDIHCIQERGQGKEGESSK

>peptide 2 (68 aa)
MKLLQENIGECLQDIGLSKNFLSNTPQAQATKEKMDKWDHIKLKTFGTAKEAINKVKRLRENIRKLPI

>peptide 3 (66 aa)
MIRQFKANSVRTRETDLYIFISTGKTHPLLPKLILKLIKVYVSLLFFLKILGYAYLFEIIYILPQT

>peptide 4 (65 aa)
MIRCKLLKMATKSSGIWPMPTISLISFYPIGISCYSLFYEASTSCFLCLEWPRRISMLLSKGTTT

>peptide 5 (55 aa)
MSILPKAIYRFNAIPIKILMTFFTEIEKTILKFMWNHKRLRIVKAILSKKTHKTA

>peptide 6 (53 aa)
MSMIISISNLYYNYSYFNYFPYYTATVCAFSLLPRHLGNPPPTIYILIDIHRE

>peptide 7 (53 aa)
MEWRPKHPTHWNRQCTFILRQILPKLEFGIGSFVSSEGDNEFERILQFYWVCI

>peptide 8 (50 aa)
MRPLLVVSFAWNGLDAYPCYCPKELRLKVSKHTLKQCFLHDALLIVTPKS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT047364 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 2.0E-102)