| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000361228 | Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 | protein coding | TCONS_00027227 | 504 | 298 | UTR3 | Trans | |
| ENST00000394622 | STEAP family member 2, metalloreductase | protein coding | TCONS_00027227 | 545 | 306 | UTR3 | Trans | |
| ENST00000395811 | myosin phosphatase Rho interacting protein | protein coding | TCONS_00027227 | 564 | 301 | UTR3 | Trans | |
| ENST00000475187 | THO complex 5 | retained intron | TCONS_00027227 | 510 | 306 | noncoding | Trans | |
| ENST00000553936 | gephyrin | nonsense mediated decay | TCONS_00027227 | 551 | 310 | CDS_UTR | Trans | |
| ENST00000604000 | Lix1 homolog (chicken) like | protein coding | TCONS_00027227 | 555 | 295 | UTR3 | Trans | |
| ENST00000620139 | melanoregulin | protein coding | TCONS_00027227 | 525 | 302 | UTR3 | Trans | |
| TCONS_00001594 | lincRNA | novel protein coding | TCONS_00027227 | 508 | 304 | UTR3 | Trans | |
| TCONS_00075840 | forkhead box N3 | novel protein coding | TCONS_00027227 | 531 | 311 | UTR3 | Trans | |
| TCONS_00075841 | forkhead box N3 | novel protein coding | TCONS_00027227 | 531 | 311 | UTR3 | Trans | |
| TCONS_00108999 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | TCONS_00027227 | 619 | 295 | UTR5 | Trans | |
| TCONS_00109000 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | TCONS_00027227 | 619 | 295 | UTR5 | Trans | |
| TCONS_00109009 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | TCONS_00027227 | 619 | 295 | UTR5 | Trans | |
| TCONS_00109011 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | TCONS_00027227 | 612 | 295 | UTR5 | Trans | |
| TCONS_00109011 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | TCONS_00027227 | 619 | 295 | UTR5 | Trans | |
| TCONS_00109011 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | TCONS_00027227 | 591 | 291 | UTR3 | Trans | |
| TCONS_00109012 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | TCONS_00027227 | 619 | 295 | UTR5 | Trans | |
| TCONS_00109012 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | TCONS_00027227 | 591 | 291 | UTR3 | Trans | |
| TCONS_00109013 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | TCONS_00027227 | 591 | 291 | UTR3 | Trans | |
| TCONS_00109013 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | TCONS_00027227 | 619 | 295 | UTR5 | Trans | |
| TCONS_00109014 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | TCONS_00027227 | 591 | 291 | UTR3 | Trans | |
| TCONS_00109014 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | TCONS_00027227 | 619 | 295 | UTR5 | Trans | |
| TCONS_00118345 | l(3)mbt-like 4 (Drosophila) | novel protein coding | TCONS_00027227 | 584 | 315 | UTR3 | Trans | |
| TCONS_00124891 | zinc finger protein 540 | novel protein coding | TCONS_00027227 | 601 | 310 | UTR5 | Trans | |
| TCONS_00147745 | lincRNA | novel protein coding | TCONS_00027227 | 514 | 270 | UTR3 | Trans | |
| TCONS_00152126 | cordon-bleu WH2 repeat protein-like 1 | novel protein coding | TCONS_00027227 | 549 | 296 | UTR3 | Trans | |
| TCONS_00152127 | cordon-bleu WH2 repeat protein-like 1 | novel protein coding | TCONS_00027227 | 549 | 296 | UTR3 | Trans | |
| TCONS_00160920 | protein tyrosine kinase 6 | novel protein coding | TCONS_00027227 | 519 | 304 | UTR3 | Trans | |
| TCONS_00160924 | protein tyrosine kinase 6 | novel protein coding | TCONS_00027227 | 519 | 304 | UTR3 | Trans | |
| TCONS_00161482 | BTB and CNC homology 1, basic leucine zipper transcription factor 1 | novel protein coding | TCONS_00027227 | 604 | 319 | UTR3 | Trans | |
| TCONS_00168219 | THO complex 5 | novel protein coding | TCONS_00027227 | 624 | 303 | UTR3 | Trans | |
| TCONS_00168220 | THO complex 5 | novel protein coding | TCONS_00027227 | 624 | 303 | UTR3 | Trans | |
| TCONS_00182243 | homogentisate 1,2-dioxygenase | novel protein coding | TCONS_00027227 | 597 | 304 | UTR3 | Trans | |
| TCONS_00184373 | neutral cholesterol ester hydrolase 1 | novel protein coding | TCONS_00027227 | 528 | 294 | UTR3 | Trans | |
| TCONS_00184374 | neutral cholesterol ester hydrolase 1 | novel protein coding | TCONS_00027227 | 528 | 294 | UTR3 | Trans | |
| TCONS_00203663 | ribosomal protein L3 pseudogene 6 | novel protein coding | TCONS_00027227 | 542 | 293 | UTR3 | Trans | |
| TCONS_00203663 | ribosomal protein L3 pseudogene 6 | novel protein coding | TCONS_00027227 | 549 | 312 | UTR3 | Trans | |
| TCONS_00205177 | peptidylprolyl isomerase C (cyclophilin C) | novel protein coding | TCONS_00027227 | 570 | 313 | UTR3 | Trans | |
| TCONS_00239255 | tumor protein D52 | novel protein coding | TCONS_00027227 | 601 | 303 | UTR3 | Trans | |
| TCONS_00249285 | zinc finger protein 883 | novel protein coding | TCONS_00027227 | 667 | 315 | UTR3 | Trans |
>TCONS_00249285 (4397 nt)
GGCTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGCGCCTGTACTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCG
GAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGAGACAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAGACATCACGCTTAAATAAGTAATGAAGTATACTGAGATGTTTTTGTTATAAACTTGGCTAAGAAAGGTATTTAGTACCTGAAATTTTCGCTTACT
AAAGTAACAAAAGGCATGAGACTTGGCTATTGATTTTTAAAGTGGAATAACTTTTCTCCCCTCAAAAATGTCTTTCTTACTCATATAAATAATGCCTTTT
ACTTGTATATCTTTTTACTGTTCAAAGCACTTTTGCAGTTATGCTATTGTTTCCCTCACAACAATACTGTGAGGGAGGTAAAGTATTATTATTCCCATTT
TAGAGATGGGTCCTTTTGTAACTGCCTATGCTTACACAGTTCATTAATGGAAGGGCTTGAACTTAAACTCTTTTATGGAGTCCTGGAGTCTAGACCTGGG
CCCCAGTCCTTAATATTACACCATGCTTTTTCCTGCCAGCAATAAAAGCTGCTCCATCTAGTTTTAAACTCATGTCAGTTTCACTATATAGCAATCATCA
TAGCAGTTACCTACAAAGGGACAAACATATACTTGTCTATTTTATAGGTATATAACAGACCGAAACCATTAAGGTACCCCAACAACAGTCGAGCTTACTT
GTTTTCCCTCAGTCAAATGTTACTGGGACCCGTAAAATGGACCCAGTGTGAGTATATCTTCATTTTCAGAGAACTGGTCCCAATTCCTATGTATGAATAC
TATTTTTGTCATTCTTTTCTTAATGAATACTCACTACAGAAGTATTCAGAATGATCACCATTCCTTTACAACTGTAAGACGCCAAAGCAAAAAGTATATT
TTGCATGATTCCTTTCCTTCACAGAATACTCCTACATGAAAATGTTTTTTCTAAAACAAAACCAGCCCAAACTAGTTATCAACACAGTCATTTTAAAAAG
AGTCCTCCAAAACTTTAAATACCCTTTCACATGCTTTATTTCCTATGGGAGAACTGATGAGGAAAATTATCATAAATGTTTAAACTTTTAATTATAAAAT
TTAAATTTCCATTTAAAAGGAAAGCATCAATATTTTAAAAGATTATATTTCAAAATGCTATGTTACTGTTTTTCAGTAATTAAGTCTTGTTATCCTCTCT
ACAAAATTCTTGACCAACTGCAATCTACATTTATTTCCTATTACATTGTCTTTCAATGTAAGCTCTTCAAATTAATCACCATATTTTTACCATACAGCTG
CACAAAAGCTTTAGAAAAAAATTTCACAGAAGCATCGAAAGCAAGCAATATATGTAAAAAATTTTTTTTTACTAAATCAGCATAACAGACTAAAGCTGCA
GCATCTGCTTTCATGTTACATTTGGCAAAAACAAAACAAAAAGCACCCCCAAACCCCCAAAATAACAAAAATCTCAAGCAAGTAGAGACGATAAACTTCA
TAACACAAAAGAAAGATTCAAAACCTGTTCCCTCAGTGATTGCTGTTGTCAGTTTGGGCATGCAGCAAATTTGTTATAACCATGATGGAAATGAAAATAT
TTTAAGAATCTAGACAGTATTCTATTTAACACTAATTCAAAAACCAAGAGGAAGAAAAATAACACAAGGGGACACCATACATACATAAACATGAAAAGCT
AGCTTACATAATTACATAATTAGAAAAGTTAAATAATTTAGTAAAAATAAATTCCCAGTATAAACCCAAAAAAGCATAGCTATAAATGCAATCCAAAACA
ACCAATTAGTAAGCTGGTCATGTTTTTACTGGAAAACAACCTTTCTCATTTTTGTTCTTACACAAGCAAGTAACTGGAGAAGCAGGCCAGAGTGCATACG
AGGATTTAAACATGGTTGTATCTGTGGTACTTTAGATGCAACTTTACCCTGTTCATTTGAAAGCTTAAATAGACCTGTCTGCTACACAGACTCGGATGGG
CCAAATAAGTCATCTGATATGCTGCTGAATGGCTGAGAGTCTATTAGTTGGCTTATTTCATTATCAAGGTCTTCTTCTGTATCATCTGTGTACTTGCTTA
TTTTTTTGGAGTGCTGGTCTAAAGACAGACTTTCTAAAGTTTCTATATCTTCAATGCCTGCTCTGTAGTGAATCATAAGAAGTGTTAGAGCTTGTAGCCT
TTCACCTGATTTAGCTAAGGCAGCAGAAAGAAGTGATTTTTTCCTTGTATCAGTTGTCTCTTTTTCTTCTCTAACAAGGGAATTATTGTGTTCCAACTCC
TGATCAATTTCATTCTGTAGCTTATCCAACATGAACTCTAGTTTCTGGATCCTTTCCTCTGTAGGCAAGCCCCTGTACAGATCACGACCAATTTCTTTAA
CTGCAATGAAAACACTGTCATCCAGACCACCCTCTTTTCTCACTAACTTTATTCCTGTGCTGTTTCCCCGTTTAGAAGGACTGTTTGGACCACAGACCTC
CGTGTCACTGCCTTCGTTGTCTGACGTGTTGGGTGTGTGTTTTGGTGAAGGTTCTACGAGATCGGTTCCTGGTTCAGAAAGGCGAGTTTTAGAGACTTGA
CGCAAATTTAATAAACGAGAACTAGTATTGATAATATGCCTTGTCAAACCTGTTGTTTTATTGACTGACTTGCTAGCTTCAGCATCAACACGAGGAGGCA
GGCCTAAGAGGGTTTCCTGTCCTTCCAGCCTAAGGTTTTTCAGTGTCCTGTCTATTCGCCTATCAGTTGCTCCACAAACAGAAGTCTCAGCTAGACACTT
TTCTTGACATTTTTTATGGCAAACATAAGCACAAAACATACACTGGGAAGCTGCTTTAGTCCAAACTTTTTTCTTACAGTAGTCACACCATGTTGGGTTC
TGGAACTGAGTATCCTGAAAACTGTGTTTGTTTTCTGTTAAACCCATCTGTCCAACAAATTGCTCCTCTTTAGGGAGAACAGAAACTTCTTCAACCAAAT
GGGGTTCTTTTTCTTTTTCTACGTTAGTAACTACATGGTGGTCTGATTCTCCTTCTTTCAAATATTTGAAGTGAATAGTAATGTCACCATAGCAAAATTT
GTCATTGAATCCCTTTTGCATACTCAGATTGCGTAGTGCGGTTCTAGTGACTATAGCCTTAGGTGAGGGGGCTTCCAGTCTCAATTTGGAAAGGTATTCC
GTGTTTGATGTAGCTAGGCATCCTAAAGCCACATCTTCAAGTTTTAAACTAACATGCCCCAAACAGATGAGACCTCCCAACTTGAAAGGATCCCTGCACC
ACAATGCAATGTTTAAGTACCTGTGACAGGCTTCTATGTCAAACAAACAGGATGCTCTGGTTCTTGTCCATTTTCCTAGCTTATTACGATAAAGAATTTC
TGATGATTCCCATGTTTGACGGTCGTCCGAACTGTCCTTAGTAGGGCAGGAAGTTTCTGAAGTGACATCTTTGGCCACTTCTTGCTTTGCTAAAAATTGC
TTAGGTGCAGCTGCATCGTCTATGGCATCCACATTTTTTGCTTGCTTTTCAGCAGATTTATCTACAAGAGGAGGTGGCACCACCTTCTCTGGCTTTTCAA
CGAGAACATCTGGTTCTGCCTGATTTGGAGCATCGGCGGAAGGCAAAGGAACTTTCGCTTGTGGTCGTGGTGGCACAGGTGGTTTGAAAGCAGATCCTTG
GGTTGGTTTTGACACTTGTGCTGGGTCTGTTATCTCAGAAGTTTTTAGGGGTGGAGGTTTATTTCCATCTTTGGACTGAATTTTCGGTGGTAGTGGGTGA
CTTCCTACAGCTAATTTACGGTTTAAAACTGGTGATATAGCTCCAAGGGGTTTAATAGAAAGTGTTGTTGGAACACGTTTGGGACTATGACTTAATGATT
GTGCCTCATCTTTGAACTCATTTTGTGCTCTGACATCACTTGCCAAGTCTTCAAATTCAGAATCCAGCTCTCTACTTTCAGTATCTACTGTCAACCCGGC
AGCTTCCTCTTCATAACCCGATTGGCATGAGCTTGACAAAAAGTTTTCTTCCAACTGGCCAAAGTTATCTTGCAGCACTGCACCTTGATTACTCTGGCCA
ACAGGCCTTTCATAGTACACCAGGACTCGGTCACCAGCCTGCTTGATAAGCTTCAACACTTGCAGTGTTGATGTGATTTTCACACCTGGTTTAAGATT
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.