Detailed information on TCONS_00027978

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000375120 OTU deubiquitinase 3 protein coding TCONS_00027978 553 299 UTR3 Trans
ENST00000395811 myosin phosphatase Rho interacting prote... protein coding TCONS_00027978 556 319 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript TCONS_00027978 541 309 noncoding Trans
ENST00000588483 tropomyosin 4 protein coding TCONS_00027978 530 295 UTR5 Trans
TCONS_00017972 transcribed_unprocessed_pseudogene novel protein coding TCONS_00027978 560 307 UTR3 Trans

Sequence

>TCONS_00027978 (3742 nt)
CTGCCACTTTCCCTCAGGGAGACACTGCTTTGGAGAATACACCCAGTGCTCCCCTTACTTGAGCCAAGTAATAAAACTCCTATTGATCAAAATCTGCATT<br />CTCGTGGAGAGTCGTTTGTTGCTTGACAGGTGAATGAACGCTGTTTGTTTTTTTCGGATAACAAATATGAGGTATTAAACAAACAAACAAAAAACCCCAG<br />ACTTGAAGCTTTCCCATAATAACAACAAAGAGTTTGAGTAAGAATTCCACAGCTTGCCTTCATCTGTGGCAGACTTGCATGAATCATTTTCAAATAAAGA<br />TAATAACTCAGTTGGTCTTGTAGTCCAAACAAAATGTGCTACTTCAGGAACATTCACTTCCTATGTGGACTTTGCTGCTGAGTCAGTGTGAGACCTTGAA<br />CAAGTCTCTGTTTGTTTCGTACCATTCAGATTTCCTCGTCTGTAAACATTAAGTATCTACATTCACTAAAAGTAGTTCTGAATGAATGTTATTTAATGGT<br />GCCAATGATGTTGGAGGATACCTGTGCATCTCATGCTGTGGTTACAGCATCAATTGTGATGAATATAGGATACTGAGTCCCTCCTAGAAATGACTTCAGG<br />AACTTCACCCCCCAACTCCACAATCTGGGAATGGCAGACAGATTCAGCACCAGGAGAACATCACATAAAGGACAAGTGTGTATGTTTAAAAATGGCAAGT<br />TTCGGCCTGGCATGGTGGCTCACGTCTATAATCCCAGCACTTTGGGAGGCTGAGGTAGGTGAATCACGAAGTCAGAAGGTCGAGACAATCCTGACCAACA<br />TGGTGAAACCTTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCTCACACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGC<br />TTGAACCCAGGAGGCAGAGGCTGCAGTGAGCCGAGATTGCTCGCTGCACTCCAGCCTGGTGAGAGTGAGATTCCGTCTAGAAAAAAAAAAAAAAAAAAAG<br />ACAAGTTTCTGCTTGACTTATAAGACCTAATCCAATGTATTTCTAAATCAAATAACAGATAGATGAAGGCATTTTTAAAGCAATTATCTCAGGTTTTCAA<br />AACAGGTTTAAGAATGCGGTATCAAAGCCTGGACTAGGTTTCAATATTTCAGTATTTACAGATGACGTCTCAGAAAACAAAGAAGCCGTTATTGACAAGT<br />GCTTTCCAGGCCAAAGGCAAGTGCCAGGGAGTATAGTGACAGTGGATTTGCTGCCAAACTGATGATTTTTTCTTGTTTTCTTTTCAGCCCTATTTGTCCT<br />GGGCTCGGAATGTTGATGCAGCTATTTCTATTTGGTTATGGGTAAGGAAACGCTGCATTTATCACTGTGCCTACGTTTTCCTTCAAAGAGGCACGTGTAA<br />CTGTGTTCAATTGCAACTGAGAGCGTATTTTAAAAAGGAATTTGGCTTCAATGTCATTAACTGACCTTAAATAAATTGCTTGTGAGATTTTACAATATTA<br />AACTTAGCTCAGAAGAAATGCTGAAATTAGTAAATAATGATTTTTAAGAACTTATATATGTCATCTTTTAAAAAACCTGCTACTTCAAATAACTTCAAAG<br />TGAGGAAAAGCTTTTATCAGCTTTAGAGTTAAAATGCAGATGTTAATCGCAGGTTAGGATCTTGATAATTTCTAAAAAGACAAATGCAGCATTATTTGTA<br />AAAGTACATACAGTCGTGTACAGCATAACAACGTTTTGTTCAACGAAGGACCACATATACCATGGTGATCCCTCAAGATTATAATGGAGCTGGCAAACTC<br />CTGCCAACTCATCAGGCAGTCGCCACTGTAAGACTGTAGCAAAATGCATTAGTCCTGTGTTCGTGGTGATGCTTGTGTACACAGACTTACTGCACTGCCA<br />GTCATATAAAAATACAGCACATACAATAAGGTATAGCACATAATACCTGACAATGATAATAAATGATTAGGTTACTAGTTTAATATGCTATAGTTTTTAT<br />TGTTATTTTAGATTGTACTCTTTATGTTAATATATTATTAAAAGGTCAGTTGTGAAACAGCTTCAGGCACTTCCTTCAGGAGCTATCCAGAAAAAGGCAT<br />TGTCATCATAGGAGATGCCAGCTTAATGCGTGACGTTGCCCCTGAAGACCTTCCAATGGGGCAAGAAATGTAGGTGGAAGACAGTGATAATGATCCTGAC<br />CCCGTGTAGGTGTAGGCTATTGTGTGGTTTGTGTTTTAGTTTTTAACAAAAAAGTTTAAAAATTAAAAAATTAAACAATATAAGAGCGCTTATAGAATAC<br />GGATATAAAAAGAGACAATATTTTTGTTCAGCTATACAGTGGATTTGTGTTTTCAGTGGAGTGTAATTACAAGAGTCAGAAAGTTAAAACAAAGTGAAAA<br />GTTTATACTGTAAAAAAAGTTATAGTGGGCTAAGGTTAATTCATTATTGATGAGAGAAATTTTTTTGTACATTTTGTGTAGTCTAAGTGTACAGTGCTTG<br />TAAAGTCTGCAGTAGCATACAGTAATGTCCAAGGCTTTCACATCCACTCACCACTCGCTCACTGACCCAGCCAGAGCAACTTCCAGTCCTGAAAGCTGCA<br />TTCATGGTGAGTGTCCTACACAGGTGCATCATTTTTATCTTTTATACCATATTTTTACTGTATCTTTTCTATGTTTAGATATGTAAATACCATTGTGTTA<br />CAATTGCCTACAGTATTCAGGACAATAACAGGCTGTACATGTTTGTTGCCTAGCAGCAGTAGGTGTGTAGTAGGCTCTTCTGTCTAGTTTTGTGAAAGTT<br />CACACTATGATGTTTGCATAACAACAAAATCACCTATGGATGCGTTTCTCAGAATGTATCCCCATTGTTAAACGATGCATGGCTCTGTGTGTGTATGTGC<br />AGGACTCTGTGTGTGTGGTATATGCATACCACATACGCACACATCCACACTATACTATGCACTCTACATATATACAACTACATAGGCAAATATAAAGCTG<br />CATGTGCATAAATACACAAACAAACACACATACATATGTATAAAAGGTAATGTATTGATATTAATACTGACAATGTGTACTAAGCATATATTTATATACC<br />CTTAAATGTATATTATTTTAATACATACTATATTATGTTATATACTAATACACTTTTTTAAAACTGAAAGAAATCTCGTTGCCAATTTGTGTTTCTAAAT<br />ATGATGTCCATATTTTTTCTGATTTTATTACTATAGCTGTGATCACGTCATGTAACTTAATTTTGATGATGTTTCTCACAGTATAGTTTGAGGGTATCCA<br />GCCTCAGATTATCTGAGGATGTAGCTCAAGATTTCCTAATTTTGCAAACAGCAAGCTTCCCAGGAGATTCTTAGATTCCTGCTAACAAAAGGCGGAGACT<br />CACTGGACAGTTACTGAAGATAGACAGTAGGGGGCGGAAGGGCCCACGCTTCTTTGATATTGGTGGCTTTGGTTTTTCAGTGACGGGGGACACTTTGACT<br />TCAGGTATGTTCTGCATTTAGAATTTTCAAATGAACGTTTCTTGTCTGTTCCCTTCTTTTTTCTGCCTCCAAACATAATGTCTATCATTGTAAAAGTAAT<br />AAAAAATCACTGAACAAAATTTGGAAAATACCAAATGAATAACAATAGAAATAAAGTAAAAAAAGAACCACTCAAATTCCCATCATCAAGAAATAAACAT<br />TCTGATAATATTTAATTTTATTTTCCTATATATATTGTGTGT

Expression



Full and truncated open reading frames discovered in TCONS_00027978

In silico ORF/peptide predictions
>peptide 1 (77 aa)
MTSGTSPPNSTIWEWQTDSAPGEHHIKDKCVCLKMASFGLAWWLTSIIPALWEAEVGESRSQKVETILTNMVKPCLY

>peptide 2 (53 aa)
MSKAFTSTHHSLTDPARATSSPESCIHGECPTQVHHFYLLYHIFTVSFLCLDM

>peptide 3 (51 aa)
MRFSECIPIVKRCMALCVYVQDSVCVVYAYHIRTHPHYTMHSTYIQLHRQI


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT011101 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8WTZ3|YS049_HUMAN (Evalue: 1.0E-18)