Detailed information on TCONS_00027978

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000375120 OTU deubiquitinase 3 protein coding TCONS_00027978 553 299 UTR3 Trans
ENST00000395811 myosin phosphatase Rho interacting protein protein coding TCONS_00027978 556 319 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript TCONS_00027978 541 309 noncoding Trans
ENST00000588483 tropomyosin 4 protein coding TCONS_00027978 530 295 UTR5 Trans
TCONS_00017972 transcribed_unprocessed_pseudogene novel protein coding TCONS_00027978 560 307 UTR3 Trans

Sequence

>TCONS_00017972 (3741 nt)
CTGCCACTTTCCCTCAGGGAGACACTGCTTTGGAGAATACACCCAGTGCTCCCCTTACTTGAGCCAAGTAATAAAACTCCTATTGATCAAAATCTGCATT
CTCGTGGAGAGTCGTTTGTTGCTTGACAGGTGAATGAACGCTGTTTGTTTTTTTCGGATAACAAATATGAGGTATTAAACAAACAAACAAAAAACCCCAG
ACTTGAAGCTTTCCCATAATAACAACAAAGAGTTTGAGTAAGAATTCCACAGCTTGCCTTCATCTGTGGCAGACTTGCATGAATCATTTTCAAATAAAGA
TAATAACTCAGTTGGTCTTGTAGTCCAAACAAAATGTGCTACTTCAGGAACATTCACTTCCTATGTGGACTTTGCTGCTGAGTCAGTGTGAGACCTTGAA
CAAGTCTCTGTTTGTTTCGTACCATTCAGATTTCCTCGTCTGTAAACATTAAGTATCTACATTCACTAAAAGTAGTTCTGAATGAATGTTATTTAATGGT
GCCAATGATGTTGGAGGATACCTGTGCATCTCATGCTGTGGTTACAGCATCAATTGTGATGAATATAGGATACTGAGTCCCTCCTAGAAATGACTTCAGG
AACTTCACCCCCCAACTCCACAATCTGGGAATGGCAGACAGATTCAGCACCAGGAGAACATCACATAAAGGACAAGTGTGTATGTTTAAAAATGGCAAGT
TTCGGCCTGGCATGGTGGCTCACGTCTATAATCCCAGCACTTTGGGAGGCTGAGGTAGGTGAATCACGAAGTCAGAAGGTCGAGACAATCCTGACCAACA
TGGTGAAACCTTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCTCACACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGC
TTGAACCCAGGAGGCAGAGGCTGCAGTGAGCCGAGATTGCTCGCTGCACTCCAGCCTGGTGAGAGTGAGATTCCGTCTAGAAAAAAAAAAAAAAAAAAAG
ACAAGTTTCTGCTTGACTTATAAGACCTAATCCAATGTATTTCTAAATCAAATAACAGATAGATGAAGGCATTTTTAAAGCAATTATCTCAGGTTTTCAA
AACAGGTTTAAGAATGCGGTATCAAAGCCTGGACTAGGTTTCAATATTTCAGTATTTACAGATGACGTCTCAGAAAACAAAGAAGCCGTTATTGACAAGT
GCTTTCCAGGCCAAAGGCAAGTGCCAGGGAGTATAGTGACAGTGGATTTGCTGCCAAACTGATGATTTTTTCTTGTTTTCTTTTCAGCCCTATTTGTCCT
GGGCTCGGAATGTTGATGCAGCTATTTCTATTTGGTTATGGGTAAGGAAACGCTGCATTTATCACTGTGCCTACGTTTTCCTTCAAAGAGGCACGTGTAA
CTGTGTTCAATTGCAACTGAGAGCGTATTTTAAAAAGGAATTTGGCTTCAATGTCATTAACTGACCTTAAATAAATTGCTTGTGAGATTTTACAATATTA
AACTTAGCTCAGAAGAAATGCTGAAATTAGTAAATAATGATTTTTAAGAACTTATATATGTCATCTTTTAAAAAACCTGCTACTTCAAATAACTTCAAAG
TGAGGAAAAGCTTTTATCAGCTTTAGAGTTAAAATGCAGATGTTAATCGCAGGTTAGGATCTTGATAATTTCTAAAAAGACAAATGCAGCATTATTTGTA
AAAGTACATACAGTCGTGTACAGCATAACAACGTTTTGTTCAACGAAGGACCACATATACCATGGTGATCCCTCAAGATTATAATGGAGCTGGCAAACTC
CTGCCAACTCATCAGGCAGTCGCCACTGTAAGACTGTAGCAAAATGCATTAGTCCTGTGTTCGTGGTGATGCTTGTGTACACAGACTTACTGCACTGCCA
GTCATATAAAAATACAGCACATACAATAAGGTATAGCACATAATACCTGACAATGATAATAAATGATTAGGTTACTAGTTTAATATGCTATAGTTTTTAT
TGTTATTTTAGATTGTACTCTTTATGTTAATATATTATTAAAAGGTCAGTTGTGAAACAGCTTCAGGCACTTCCTTCAGGAGCTATCCAGAAAAAGGCAT
TGTCATCATAGGAGATGCCAGCTTAATGCGTGACGTTGCCCCTGAAGACCTTCCAATGGGGCAAGAAATGTAGGTGGAAGACAGTGATAATGATCCTGAC
CCCGTGTAGGTGTAGGCTATTGTGTGGTTTGTGTTTTAGTTTTTAACAAAAAAGTTTAAAAATTAAAAAATTAAACAATATAAGAGCGCTTATAGAATAC
GGATATAAAAAGAGACAATATTTTTGTTCAGCTATACAGTGGATTTGTGTTTTCAGTGGAGTGTAATTACAAGAGTCAGAAAGTTAAAACAAAGTGAAAA
GTTTATACTGTAAAAAAAGTTATAGTGGGCTAAGGTTAATTCATTATTGATGAGAGAAATTTTTTTGTACATTTTGTGTAGTCTAAGTGTACAGTGCTTG
TAAAGTCTGCAGTAGCATACAGTAATGTCCAAGGCTTTCACATCCACTCACCACTCGCTCACTGACCCAGCCAGAGCAACTTCCAGTCCTGAAAGCTGCA
TTCATGGTGAGTGTCCTACACAGGTGCATCATTTTTATCTTTTATACCATATTTTTACTGTATCTTTTCTATGTTTAGATATGTAAATACCATTGTGTTA
CAATTGCCTACAGTATTCAGGACAATAACAGGCTGTACATGTTTGTTGCCTAGCAGCAGTAGGTGTGTAGTAGGCTCTTCTGTCTAGTTTTGTGAAAGTT
CACACTATGATGTTTGCATAACAACAAAATCACCTATGGATGCGTTTCTCAGAATGTATCCCCATTGTTAAACGATGCATGGCTCTGTGTGTGTATGTGC
AGGACTCTGTGTGTGTGGTATATGCATACCACATACGCACACATCCACACTATACTATGCACTCTACATATATACAACTACATAGGCAAATATAAAGCTG
CATGTGCATAAATACACAAACAAACACACATACATATGTATAAAAGGTAATGTATTGATATTAATACTGACAATGTGTACTAAGCATATATTTATATACC
CTTAAATGTATATTATTTTAATACATACTATATTATGTTATATACTAATACACTTTTTTAAAACTGAAAGAAATCTCGTTGCCAATTTGTGTTTCTAAAT
ATGATGTCCATATTTTTTCTGATTTTATTACTATAGCTGTGATCACGTCATGTAACTTAATTTTGATGATGTTTCTCACAGTATAGTTTGAGGGTATCCA
GCCTCAGATTATCTGAGGATGTAGCTCAAGATTTCCTAATTTTGCAAACAGCAAGCTTCCCAGGAGATTCTTAGATTCCTGCTAACAAAAGGCGGAGACT
CACTGGACAGTTACTGAAGATAGACAGTAGGGGGCGGAAGGGCCCACGCTTCTTTGATATTGGTGGCTTTGGTTTTTCAGTGACGGGGGACACTTTGACT
TCAGGTATGTTCTGCATTTAGAATTTTCAAATGAACGTTTCTTGTCTGTTCCCTTCTTTTTTCTGCCTCCAAACATAATGTCTATCATTGTAAAAGTAAT
AAAAAATCACTGAACAAAATTTGGAAAATACCAAATGAATAACAATAGAAATAAAGTAAAAAAAGAACCACTCAAATTCCCATCATCAAGAAATAAACAT
TCTGATAATATTTAATTTTATTTTCCTATATATATTGTGTGT

Expression



Full and truncated open reading frames discovered in TCONS_00017972

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.