Detailed information on TCONS_00030995

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000512143 platelet-derived growth factor receptor,... protein coding TCONS_00030995 559 272 CDS_UTR Trans

Sequence

>TCONS_00030995 (2655 nt)
GGTCCTACCCGGAAGCGCGCCCGGGCTCCTGCAGGCGGGGCGCTGTGCGCGCCGCGATCCGGTACGTGGGCCTCCGGGCTGTCCCCTCTGGGGGCGGCGA<br />TCCTCCCTCCGGAGCCCCCCTTCAACCCTCCCGGAAGTGAGCATTTGCAGGACCAGGGATGCTGTGCTGCTCTCCCATGAGCCAGTCACCGAGTCGGTCT<br />GCTGCAGCCCTTTCTGAACCTCTGGCCGTCTGGATGCTCCACTGTGCTTGCCAAGATGAAGTGCGTCTTGGTGGCCACTGAGGGCGCAGAGGTCCTCTTC<br />TACTGGACAGATCAGGAGTTTGAAGAGAGTCTCCGGCTGAAGTTCGGGCAGTCAGAGAATGAGGAAGAAGAGGTTGGCCTCTTGATGCTCTGAGCTCGGT<br />GACCCCACCCCCACACCCCACCAGTCCTCTCTGGACTAAATGAGGGCAAGAAGAAGTCGAATTTTATCACGTAACAGAAGAACTTGGAGCCATCAGTTTC<br />TGTAACCTAAAAAGTTTAACAAGGCTGGGCGCGGTGGCTCACGCCTGTAATCACAACACTTTGGGAAGCCAAGGTGGGCCAGTTGCTTGAGCTCAGGGAT<br />TTGAGACCAGCCTGGGCAGCATGGCGAAACCCTGTCTCTACAAAAAAAATACAAAAATTAGCCAGGTGTGGTGGTGCGTGCCTATAGTCCCAGCTACTTG<br />GGAGGTTGAGGTGGGAGGATCACTTGAGTCCAGGTGGTAGAGGCTGCAGTGAGCCGAGACTGTGCCCATGCATTCCAACCTGGGCGACAGAGCAAAAAAA<br />AAAAAAAAAAGTTTAACGTAAGCTGAACACGTTAATTTTTTAATAGCTGTATTAAGGTATGATTAACATACCATAAATTGCACATATTTAAAGTGCATAA<br />TTTGATAAGCTTTGATATGTATATACCTATGATTCTATCACAATCAATAAAAGGAATATATCTACCACCTCAAACATTTGTAATCCCTTCTTTCCCATCC<br />CCATCGCATAGGAACTGCTGATCTGCTTTCTGTCATGATAGATTAGTTTGTATCATATGGCCTTATATAAATGGAGTCATACAGTATGTGCTTGGATTTA<br />GTTTGGTTTTGGTTTGACTGCTTTCACTCAGCATAATTATTTTGTGATTCATCTGTGTTGTGGCATGTATCAATCGTTCATTCCTTGTCATTGAGTAGTA<br />ATCTATTGTATCAGGATGCCACCATTTGTTCATTCATTTACTTGTTGATGGACATCTGTGTTATTTTCAGTTTTTGACTATTACAAATAAAGCAACTATG<br />AACATGCACGTACAAGTCTATGTATACATGGATGCTTTCATGTCCAAGGACAGATACTTAGGATAGACTGGCTAGGTCATGTAGGTGTATGTGTAACTTT<br />TTAATAAACTGCCAAACTTTTCCAAAGTGGTTGTGTAATTTTTGATTCCACCTGTAGTGTTTGAGAGTTCAGTTCCTCCATATCCTCACCAACACTATAG<br />TCCGTCTTTTTAATTTTAGCCATTCTAATAGATGTTCACTAGAATCTCACTGTGTTTTAAATTTCATTTCCTTAATGACTAATGCTTTTGAGCATCTTTT<br />CATGTGCTTATTTGCCATATCTTTTGCCCAGTTTTTATTTGAGTTGATTGTTTCTTCTTCTTATTCTTACTGAGTTTTGAGAGCTTCTAATATATTTTGG<br />ATGGAATCCTTTATCAGATACATGTTTTACAAATATTTTCTTTCAGTTTGTGGCTTGTGTTTGTATTCTCAATGGTATCTTTCAAAGAGCAGAAGTATTA<br />GAACTCGAGTTTATCCATTTTGCATTTATGGATTATGCTTTTAGTGTTATATCTAAGAAATCTTTGCCCAACTTACAAAGAGTTTTCTCTACATATTCTT<br />TTGAAAGTTTTATAGTTTTAGGTTTTATATCAGGTCTGATGATCTACTTTGAATTTTTGTGTGTGGTATGAGCTATGGATTGAAGATAATTTTTTTTTTG<br />CATGTGGACATCCAGTTCAACAGTTTAACATTACAACTCAGAAATACTTGTCATTTTCACTTACATAATTTCCACTCTACATTTTAAAGGAGTAATTTAT<br />TTTGAAAATGTTTTCCAGATTAATTTTGGGTTAAAAATATTTTTACTGGGGATGCAGTGGAAGGTGTTCTTACATTTCTGCAGCATGGGCTGATTGCCTC<br />TCTGTCCCTTTCTGCTCTAAGGGGTCTCATCATCCAGCCAATGAGTGAGCTGACTCCACCTCAGGGAGTCCATTTACCATCAACATCACTCGTGTTCTCA<br />TCACAGTCTTTAGGCAAACACAAGATATCAGAGATCATAGACATTCAAGTGGTTTTATTTAAGCTAACTGTTAGGCTTTTTTATTTTTTAACAGTCAATA<br />CATATAATATTTAAATTAAGAATTTTTAAATATTTCAGTTTTTAAACTACTGTTACAACTATGTCAACTTAAGAAGCAAACTATTTGGTGGCCTTTCTCT<br />TCCTCTTTATTGAAAACCTGGCAAAGGAACGAACTCCTGAATTTTCAGTTCCTAAAAATGAGTAGTGTAAAGGAAAGGTGGTCTTTAAAGTTTTTTTTTT<br />TTGTTAATGTGCAACACATTCTTTTCTCATCATATAAATAATGAGTTAATTGTAG

Expression



Full and truncated open reading frames discovered in TCONS_00030995

In silico ORF/peptide predictions
>peptide 1 (71 aa)
VLPGSAPGLLQAGRCARRDPVRGPPGCPLWGRRSSLRSPPSTLPEVSICRTRDAVLLSHEPVTESVCCSPF

>peptide 2 (59 aa)
GPTRKRARAPAGGALCAPRSGTWASGLSPLGAAILPPEPPFNPPGSEHLQDQGCCAALP

>peptide 3 (57 aa)
MSELTPPQGVHLPSTSLVFSSQSLGKHKISEIIDIQVVLFKLTVRLFYFLTVNTYNI


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT015902 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q92902|HPS1_HUMAN (Evalue: 4.0E-15)