Detailed information on TCONS_00033999

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000494969 colony stimulating factor 2 receptor, al... protein coding TCONS_00033999 520 279 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcript... nonsense mediated decay TCONS_00033999 516 288 CDS_UTR Trans
TCONS_00011154 SprT-like N-terminal domain novel protein coding TCONS_00033999 504 298 UTR3 Trans
TCONS_00053512 anoctamin 4 novel protein coding TCONS_00033999 521 293 UTR3 Trans
TCONS_00150627 UDP-glucuronate decarboxylase 1 novel protein coding TCONS_00033999 604 287 UTR5 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding TCONS_00033999 533 290 UTR3 Trans

Sequence

>TCONS_00033999 (2184 nt)
GAGTACCGGCTAGTATCGCGAGATCAGGAAGGTGGCCGAGTGTGTCGCCGCGGCCATCAGGCACTTCTCCTTCCTGCCCTTGTATGAAGAAGGATGTGTT<br />TGCTTCCCCTTGTGCCATGATTGTAAATTTCCTGAGGCCTCCTCAGCCCTGCAGAACTGGGGTTATAGCCATGTGACTGATCTTCGTCCAAGAATATGTA<br />AAGAAAAAGTGTTGAGTTGGCTTTTAGGGCTAGAGCAATGTATCTTAGGCTCACTTAAGGAAGCTGTAGAGATGAGCCCAAGGAGGGAAACCAGAAGAGC<br />CCCCCAGGCTCACCAGTTGTTTGTTGGCTCCCTACAAACATGTCATTCAAGTGGCTAATCTTACAACAGCACAAATTCATCTAACCAGGTGAGTTTCTTC<br />GAGTCACTTCAAATAATTATTTCTTGAGCATCTACTTCATGCCAATGGTGTGCTAGATTCTATAAGAAAATAAATGTGAATTACTCACAGATAAAAATAA<br />ATAACAATCAGGCTGCGTACAGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCGAGTGGGGTGTATCACTGGAGGTCGGGAGTTCAAGACCAGCT<br />TGACCAACATGGTGAAACCCCATCGCTACTGAAAATGCAAAAATTAAGTGGGCATGGTGGCACACACTTGCAATCCCAGCTACTCAGGAGGCTAAGGCAT<br />GAGAAACGCTTGAATCCGGGAGGCAGAGGTTGCAATGAGCCAAGATCGCACCATTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAATAAATG<br />AATAAATAAATAACAATCAAGAGAATAGAATCAATATAGCCCAGTGGACAAGACCATGGATTATGGAGCCAGACTAGCTACTTACTAGCAGAATGATTAA<br />TTTTGAGCAAGACCCTTAAGCTCTTTGGGAGTCAGGTTCTTCATGTATAAAGTGTGGCTTACTTAATAGTTTCTGTGAAGTTGTGAATTTAACAAATATC<br />AACCTCCTTGCCAAAGCTAACTAATTTGCTAATCACTGATTTTGCAAAGCGTGTTGTGGAGATGTGGCTGGACAGGTTTGCCATCAGAGTCGATATACCG<br />TTGTATTAAAAACAAGATAAAAAAGCTGCCAAGTTCTTTCGTGAGTGGTTGGTTAGTCTGAAATCTTTGCAAGATGCTGATGCTCAAGCTGTTGACCTAC<br />TCATTGCCTACTTTAACAACTGTCAGAGAAACATGATGTGGGGTAAGGAGGTGCTTTTTAAAAATCATTCATAGACTTCTGTAAAATGCAAGATAAAGTT<br />ATTTTAACAGTGGAAAAAAAACAAATATCAGGTGCTTTCAGGGTCCAACATATAATAAGTGCTATAGTTAACAGTTATTTTACATTTATTATCTCCCTGG<br />GTCTCACCCTAAGCCTATGAAGTAGGTAGCATTCACCTTTTATAGAGGAGTAAACTGAAGTTAAGAGGTCAAGTAGCCTGCTTAGGTCACCCTGCAACCA<br />GCAACAGAGCCAAAAGTCAAGCCCAGGTCTGTCTGACAGCCAGGCCTGGCCTCATAAACACTGTTCTGTGTGCTGTCCTCAGACACAAACCTTGCTCTCC<br />AGAAAGTCATATTCTAGAAGCCTTATTGCAGGGCTGAAAACACTAAGTGCCACTAGAGAGATAGAAATAATGTGGATGGGGATTTCACAACAGGGCCTGT<br />GGGAAATTGTTTCCAGCTTAGAAAATCAGAGGGAGTTTTAAGGAAGAAATGGAATTTGAGTCTTGAATGATTTATTTGTGCAGAAGCAGGAGTGAGAAAG<br />GACAAACAAAAAACCAGGGATGAGAGGGGTGAGGTATAGTTTGGAAACAGGCAATAGATGGTTCAATAAAAGTGGACCCTGGGATATGTGCAGGAGAGCA<br />GGGAAAGGTGAGGCCTGCAACCCTCCCTAGGTGAAGTCAGATCACAAGGGGCCTCAAGTACCAAGCTAAAGAGTGTGCATCTAAAATTGAAGGTCCTTAA<br />ATAGCTTTTTAAAAGACAAATGGGCGAAAAGACCAAATGGGAAAAAGGAAAAAATAAGACCTAAGACTTTGAGACATGGTGATTATTTGTCAGTAAGAAT<br />TGGCGGAATATGGGCTTATTAACCTAGTTAGTTCTCTTCTGAAAAAGCCACATAGGTTTTACAGAAAAAAAAGTTGATTTTGCA

Expression



Full and truncated open reading frames discovered in TCONS_00033999

In silico ORF/peptide predictions
>peptide 1 (57 aa)
VPASIARSGRWPSVSPRPSGTSPSCPCMKKDVFASPCAMIVNFLRPPQPCRTGVIAM


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT018495 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q86U02|CN165_HUMAN (Evalue: 3.0E-23)