Detailed information on TCONS_00033999

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00033999 520 279 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay TCONS_00033999 516 288 CDS_UTR Trans
TCONS_00011154 SprT-like N-terminal domain novel protein coding TCONS_00033999 504 298 UTR3 Trans
TCONS_00053512 anoctamin 4 novel protein coding TCONS_00033999 521 293 UTR3 Trans
TCONS_00150627 UDP-glucuronate decarboxylase 1 novel protein coding TCONS_00033999 604 287 UTR5 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding TCONS_00033999 533 290 UTR3 Trans

Sequence

>TCONS_00251973 (2183 nt)
GAGTACCGGCTAGTATCGCGAGATCAGGAAGGTGGCCGAGTGTGTCGCCGCGGCCATCAGGCACTTCTCCTTCCTGCCCTTGTATGAAGAAGGATGTGTT
TGCTTCCCCTTGTGCCATGATTGTAAATTTCCTGAGGCCTCCTCAGCCCTGCAGAACTGGGGTTATAGCCATGTGACTGATCTTCGTCCAAGAATATGTA
AAGAAAAAGTGTTGAGTTGGCTTTTAGGGCTAGAGCAATGTATCTTAGGCTCACTTAAGGAAGCTGTAGAGATGAGCCCAAGGAGGGAAACCAGAAGAGC
CCCCCAGGCTCACCAGTTGTTTGTTGGCTCCCTACAAACATGTCATTCAAGTGGCTAATCTTACAACAGCACAAATTCATCTAACCAGGTGAGTTTCTTC
GAGTCACTTCAAATAATTATTTCTTGAGCATCTACTTCATGCCAATGGTGTGCTAGATTCTATAAGAAAATAAATGTGAATTACTCACAGATAAAAATAA
ATAACAATCAGGCTGCGTACAGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCGAGTGGGGTGTATCACTGGAGGTCGGGAGTTCAAGACCAGCT
TGACCAACATGGTGAAACCCCATCGCTACTGAAAATGCAAAAATTAAGTGGGCATGGTGGCACACACTTGCAATCCCAGCTACTCAGGAGGCTAAGGCAT
GAGAAACGCTTGAATCCGGGAGGCAGAGGTTGCAATGAGCCAAGATCGCACCATTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAATAAATG
AATAAATAAATAACAATCAAGAGAATAGAATCAATATAGCCCAGTGGACAAGACCATGGATTATGGAGCCAGACTAGCTACTTACTAGCAGAATGATTAA
TTTTGAGCAAGACCCTTAAGCTCTTTGGGAGTCAGGTTCTTCATGTATAAAGTGTGGCTTACTTAATAGTTTCTGTGAAGTTGTGAATTTAACAAATATC
AACCTCCTTGCCAAAGCTAACTAATTTGCTAATCACTGATTTTGCAAAGCGTGTTGTGGAGATGTGGCTGGACAGGTTTGCCATCAGAGTCGATATACCG
TTGTATTAAAAACAAGATAAAAAAGCTGCCAAGTTCTTTCGTGAGTGGTTGGTTAGTCTGAAATCTTTGCAAGATGCTGATGCTCAAGCTGTTGACCTAC
TCATTGCCTACTTTAACAACTGTCAGAGAAACATGATGTGGGGTAAGGAGGTGCTTTTTAAAAATCATTCATAGACTTCTGTAAAATGCAAGATAAAGTT
ATTTTAACAGTGGAAAAAAAACAAATATCAGGTGCTTTCAGGGTCCAACATATAATAAGTGCTATAGTTAACAGTTATTTTACATTTATTATCTCCCTGG
GTCTCACCCTAAGCCTATGAAGTAGGTAGCATTCACCTTTTATAGAGGAGTAAACTGAAGTTAAGAGGTCAAGTAGCCTGCTTAGGTCACCCTGCAACCA
GCAACAGAGCCAAAAGTCAAGCCCAGGTCTGTCTGACAGCCAGGCCTGGCCTCATAAACACTGTTCTGTGTGCTGTCCTCAGACACAAACCTTGCTCTCC
AGAAAGTCATATTCTAGAAGCCTTATTGCAGGGCTGAAAACACTAAGTGCCACTAGAGAGATAGAAATAATGTGGATGGGGATTTCACAACAGGGCCTGT
GGGAAATTGTTTCCAGCTTAGAAAATCAGAGGGAGTTTTAAGGAAGAAATGGAATTTGAGTCTTGAATGATTTATTTGTGCAGAAGCAGGAGTGAGAAAG
GACAAACAAAAAACCAGGGATGAGAGGGGTGAGGTATAGTTTGGAAACAGGCAATAGATGGTTCAATAAAAGTGGACCCTGGGATATGTGCAGGAGAGCA
GGGAAAGGTGAGGCCTGCAACCCTCCCTAGGTGAAGTCAGATCACAAGGGGCCTCAAGTACCAAGCTAAAGAGTGTGCATCTAAAATTGAAGGTCCTTAA
ATAGCTTTTTAAAAGACAAATGGGCGAAAAGACCAAATGGGAAAAAGGAAAAAATAAGACCTAAGACTTTGAGACATGGTGATTATTTGTCAGTAAGAAT
TGGCGGAATATGGGCTTATTAACCTAGTTAGTTCTCTTCTGAAAAAGCCACATAGGTTTTACAGAAAAAAAAGTTGATTTTGCA

Expression



Full and truncated open reading frames discovered in TCONS_00251973

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.