Detailed information on TCONS_00034094

lncRNA-RNA interactions

Number of interactions: 22

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000378004 Rho GTPase activating protein 26 protein coding TCONS_00034094 544 237 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00034094 644 241 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00034094 616 243 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034094 626 242 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034094 626 242 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034094 626 242 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034094 626 242 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034094 626 242 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034094 626 242 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034094 626 242 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00034094 594 242 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00034094 585 243 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding TCONS_00034094 2157 1038 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding TCONS_00034094 2157 1038 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding TCONS_00034094 621 234 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding TCONS_00034094 621 234 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding TCONS_00034094 621 234 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding TCONS_00034094 598 324 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding TCONS_00034094 2230 1024 CDS_UTR Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00034094 621 242 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00034094 621 242 UTR3 Trans
TCONS_00227594 GLI family zinc finger 3 novel protein coding TCONS_00034094 544 211 UTR3 Trans

Sequence

>TCONS_00227594 (6478 nt)
TGTTGATACTATCTGAAAAAAGACCAAGAGTGTAAATGAATAAATGATACTTAAAACTTTGAACTATTTTCTGAGAGGATAAGTCTAATGAATTATGTCT
GTTGAGTGTCACAGAAACTAAACAGTAAATTCAATAATCTCTGATTTAATTTATTATATTTTCACCATTTAACCTCCTGCAGGCTCCCTAATGTCTATTC
AGATCTATATTAAATTAAGCACCAATGCTAATGAAGGGCAATAAACGTGGCTGTCAGTGGATTTTTCTTTCATTAAGCACATTATCCTCTTACTGAGCTG
TAAATGCGTAAACATTAGTTTTGTTAAACCATGCAAAAAAGACAGGATGAAAATCATTTTTTAATTGCACCCCTTAAGCAATTCAGTATGTGTGGGGGTA
GGGTATTTTTTAGATCTTTTTTACCTTTAATTTTTTTGAATGGATTTAAAAAGGGCTCTCCCGTTGAAACATAAACATCGGCTTCATGGGGTATATCTTC
AGGTTCGAGGGCTTCCTTGCCGTCTGCCAAGAACACTCGTCTTGCGGCCATGTTCAGATTCAGCTTTTCTGTGCACTCCTCCAGCAGCTAGAAGAAAGCA
AGAGGTAAGTCAAAGTGATTTACTACAAAGAAAGTAATATATTTCCCTCAAAACAAAAGGTTCTAATGATCAAAATAGAAACCCAATTGAGTCACTTGCC
AATACAGTTATTTTCTAGCAGTTGAAAATATAGAAATAAAAGGTAAGTCACAGCATGAAGCATATCTAATTATTGACTAAATTTAACATTTAAATGATCT
GTCATTTTAATAACTCTACAAGGTATTGTAGAGTTTCATCTGTTTAAATACACTGTTTATATATTGAATTTTTTTAAAAAAGGAGAGGAGTGAAATTCCT
ATGAAATCTACGTATATATAAGCAATCGGTAGATTCAGATTCTCAAAAAGAAAATATTAACAATAATTTTCTCATTTTTTATATTATAAAGAGAGTAAGG
GAAAAAAAATAAAGCACAGAAAACTTTGGAACACTAGTTACCAAGGTGATGGTTGGTACAGTAACTCTGGCAAAGACTGTTCTAGATCCATTTTTGTAAG
CTGTTACTTTAATCACTCTTGGTTGAAGTTTGTGTCTTTGAGACAATTTCTGCCAATTCCGGGCTGACTGAAATTTTAAAGAAGAGAACTCTGCAACCCT
GAAGAAAAAGAAAAACAGAAAAATTGATGCATGCTAATTAGTGAAAGCTTTTAAATAAATATTATCCTGGATTTTTTTAAACAGATATAAGCACTAAAGA
TTGTTCCTATGTATATAAGTATACCTAACAAAACTTTTTATAGGATAAGATTGTTGTTACAGAGTAACACTCTCACTATTTAAATATTCAAAAAAATTTA
AAACACAGTGTTTGCCAAAACTGCTCATATAAAACATATATATCAGAATAAATGATTCTTATCACTTTACTTATAAAACACAACAGTCCTTTTAAAATAT
ATATATATTATATGCAACTAAAAATTATATATATGAGATATGTTCTGATAGCAAAAAATAGTAATATGGTCTTAATATCATGAAACAGCAAATGGCTAAG
ATTCTATCCAAGTTTTCAGGTTTATCAAAGTTCTTTAACTTTTTTAAAAAATGTTTAAAATTCAAAAATATTTGATTTTAAAATTTTGATTCCAAGGTTA
ATTGTATTGCTCTCATTTCAAACTGTTCGGAAGTGGTAACGGTGAAGATTTCTAAGTTTTGTCTTCAGGCAAAACTAATTTTGATATTTATGATTTTTCT
CAGCAAAAGTATGTGGTAAACTGACTAACGTCAAATTTTCTTCATAATTCTCTAACTAACCAAGTTAATTTGTAATGCCACAGAAGAAGAGTAAATATTT
TAAAATAAAAATGTCACACAAATTAAAAACACAACATATCCACATATTCAAACATTTGAAAATAGTGGGGTATTAGTTTCTTGGTTTGATTTTTGTTTTT
ACTAATATTTTCTTCTGTCTATGAACTCTCATGTTAACAGTTTATGATAACAATTTGATGTGAAAACATATTTACAAAATTGTTTTATAATAATTTCATT
CAATTCAATTCTGTTTCAAACTATTGGTTAAATATCAAAAGAAAGCATTTTTATTTTTAAATAAGTTCGTGTGAGCAAAGATATTTCATGATCCTAGCCT
GATTCTGCTTCAAATATTCTTTTCAGAGTTTCTGATTGCCCGGGTTGAAGTGTATCTCATATTTCCCACAGTGTAATTAACAACATTCTACTCTGGTGCT
TTCAAAGAAAAAAACAAAAACAAAAACAAAACCCGAGAGATGTGTTACATTTTAATGTCTGAGATAGTCAATTGAAACATTATAAACTCTGCTCAAAGGA
AAGAACTTCAACAATAGGTTAAAAAGAACAGAGAACAGCTTTGATTACCTCAGTTGACCCACTGGAGCACTGACAGGCCTTCAGACTCAGATTGGAAACT
ACAGCAATGGCCCTCTGTCTCTCAGGCCTTTGAACCACACCACTGGTTTTCCTGGGTCTCCAGCTTGTAGATGACTAATCATGAGACTTCACAGCCTCCA
TAATCGGGTGAGCCAACACCTTATCCTATGTACATATATAATATATAAACAAAATATGCAGTATATAGGCTGGACATGGGTGGCTTATGCCTGTAATCCC
AGCACTTTGGGAGGCTGAGGTGGGAGGATTGCTGAAACAGGGAGTTCAAGATCAGCCTGGGCAACAGAGCAAGACCTCGTCTCTAAAAAAAATTACAAAA
AATTTTAAAGTCAAATAAAATATTTATTTTTAAAGTATAAATTTAAAAATAAAATAAAATATTAAAACCTACTGGTTCTGTTTCTCTGGAGAACCCTAAT
ATATTTGCTATTTGTTTTCTGTTTTACCTATCTGTTCTATGCTCTTTTTCACTTGTTGTCTTTGTTTAGATTAAAAAATAATTTTCCATTATTTAATTTC
CCTTTCTATTAGGTTATAAGTTACACATTTGCTTAACTTTATTTTTACTGGTTATGCTAGCCATTACAATATGAATCCTTGTCCTATTAAAGTTTAACAT
GATTACTTACTCATTACTTTCCAGACAATGCACAAACCTTAAAACACATTATATCTGTTTATTGTTGCTTCCTAGGGCTGATGAACAATACCTTTGTTCC
CATTTTCATGAATAGGTGCATCTGTCTTTCAGGGGTCCTAGCCTTATGCAGGGAGCTCAGCTCCAGAATATTCCTTGCTCGAGCTTGAGGTTTTGCATCC
TGTCCTTCCTGTGCTTCTTGAGAACTATTAATTATATACATTTTACATTATAATTTATTTTAAGATCTACATTTTTAAGATCTACATTAAGATCTACACA
GATATCTTTTCTAAAATTCAGTAAGTTGTATGATAGTTTTGCTGAATTTTGTCTTTCCCAACTGATACTAAATTTAATTTAGTGCTGTGGTTATTTTTAC
TCATTGGCCCATATGTAGTCTCCGTGAACAGGTATAGTTCCTTTGCATGTGAATTCCTAAACCAGTTGTTCTAGAAAATGGTCTTTTGTCCAAAGACAAA
AACAAAAACAAAAAACAAAACACAACAAAACCCTCACCTTCTCCTCACCTACTGTTGAGATTTTCTATAACATTCTGGAACCTGGGCTAATTTTATAACA
TAGATTTTCTTTTTAATATTTCTGACAGATTGATCATCTTGTCCTGGAAGTGTATATGTCTCTACTGCAAATTTTTCATTACATCTGTAAATAACTCACA
TATAAACAGACAAAGTAGTTCCTTTTTCAGTATGATTTCTATGCCAACCCCACATGAAGGAATGTGCTTCCTCCCTGTGCATCCACACCTGCCCTGGATG
ATTTGATAGCCAGAATTACTATATCTCATTGGTTATTTCCTATCATATAAAATGCTAGCCTTTAATTTCTGTCAAACATTTCAATTTATCATTGCATTAT
TTAATCTTTTGCCATGATATAGAAGCATTCTTTTTAAGCCTGAAGTTTAAATTCCACTAAAATGGATTAATACAAGAACATTAATCATATTACCTCATAA
GTACACTTCCTTTAAAAATCTATTTATATATCTAACCTACCTACCTACCATTTACTTCTCCATCCATTATTAGTTGTACATCTATTGAAGCACAACAAAC
TACCACAAAATTAGTGGCTTAAAATAACATCTATTTATGAGCACACTATTTCTGTAGGTCCAGAGTCTGGGCAAAGCTTAGCTGGATCCTCTGTTCAGAA
TCTCACAGAGCTGAAATCAAGGTGTCAGCTGGGGCTGCAGTCTCATCTGATGCTCAGGGTCCTCTTCCAAGCTCATTCAGGTTGGTGCCAGAATTCAGTT
CTTGACTGCTATAGAACTTATACTGACTATCATCTTTTTTGAGGCCAGGAATAGCTTAGCTTTCTAAGTTATCAATCTATGATCGCTATCATTTAAGAGT
TTATCTGATTAGGTCAGGCACACCCAGAATAATCTCCCTTTTAATTAACTTAAAGATAACTGATTATGTCACTTAACGACATCTGCAGAAATCTTTTCTC
TTTTGCCATATAATGAAACTTAATCATGATGGTGATATCTCATTATATTTACAGGTCCTAAAGATCTTAAACATGGTGGAATTTACAACCCTCTTGATAT
TTCAGGGTAGCATTTAATTATGCTTACTCTCTGAGATTTTCATTAAATCTAGTTTACAATTTTTGCTTCACAAAGCAACAACTAAGTAATCTTTAAGGTC
TAAAAATATAAGAAAATATTCTTAGGAAGGAGTACAGAAAAAAACAGGTAAGTAGACCATAAGAATTAAGGAGATGACTACAGATTTGACAAGAACAATT
TTTCTCATTTCCTCTCCTTAATGGCATTAGTAAACCTTAGTGACTTTTTATAGCAATTTGAAGAAAACTCCTAGTAAAATCATACTTCTTGGTCTCACAT
TCAACAATTTCTACCAAGTGGTGCTGCTCATTACTCCCCTGTAATATCCCTCAGCTATAACTACACCACATTGCCTTCCATAGTTCCTATTTGCATACCC
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTACAGTGGTACAGTCTCGGCTCACTGGTACAGTCTCG
GCTCACTGCAAGCTCCACCTCCCAGGTTCACGCCATCCTCCTGCCTCAGCCTCCCGAGTAGCTGAGACTACAGGTGCACGCTGCCATGCCCGGCTAATTT
TTTGTATTTTTAGTAGAGAGGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCGCCCACCTGGGCCTCCCAAATTGCTGGG
ATTACAGGCGTGAGCCACCATGCCCGGCCATCTGCATACCTTTTTTTTTTTTTTTTTTTTTATTAAACTCTAAGTTTTAGGGTACATGTGCATATTGTGC
AGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCTCCCCT
CCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGT
TTGGTTTTTTGTTCTTGCAATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCAT
AGTATTCCACGGTGTATATGTGCCACATTTTCTTAATCCATCTATCATTGTTGGACATTTCGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCA
ATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTT
CTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCT
CCAGCACCTGTTGTTTCCTGACTTTGTAATGATTGCCATTCTAACTGGTGTGAAATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGT
GATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTG
TTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTG
CCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGGCT

Expression



Full and truncated open reading frames discovered in TCONS_00227594

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.