Detailed information on TCONS_00034095

lncRNA-RNA interactions

Number of interactions: 22

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000378004 Rho GTPase activating protein 26 protein coding TCONS_00034095 544 237 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00034095 644 241 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00034095 616 243 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034095 626 242 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034095 626 242 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034095 626 242 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034095 626 242 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034095 626 242 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034095 626 242 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00034095 626 242 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00034095 594 242 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00034095 585 243 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding TCONS_00034095 2157 1038 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding TCONS_00034095 2157 1038 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding TCONS_00034095 621 234 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding TCONS_00034095 621 234 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding TCONS_00034095 621 234 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding TCONS_00034095 598 324 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding TCONS_00034095 2230 1024 CDS_UTR Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00034095 621 242 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00034095 621 242 UTR3 Trans
TCONS_00227594 GLI family zinc finger 3 novel protein coding TCONS_00034095 544 211 UTR3 Trans

Sequence

>TCONS_00227594 (2956 nt)
TGTTGATACTATCTGAAAAAAGACCAAGAGTGTAAATGAATAAATGATACTTAAAACTTTGAACTATTTTCTGAGAGGATAAGTCTAATGAATTATGTCT
GTTGAGTGTCACAGAAACTAAACAGTAAATTCAATAATCTCTGATTTAATTTATTATATTTTCACCATTTAACCTCCTGCAGGCTCCCTAATGTCTATTC
AGATCTATATTAAATTAAGCACCAATGCTAATGAAGGGCAATAAACGTGGCTGTCAGTGGATTTTTCTTTCATTAAGCACATTATCCTCTTACTGAGCTG
TAAATGCGTAAACATTAGTTTTGTTAAACCATGCAAAAAAGACAGGATGAAAATCATTTTTTAATTGCACCCCTTAAGCAATTCAGTATGTGTGGGGGTA
GGGTATTTTTTAGATCTTTTTTACCTTTAATTTTTTTGAATGGATTTAAAAAGGGCTCTCCCGTTGAAACATAAACATCGGCTTCATGGGGTATATCTTC
AGGTTCGAGGGCTTCCTTGCCGTCTGCCAAGAACACTCGTCTTGCGGCCATGTTCAGATTCAGCTTTTCTGTGCACTCCTCCAGCAGCTAGAAGAAAGCA
AGAGGCCTTCAGACTCAGATTGGAAACTACAGCAATGGCCCTCTGTCTCTCAGGCCTTTGAACCACACCACTGGTTTTCCTGGGTCTCCAGCTTGTAGAT
GACTAATCATGAGACTTCACAGCCTCCATAATCGGGTCCAGAGTCTGGGCAAAGCTTAGCTGGATCCTCTGTTCAGAATCTCACAGAGCTGAAATCAAGG
TGTCAGCTGGGGCTGCAGTCTCATCTGATGCTCAGGGTCCTCTTCCAAGCTCATTCAGGTTGGTGCCAGAATTCAGTTCTTGACTGCTATAGAACTTATA
CTGACTATCATCTTTTTTGAGGCCAGGAATAGCTTAGCTTTCTAAGTTATCAATCTATGATCGCTATCATTTAAGAGTTTATCTGATTAGGTCAGGCACA
CCCAGAATAATCTCCCTTTTAATTAACTTAAAGATAACTGATTATGTCACTTAACGACATCTGCAGAAATCTTTTCTCTTTTGCCATATAATGAAACTTA
ATCATGATGGTGATATCTCATTATATTTACAGGTCCTAAAGATCTTAAACATGGTGGAATTTACAACCCTCTTGATATTTCAGGGTAGCATTTAATTATG
CTTACTCTCTGAGATTTTCATTAAATCTAGTTTACAATTTTTGCTTCACAAAGCAACAACTAAGTAATCTTTAAGGTCTAAAAATATAAGAAAATATTCT
TAGGAAGGAGTACAGAAAAAAACAGGTAAGTAGACCATAAGAATTAAGGAGATGACTACAGATTTGACAAGAACAATTTTTCTCATTTCCTCTCCTTAAT
GGCATTAGTAAACCTTAGTGACTTTTTATAGCAATTTGAAGAAAACTCCTAGTAAAATCATACTTCTTGGTCTCACATTCAACAATTTCTACCAAGTGGT
GCTGCTCATTACTCCCCTGTAATATCCCTCAGCTATAACTACACCACATTGCCTTCCATAGTTCCTATTTGCATACCCTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTACAGTGGTACAGTCTCGGCTCACTGGTACAGTCTCGGCTCACTGCAAGCTCCACCTCC
CAGGTTCACGCCATCCTCCTGCCTCAGCCTCCCGAGTAGCTGAGACTACAGGTGCACGCTGCCATGCCCGGCTAATTTTTTGTATTTTTAGTAGAGAGGG
GGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCGCCCACCTGGGCCTCCCAAATTGCTGGGATTACAGGCGTGAGCCACCATG
CCCGGCCATCTGCATACCTTTTTTTTTTTTTTTTTTTTTATTAAACTCTAAGTTTTAGGGTACATGTGCATATTGTGCAGGTTAGTTACATATGTATACA
TGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCTCCCCTCCCCCGACCCCACCACAGTCCC
CAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCAATA
GTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCACGGTGTATATGTG
CCACATTTTCTTAATCCATCTATCATTGTTGGACATTTCGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGT
CTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCA
CACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGAC
TTTGTAATGATTGCCATTCTAACTGGTGTGAAATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGT
GTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTT
GAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTT
TCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGGCT

Expression



Full and truncated open reading frames discovered in TCONS_00227594

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.