Detailed information on TCONS_00037086

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00107864 transient receptor potential cation chan... novel protein coding TCONS_00037086 705 359 UTR3 Trans
TCONS_00107867 transient receptor potential cation chan... novel protein coding TCONS_00037086 705 359 UTR3 Trans

Sequence

>TCONS_00037086 (7902 nt)
TTGTGATATTTCTGCTAATTTGGCATCCCTTAGCTTAGGCAAGATAGGCAGCGCCTTCTTATACATGATTTCAAAGGGTGAGAACTTAGCCTGGTAAGGG<br />GTGCACCTTACTTTAAGTAGGGCTAAAGGAAGGAGACTTACTTAATTTACACCGGTTTTTAAGATTAATTTTGTAGGAGTGTTTTTTAGGGTGTGGTTCA<br />CGCTTTCTACTTGCCTGGAACTCTGGGGCTGATAGAGCTCCAGGCAATAGAGGCACAATGGAGCTTCTATTGAACGTTTAACGCCTTACTGACTGACTGA<br />GCTATAGGCGAGGTGAAGGCTGCTCTATTATCAGACTTTATGGCAGCAGGCAGCCTATATTGAGGGATGATTTCATTGCGTAAAAACTTAACTACTGTGT<br />TGGTGGTTTCGTTTTCGGTAGCAAATGCCTTAGTCTATCTGGAGAAGGTGTCTACTAGTACTAGAAGGTATTTGTACTTAGCCTGGTGTGGTTTGACTTC<br />TGTAAAGTCAATTTCTTACTTTTTTCTCGGCGAGTTTTTTCAGAGACAGTGGCCTGGGCTGGGTTTAGGACTTTGTTTGGCATTTACTTGGGTGCAGGTT<br />GTGCACTGGAGAGCGGCTTAATCTGATAGGCTTTGAAGACGGGGGATCTTAAAATGGCTCCGGAGGAGCTGAGGTAGCTTTGCTCTTTTTAAGTGGGTGG<br />TAGACTGCAGGTGACTGATTAAAGTTTCTTTAAGAGTTCAGGATATGAAGATTCTAGAGTCAGGAAGAATCTACTAACTTTCCTGATTTTTATTGGCTCT<br />GAGATCTGAAGCCAGTTTTTTTGTTGTTGTTGTTGTTGAGTATACGGGATTGTCAGGCAGATCTGGCTGAGGAAAGGAGACTGTGGGCAGCAAGTTTAGA<br />GGCGTGACTGAAAGTTGCGCTGCGACCTGAGCTGCTGAATCAGCTTTCTAGTTACTATGGGCAAAGCCGTGTTTTCTTTTTGATGTCCTTTGCAGTGGAT<br />CACAGCTATCTGCTGAGACAGACAAGGGGAGGGGCTCCTGTGATGGGATCAGTCAGATGCCTGCCTGGCCGCTCCCCCTGAGGGGACTTGGGCTCCTCTT<br />AACATTGGCAGGCTGGTATAAACTTCCGGCTCAGATCAAGCTATGCCTGATGCTGCCTTAAGCCTTATGAGGTCGCCACGGAACCGCAGGTGAGGGTCTA<br />CTTGAACTCCGTAGCTTTAGCCGTGGAGCTACAAACTGGAGGACAAGCGCAAGCCCTTGTCCTCACTCATTCATTATTCACACAGAGTATATAACAGTTT<br />TTTTTTTTTTCTTTCTTGGAGATTCTTCAAGAAACTTGAACAAGAGAAAGATGAGAGATAGAAAGAGAGAGAGAGTGACCGGTCTGCCAGAAACCAGGAC<br />TCAGTCCTCCAGCATCCTGGGATGTGGACTGAGTCAAGGGAGGGCCGCTGTCAGAGCCACTTCCCTCCTAGAAAGAGACACAGAGGTGCCTAACAGAAAA<br />CCAGGGCTCTACCTTCTAGCGTCCTAGAGAAACAGGCAGAGTCAAAAGAGGGACACCCTCATCAGGGCCGCTTCCCTCTTACTAGAACTGAAGTCAAATC<br />TGACCTACCTGACCTCAGGGTCAGAAGTCGAGGACTCAGATGTGGAATTTTTATGGACACCCACACGGTAGTCGATCCGCTCTCCTCTGAAAGACGGTCA<br />CCTTTCGGGGACCTAAAAATTTTTTTTCAGGTGGCACCCCCCCTACAAGCCGGCCGGCCTTCTGGGGGAGCCCAGAGCGAGCCCGGCTCTTGCCTGGTGG<br />CGTTTCTTGCTGGGGCCTCCGAATGTTGTACTTGAGCGAGTTAGAGAAAATGTCACACTTTGACATGAATTAAGAGTCTGTTTATTTAGCTGACGGCCAA<br />GAAATGGCTAACTCTTAAAGTTCTCTTGGCCCCGAAGAAAGGGCTAGATTTTCTTTTATACTTCAGTTTAGACAGGGGAAACGGGTCTAGTTAAAAGAAT<br />TTTACAGAAGTAAAGTAGGCAAAAAAGTTAAAAGGATAAATTGTTACAGGAAAGTAAACAGTTCTAGGTGTAAGGGCTTTAAGACTATTACAAAGTGATA<br />GACGTGGGGCTTTAGGCATTATCAATCGGACAAATTCCTAGGAACTGCGGATATTGCTCGCCACAGTATCTTATGAGTTAATTGCATTCTTAGATGTGCT<br />AAGAGTCAGCTTGCACAAGTTAAGTCCTTGAGGAAGGGGCTGTCAGTGAAAAGGCCAAGATAAAATCTATCTAGCTCTCTTAGCTAAAAGAAAGTCAATT<br />CAGGTAGAAACAAGGCTAAGTGATTAAAAGAAAAGGAAAGTCTAAGAACAAAGTTAATAAAAACAAGGTTAGGCATTACAGATGGGGTCATCCTTATATT<br />CAGCACAGCGTTTGTCCTGAAACTTCAATGGAGTGCTCCTAGTTTGATAACTTGGACCATGCCAAATAAATTGAATTTCTCTTTCTTAACAACAGATGTT<br />TGAATACAGCCCCGTGACCCTTTCTGCTCCTTCCTGCCTTCCTCCTCTCCTCTTCCTTCCCTTCCTTTTCAAGAGCAGGGTTTGCAAACTTTTTCTTGAA<br />AGCATCAGATAGTAAATATTTTCGAATTCGTGGGCCATACAGTCTCTTATAGTAGTTGCTCAACTCTGCCACCCATAGCATGAAAGCAGCTGATATAGTT<br />GAATATGAGTCCCCACCCAAAACTCATGTTGCAATCCCCAGTGTTAGAGGTGGGGTCTGGTGGGAAGAGATTGGATCATGGGGGTGGATTTCTCATGAAT<br />GATTTAGCCTCATCCCTTTGGTCCTGTCCTTGCAATAGTGAGTGAGTTCTTGCAAGATCTGGTTGTTTACGAGTGTGTAGCACCTCCCTCCTTACTCTCT<br />TGCTCCCACTTCACCTTCTGCCATCATTGTAAGTAAGTTTCCTGAGGCCTCCACAGAAGCTCAGCAGATGTCAGTGTCATGCTCCCTGTATAGCCTACAA<br />AACTGTGAGCCAATTAAAGCTCTTTATATATTGCCCAGTCTCAGGTATTTCTTTATAGCATGAGAGAACAGCCAAATCCAGCAGCCATAGACAATATGTA<br />GCAAATGGACATGACTGTGTTTCAATAAAACTTTATTGACAAACACATGCACAAGCAGGTCAGATTTGGCCCATGGGCATTAGTGTCCCAACCTCTGCTC<br />TGGAGTATTCTCTTCAGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCTGCCACCACACCT<br />GGTTAATTTTTGTATTTTTTAATAGAAATAGGGTTTCACCTTGTTGGCCAGGCTGGTCTCAAACTCCTGACATCAGGTGATCCAACCACCTCAGCCTCCC<br />AAAATGCTGGGATTACAGCTGCCCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGTGATTTCACTATGTTGCCTAGGCTGGTCTCGAACT<br />CCTGATCTCAAGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCAGCTGGCCTCTAGATTTTTTTTTTTTTGATCGT<br />TGCTTATTTGGTTTGACTTTCATTTTTTCCCCCATTGTGGTAGTCATTTTCTGAACGCCTGTTAGTTTGTCCATCTCTCTCCTCTGTAGTCCCTAGAGTC<br />AGATGAACTCCTCTGCAGGTGCAATGGTGTAACACACTCTAGTGCTGAATTTTGAGCAGGAGAAAGAGAGCAAGAGTGACCAGTACCCTTGGAAACTCTG<br />GCCTCCTGAGAATTTGGTGTCTTCCCTGCAAAGGTTGCAAACCTGTTAACCCACAGGCCGGAGAGAGAGAGAAGTCAGAATCACGATCTGTTAAGCTTGA<br />GTTTAATATTTGATGCACAGAGATCACTGAGTTTTTTGATAAGAATTAGAGGGGGAAGAAATAGCCAGAGAACAATTTCTATCTCCAGGTGAGGATTCAG<br />GAGATAATTCTGCGAAAAGAACTTCCTGAGAACTAAGATGGGGAAAATCACTGGTATTAGAAGAGTGAAAAGGTCAGTAATTAAGGCTACAACTGTGCTC<br />TTAGAGGCAAAAGAAGAAAATGAGACTGCCAGGCATGAATAATGAGAAATCTTTGATGGAATTAGCCATGCAGAACAGATATTAAATGCATCCTCATTCT<br />TCTCATAGTCAAAAGTATTTGCCTAAGCTGGATGGGAAAAAGAGAATCCCATTTCACTAAGTATAAAAGAGGGGATTTTAGAGAAGGTCTCAGAAGAAAG<br />AGATGTGGCGGTTTGGTGAAACTCACCAGAGGCTGAACCCTCTCCAGCATAACACACGGATTGGGAGGAGTGGGGTGGCATTAGGCCAGGTGCGTAGCCC<br />AGTGCTGCTCTCTCTGGACTTGTTTGCTAGCTGAACTCATCCATTTGCATAATTTTCAGTGCCATTTCTCAGCTGATGAGTCCTGAACTTTTGTCTTGAG<br />GTTAGACTTCTCCTTCAAACAGCAGTCTTAAACACTCAACTTCTTTCTTGTTTTTTCCACTTGTCAACTCATGAACACCTCAACCTTGTTAAATCCAAAG<br />CCAAACTCATGGCTTGGAGTGGTAGGTGATGGCTGTAATCCCAGTGCTATGGGAGGCTGAGGTGGGAGGATTACTTGAGGTCAGGAGTTTGAAGCCAGCC<br />TGGAAAACACAGTGAGACTCCCTATCTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTAGGCATGGTGAAGTGCATCTGTAGGATCTGTAGTCCTGTT<br />ACATGGCAGGCTGAGGCAGGAGGATCACTTGAGCCCAGGAGTTTGAGGCTGCAAAGAGCTATGATTGCACCAATGCACTCCAGCCTGGGTGACAGAGCCA<br />AAGTCCCTGTCTTAAAAAAAAAACAAAAGCAAAACTCTTTTTCCTCCTCCTTCTCCATGGGCTCTGTCCGTGCCATCTCTGTTCTGTAAATGGCACCACC<br />CCCTGCTGAGCTGCTCAAGGTGGTCATAACTCATGTGTTGTGCTAACTCTGCTTTTGCCCTCTTCTCCAGTCAGAAGTCCTGTGATTCTAAACTTTATCC<br />AACTTGTCCACTCTCTCTATCTTCACTGTCATTATCTTTGCCTAGGACACCGCTATCCCAGCTGGGCTACAGCAGCAGCCTCCTAACTGGTCTTAACTGG<br />TCCTCTGCACCTGCTCTCCATGCTCAGCAATCCATTTCCTACCTAGCAGCTTCAGTGATCTTAAGGTGTCCATTGAGTCTCATCCCTGCCTTTCCTGCCC<br />ATGGCACATAGAATAAAATCGAGACCCCGAGTCTTCTGCCTGTTCCTGCCACCTCTCCAGCTCTCTCCTATCTCCTCCCCTTGGCCTACTCTATTTCAGC<br />CACTCTGGCCTCCTTCTGTTTTCTTTGACTTTCAAACCTTTCTCCACAACAGGGCCTTTGCACTTGCTGCTTCAGCCTGGAATGATTTTCCTCTGCACCT<br />CCCCAAATTAGACCATCCTTTAGGTCTCAGCTAAAATGGTGCTTCCAGACAGCTCTTTCCTGACCCCTTTATAAAGTGGACTTCCCTGCTCTTCTCCACC<br />TTAACCTCATTATTTCTTGTTGCGGGAAGTCAGGGACCCCAAATGGAGGGACTGGCTGAAGCCATGGCAGAGGAACATAAATTGTGAAGATTTCATGGAT<br />ATTTATCAGTTCCCAAATAATACTTTTATACTTTCTTATGCCTGTCTTTATTTTAATCTCTTAATCCTGTTATATTCATAAGCTGAGGATGTACATCACC<br />TCAGGACCACTGTGATAATTGTGTTAACTGTACAAATTGATTGTAAAACATGTGTGTTTCAACAATATGAAATCAGTGCACCTTGAAAAAGAAGAGAATA<br />ACAGCAATTTTTAGGGAACAAGGGAAAACAACCATAAAGTCTGACTTACTGCAGGGTTGGGCAAAAGGAGCCATATGTTTCTTGCACGGAGTCTATAAAT<br />GGACGTGCAAGTAGGACAGATATTACTAAATTCTTTTCCTAGCAAGGAATATTAATATTAATACCCTGGGAAAGGAACGCATTCCTGGGGGGAGGTCTAT<br />AAATGGCCGCTCTGGGAATGTCTGTCTTATGCAGTTGAGATAAGGACTGAGATATGCCCTGGTCTCCTGCAGTACCCAAAGGCTTACTAGGGCGAAAAAC<br />TCTGCCCTGGTAAATTTGTGGTCATACTGGTTCTCTGCTCTCGAACCCTGTTTTCTGTTGTTTAAGATGTTTATTAAGACAATACGTGCACCACTGAACA<br />TAGACCCTTATCAGTGGTTCTGCTTTTGCCCTTTGCTTTGTGATCTTTGCTGGACCTTTATCAGTAGTTCTGCTTTTGCCCTTTGTCCTGTTCCCTCAGA<br />AGCATGTGATCTTTCTTAGACCCTTAGTAGTAGTTCTGCTTTTTGCCCTTTGAAGCATGTGATCTTTGTACCTACTCCCTGTTCTTACAGCCCCTCCCAT<br />TTTGAAACCCTTAATAAAAACTTGCTGGTCTGAGACTCAGCAGGCAGCACAGACTTACTGATATGTACTGTCACCTCCAGCGGCCCAGCTGTAAAATTCC<br />TCTCTTTGTAGTGTCTCTCTTTATTTCTCAGCTGGCTGACACTTATGGAAAATGGAAAGAACCTATGTTGAAATATTGGGGGCAGGTTCCATCAATAGTT<br />CTTACATGGATTTACTTATTTTTTGTCTCCCTCCATACCCTAGAAACTCCTGGAGGGCAGAGCTGTGTCTGCCATCTTCATCATTGCATTACCACCACCA<br />AGCACAGTGCCTGGCACAAAAGAGTTGCTCAATAAATAAATCAGGATGAATGGATAAATACATGGATAGGCACTTTGAGCTACAGATGAGTTTAAATACT<br />TTGTGTTTTTCTTAGTCAAACATGTGCAATTAAGCATGTGATAAATGATATGATGACCACACCTGTGTGTTGCCTGATGTTCTTTGCAATCACTAAATGA<br />AGTCAATTGTGCCTGTTTTGACAGTTCTGTTTTCAACCTAATGATCTGTTTCTTTTAACTTCTGGCTGTTGGCTTTGTTTGGGTTTGTTAGCCTGACAAA<br />GTGGCAGACATTAGTATTTGCTCTTTTGTTTAAATGTCATGAACTTTAAAAATGCCTTTGCTTTTGGTAAGAAACCCTAGTTAGGACAGTCTAGCAGTCA<br />GGATGATTTGGGTTCTGGTGCAGTAACAACAATCCCCAAATCTCAGTGGATTCATATAGTGAGGTATTTGTTTGTTTGTTTGTTTTTTCAGACAGGGTCT<br />CACTCTGTCACCCAGACTAGAGTGCAATGGTGCAACCTCAGCTCACTGCAACCTCTGCCTCCCAGACTCAAGCGATTCTCCTGCCTCCTGAGTAGCTGGG<br />ATTACAGGCCTGTGCCACTACTGTCTCACTAATTTTTGTACTTTAGTAGAGACAGGATATCACCATGTTAGCCAGGCTGATCTTGAACTCCTGACCTGAA<br />ATGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATGACAGGCATGAGCCACCATGCCTGGCCACAGTGAGGCTTATTCTTGGTCACGTTGCATGTCTG<br />GGCTGTGTTAGGGCATTGTGGGGTGGTCTGTTCATTGTGTTCACTCAGGGATCCAGGCTGACAAAAGCCCCATCTCTGAATGTGTCCTTGATCACCACTT<br />CAGGGGAAAGGGAATGTGGTGGATCACACAGCCTTTTAACACTTCCACCTGGAGGTGACTCAAGTTGCTCTTGCTCATGGTTCATTGGACAAAGCAGATC<br />ACAGAGACATGGGCAACTTCTCTGTGCCTGGAAGGGGAATCAAAATATGAATAGCTACATTGATTTTCCTTAGCTTTTACACAGAAGGCCTCATTTAAAC<br />AC

Expression



Full and truncated open reading frames discovered in TCONS_00037086

In silico ORF/peptide predictions
>peptide 1 (92 aa)
MCCANSAFALFSSQKSCDSKLYPTCPLSLSSLSLSLPRTPLSQLGYSSSLLTGLNWSSAPALHAQQSISYLAASVILRCPLSLIPAFPAHGT

>peptide 2 (90 aa)
MYCHLQRPSCKIPLFVVSLFISQLADTYGKWKEPMLKYWGQVPSIVLTWIYLFFVSLHTLETPGGQSCVCHLHHCITTTKHSAWHKRVAQ

>peptide 3 (84 aa)
MISLRKNLTTVLVVSFSVANALVYLEKVSTSTRRYLYLAWCGLTSVKSISYFFLGEFFQRQWPGLGLGLCLAFTWVQVVHWRAA

>peptide 4 (77 aa)
MHKQVRFGPWALVSQPLLWSILFSNLCLLGSSNSPASASQVAGITGTCHHTWLIFVFFNRNRVSPCWPGWSQTPDIR

>peptide 5 (77 aa)
MAHRIKSRPRVFCLFLPPLQLSPISSPWPTLFQPLWPPSVFFDFQTFLHNRAFALAASAWNDFPLHLPKLDHPLGLS

>peptide 6 (74 aa)
MVKCICRICSPVTWQAEAGGSLEPRSLRLQRAMIAPMHSSLGDRAKVPVLKKKQKQNSFSSSFSMGSVRAISVL

>peptide 7 (65 aa)
MERTYVEILGAGSINSSYMDLLIFCLPPYPRNSWRAELCLPSSSLHYHHQAQCLAQKSCSINKSG

>peptide 8 (60 aa)
MDTHTVVDPLSSERRSPFGDLKIFFQVAPPLQAGRPSGGAQSEPGSCLVAFLAGASECCT

>peptide 9 (58 aa)
MRDRKRERVTGLPETRTQSSSILGCGLSQGRAAVRATSLLERDTEVPNRKPGLYLLAS

>peptide 10 (50 aa)
MFIKTIRAPLNIDPYQWFCFCPLLCDLCWTFISSSAFALCPVPSEACDLS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT022478 (Evalue: 0)

Best hit to Swiss-Prot:
sp|P03360|POL_AVIRE (Evalue: 1.0E-38)