Detailed information on TCONS_00037086

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00037086 705 359 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00037086 705 359 UTR3 Trans

Sequence

>TCONS_00107867 (7901 nt)
TTGTGATATTTCTGCTAATTTGGCATCCCTTAGCTTAGGCAAGATAGGCAGCGCCTTCTTATACATGATTTCAAAGGGTGAGAACTTAGCCTGGTAAGGG
GTGCACCTTACTTTAAGTAGGGCTAAAGGAAGGAGACTTACTTAATTTACACCGGTTTTTAAGATTAATTTTGTAGGAGTGTTTTTTAGGGTGTGGTTCA
CGCTTTCTACTTGCCTGGAACTCTGGGGCTGATAGAGCTCCAGGCAATAGAGGCACAATGGAGCTTCTATTGAACGTTTAACGCCTTACTGACTGACTGA
GCTATAGGCGAGGTGAAGGCTGCTCTATTATCAGACTTTATGGCAGCAGGCAGCCTATATTGAGGGATGATTTCATTGCGTAAAAACTTAACTACTGTGT
TGGTGGTTTCGTTTTCGGTAGCAAATGCCTTAGTCTATCTGGAGAAGGTGTCTACTAGTACTAGAAGGTATTTGTACTTAGCCTGGTGTGGTTTGACTTC
TGTAAAGTCAATTTCTTACTTTTTTCTCGGCGAGTTTTTTCAGAGACAGTGGCCTGGGCTGGGTTTAGGACTTTGTTTGGCATTTACTTGGGTGCAGGTT
GTGCACTGGAGAGCGGCTTAATCTGATAGGCTTTGAAGACGGGGGATCTTAAAATGGCTCCGGAGGAGCTGAGGTAGCTTTGCTCTTTTTAAGTGGGTGG
TAGACTGCAGGTGACTGATTAAAGTTTCTTTAAGAGTTCAGGATATGAAGATTCTAGAGTCAGGAAGAATCTACTAACTTTCCTGATTTTTATTGGCTCT
GAGATCTGAAGCCAGTTTTTTTGTTGTTGTTGTTGTTGAGTATACGGGATTGTCAGGCAGATCTGGCTGAGGAAAGGAGACTGTGGGCAGCAAGTTTAGA
GGCGTGACTGAAAGTTGCGCTGCGACCTGAGCTGCTGAATCAGCTTTCTAGTTACTATGGGCAAAGCCGTGTTTTCTTTTTGATGTCCTTTGCAGTGGAT
CACAGCTATCTGCTGAGACAGACAAGGGGAGGGGCTCCTGTGATGGGATCAGTCAGATGCCTGCCTGGCCGCTCCCCCTGAGGGGACTTGGGCTCCTCTT
AACATTGGCAGGCTGGTATAAACTTCCGGCTCAGATCAAGCTATGCCTGATGCTGCCTTAAGCCTTATGAGGTCGCCACGGAACCGCAGGTGAGGGTCTA
CTTGAACTCCGTAGCTTTAGCCGTGGAGCTACAAACTGGAGGACAAGCGCAAGCCCTTGTCCTCACTCATTCATTATTCACACAGAGTATATAACAGTTT
TTTTTTTTTTCTTTCTTGGAGATTCTTCAAGAAACTTGAACAAGAGAAAGATGAGAGATAGAAAGAGAGAGAGAGTGACCGGTCTGCCAGAAACCAGGAC
TCAGTCCTCCAGCATCCTGGGATGTGGACTGAGTCAAGGGAGGGCCGCTGTCAGAGCCACTTCCCTCCTAGAAAGAGACACAGAGGTGCCTAACAGAAAA
CCAGGGCTCTACCTTCTAGCGTCCTAGAGAAACAGGCAGAGTCAAAAGAGGGACACCCTCATCAGGGCCGCTTCCCTCTTACTAGAACTGAAGTCAAATC
TGACCTACCTGACCTCAGGGTCAGAAGTCGAGGACTCAGATGTGGAATTTTTATGGACACCCACACGGTAGTCGATCCGCTCTCCTCTGAAAGACGGTCA
CCTTTCGGGGACCTAAAAATTTTTTTTCAGGTGGCACCCCCCCTACAAGCCGGCCGGCCTTCTGGGGGAGCCCAGAGCGAGCCCGGCTCTTGCCTGGTGG
CGTTTCTTGCTGGGGCCTCCGAATGTTGTACTTGAGCGAGTTAGAGAAAATGTCACACTTTGACATGAATTAAGAGTCTGTTTATTTAGCTGACGGCCAA
GAAATGGCTAACTCTTAAAGTTCTCTTGGCCCCGAAGAAAGGGCTAGATTTTCTTTTATACTTCAGTTTAGACAGGGGAAACGGGTCTAGTTAAAAGAAT
TTTACAGAAGTAAAGTAGGCAAAAAAGTTAAAAGGATAAATTGTTACAGGAAAGTAAACAGTTCTAGGTGTAAGGGCTTTAAGACTATTACAAAGTGATA
GACGTGGGGCTTTAGGCATTATCAATCGGACAAATTCCTAGGAACTGCGGATATTGCTCGCCACAGTATCTTATGAGTTAATTGCATTCTTAGATGTGCT
AAGAGTCAGCTTGCACAAGTTAAGTCCTTGAGGAAGGGGCTGTCAGTGAAAAGGCCAAGATAAAATCTATCTAGCTCTCTTAGCTAAAAGAAAGTCAATT
CAGGTAGAAACAAGGCTAAGTGATTAAAAGAAAAGGAAAGTCTAAGAACAAAGTTAATAAAAACAAGGTTAGGCATTACAGATGGGGTCATCCTTATATT
CAGCACAGCGTTTGTCCTGAAACTTCAATGGAGTGCTCCTAGTTTGATAACTTGGACCATGCCAAATAAATTGAATTTCTCTTTCTTAACAACAGATGTT
TGAATACAGCCCCGTGACCCTTTCTGCTCCTTCCTGCCTTCCTCCTCTCCTCTTCCTTCCCTTCCTTTTCAAGAGCAGGGTTTGCAAACTTTTTCTTGAA
AGCATCAGATAGTAAATATTTTCGAATTCGTGGGCCATACAGTCTCTTATAGTAGTTGCTCAACTCTGCCACCCATAGCATGAAAGCAGCTGATATAGTT
GAATATGAGTCCCCACCCAAAACTCATGTTGCAATCCCCAGTGTTAGAGGTGGGGTCTGGTGGGAAGAGATTGGATCATGGGGGTGGATTTCTCATGAAT
GATTTAGCCTCATCCCTTTGGTCCTGTCCTTGCAATAGTGAGTGAGTTCTTGCAAGATCTGGTTGTTTACGAGTGTGTAGCACCTCCCTCCTTACTCTCT
TGCTCCCACTTCACCTTCTGCCATCATTGTAAGTAAGTTTCCTGAGGCCTCCACAGAAGCTCAGCAGATGTCAGTGTCATGCTCCCTGTATAGCCTACAA
AACTGTGAGCCAATTAAAGCTCTTTATATATTGCCCAGTCTCAGGTATTTCTTTATAGCATGAGAGAACAGCCAAATCCAGCAGCCATAGACAATATGTA
GCAAATGGACATGACTGTGTTTCAATAAAACTTTATTGACAAACACATGCACAAGCAGGTCAGATTTGGCCCATGGGCATTAGTGTCCCAACCTCTGCTC
TGGAGTATTCTCTTCAGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCTGCCACCACACCT
GGTTAATTTTTGTATTTTTTAATAGAAATAGGGTTTCACCTTGTTGGCCAGGCTGGTCTCAAACTCCTGACATCAGGTGATCCAACCACCTCAGCCTCCC
AAAATGCTGGGATTACAGCTGCCCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGTGATTTCACTATGTTGCCTAGGCTGGTCTCGAACT
CCTGATCTCAAGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCAGCTGGCCTCTAGATTTTTTTTTTTTTGATCGT
TGCTTATTTGGTTTGACTTTCATTTTTTCCCCCATTGTGGTAGTCATTTTCTGAACGCCTGTTAGTTTGTCCATCTCTCTCCTCTGTAGTCCCTAGAGTC
AGATGAACTCCTCTGCAGGTGCAATGGTGTAACACACTCTAGTGCTGAATTTTGAGCAGGAGAAAGAGAGCAAGAGTGACCAGTACCCTTGGAAACTCTG
GCCTCCTGAGAATTTGGTGTCTTCCCTGCAAAGGTTGCAAACCTGTTAACCCACAGGCCGGAGAGAGAGAGAAGTCAGAATCACGATCTGTTAAGCTTGA
GTTTAATATTTGATGCACAGAGATCACTGAGTTTTTTGATAAGAATTAGAGGGGGAAGAAATAGCCAGAGAACAATTTCTATCTCCAGGTGAGGATTCAG
GAGATAATTCTGCGAAAAGAACTTCCTGAGAACTAAGATGGGGAAAATCACTGGTATTAGAAGAGTGAAAAGGTCAGTAATTAAGGCTACAACTGTGCTC
TTAGAGGCAAAAGAAGAAAATGAGACTGCCAGGCATGAATAATGAGAAATCTTTGATGGAATTAGCCATGCAGAACAGATATTAAATGCATCCTCATTCT
TCTCATAGTCAAAAGTATTTGCCTAAGCTGGATGGGAAAAAGAGAATCCCATTTCACTAAGTATAAAAGAGGGGATTTTAGAGAAGGTCTCAGAAGAAAG
AGATGTGGCGGTTTGGTGAAACTCACCAGAGGCTGAACCCTCTCCAGCATAACACACGGATTGGGAGGAGTGGGGTGGCATTAGGCCAGGTGCGTAGCCC
AGTGCTGCTCTCTCTGGACTTGTTTGCTAGCTGAACTCATCCATTTGCATAATTTTCAGTGCCATTTCTCAGCTGATGAGTCCTGAACTTTTGTCTTGAG
GTTAGACTTCTCCTTCAAACAGCAGTCTTAAACACTCAACTTCTTTCTTGTTTTTTCCACTTGTCAACTCATGAACACCTCAACCTTGTTAAATCCAAAG
CCAAACTCATGGCTTGGAGTGGTAGGTGATGGCTGTAATCCCAGTGCTATGGGAGGCTGAGGTGGGAGGATTACTTGAGGTCAGGAGTTTGAAGCCAGCC
TGGAAAACACAGTGAGACTCCCTATCTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTAGGCATGGTGAAGTGCATCTGTAGGATCTGTAGTCCTGTT
ACATGGCAGGCTGAGGCAGGAGGATCACTTGAGCCCAGGAGTTTGAGGCTGCAAAGAGCTATGATTGCACCAATGCACTCCAGCCTGGGTGACAGAGCCA
AAGTCCCTGTCTTAAAAAAAAAACAAAAGCAAAACTCTTTTTCCTCCTCCTTCTCCATGGGCTCTGTCCGTGCCATCTCTGTTCTGTAAATGGCACCACC
CCCTGCTGAGCTGCTCAAGGTGGTCATAACTCATGTGTTGTGCTAACTCTGCTTTTGCCCTCTTCTCCAGTCAGAAGTCCTGTGATTCTAAACTTTATCC
AACTTGTCCACTCTCTCTATCTTCACTGTCATTATCTTTGCCTAGGACACCGCTATCCCAGCTGGGCTACAGCAGCAGCCTCCTAACTGGTCTTAACTGG
TCCTCTGCACCTGCTCTCCATGCTCAGCAATCCATTTCCTACCTAGCAGCTTCAGTGATCTTAAGGTGTCCATTGAGTCTCATCCCTGCCTTTCCTGCCC
ATGGCACATAGAATAAAATCGAGACCCCGAGTCTTCTGCCTGTTCCTGCCACCTCTCCAGCTCTCTCCTATCTCCTCCCCTTGGCCTACTCTATTTCAGC
CACTCTGGCCTCCTTCTGTTTTCTTTGACTTTCAAACCTTTCTCCACAACAGGGCCTTTGCACTTGCTGCTTCAGCCTGGAATGATTTTCCTCTGCACCT
CCCCAAATTAGACCATCCTTTAGGTCTCAGCTAAAATGGTGCTTCCAGACAGCTCTTTCCTGACCCCTTTATAAAGTGGACTTCCCTGCTCTTCTCCACC
TTAACCTCATTATTTCTTGTTGCGGGAAGTCAGGGACCCCAAATGGAGGGACTGGCTGAAGCCATGGCAGAGGAACATAAATTGTGAAGATTTCATGGAT
ATTTATCAGTTCCCAAATAATACTTTTATACTTTCTTATGCCTGTCTTTATTTTAATCTCTTAATCCTGTTATATTCATAAGCTGAGGATGTACATCACC
TCAGGACCACTGTGATAATTGTGTTAACTGTACAAATTGATTGTAAAACATGTGTGTTTCAACAATATGAAATCAGTGCACCTTGAAAAAGAAGAGAATA
ACAGCAATTTTTAGGGAACAAGGGAAAACAACCATAAAGTCTGACTTACTGCAGGGTTGGGCAAAAGGAGCCATATGTTTCTTGCACGGAGTCTATAAAT
GGACGTGCAAGTAGGACAGATATTACTAAATTCTTTTCCTAGCAAGGAATATTAATATTAATACCCTGGGAAAGGAACGCATTCCTGGGGGGAGGTCTAT
AAATGGCCGCTCTGGGAATGTCTGTCTTATGCAGTTGAGATAAGGACTGAGATATGCCCTGGTCTCCTGCAGTACCCAAAGGCTTACTAGGGCGAAAAAC
TCTGCCCTGGTAAATTTGTGGTCATACTGGTTCTCTGCTCTCGAACCCTGTTTTCTGTTGTTTAAGATGTTTATTAAGACAATACGTGCACCACTGAACA
TAGACCCTTATCAGTGGTTCTGCTTTTGCCCTTTGCTTTGTGATCTTTGCTGGACCTTTATCAGTAGTTCTGCTTTTGCCCTTTGTCCTGTTCCCTCAGA
AGCATGTGATCTTTCTTAGACCCTTAGTAGTAGTTCTGCTTTTTGCCCTTTGAAGCATGTGATCTTTGTACCTACTCCCTGTTCTTACAGCCCCTCCCAT
TTTGAAACCCTTAATAAAAACTTGCTGGTCTGAGACTCAGCAGGCAGCACAGACTTACTGATATGTACTGTCACCTCCAGCGGCCCAGCTGTAAAATTCC
TCTCTTTGTAGTGTCTCTCTTTATTTCTCAGCTGGCTGACACTTATGGAAAATGGAAAGAACCTATGTTGAAATATTGGGGGCAGGTTCCATCAATAGTT
CTTACATGGATTTACTTATTTTTTGTCTCCCTCCATACCCTAGAAACTCCTGGAGGGCAGAGCTGTGTCTGCCATCTTCATCATTGCATTACCACCACCA
AGCACAGTGCCTGGCACAAAAGAGTTGCTCAATAAATAAATCAGGATGAATGGATAAATACATGGATAGGCACTTTGAGCTACAGATGAGTTTAAATACT
TTGTGTTTTTCTTAGTCAAACATGTGCAATTAAGCATGTGATAAATGATATGATGACCACACCTGTGTGTTGCCTGATGTTCTTTGCAATCACTAAATGA
AGTCAATTGTGCCTGTTTTGACAGTTCTGTTTTCAACCTAATGATCTGTTTCTTTTAACTTCTGGCTGTTGGCTTTGTTTGGGTTTGTTAGCCTGACAAA
GTGGCAGACATTAGTATTTGCTCTTTTGTTTAAATGTCATGAACTTTAAAAATGCCTTTGCTTTTGGTAAGAAACCCTAGTTAGGACAGTCTAGCAGTCA
GGATGATTTGGGTTCTGGTGCAGTAACAACAATCCCCAAATCTCAGTGGATTCATATAGTGAGGTATTTGTTTGTTTGTTTGTTTTTTCAGACAGGGTCT
CACTCTGTCACCCAGACTAGAGTGCAATGGTGCAACCTCAGCTCACTGCAACCTCTGCCTCCCAGACTCAAGCGATTCTCCTGCCTCCTGAGTAGCTGGG
ATTACAGGCCTGTGCCACTACTGTCTCACTAATTTTTGTACTTTAGTAGAGACAGGATATCACCATGTTAGCCAGGCTGATCTTGAACTCCTGACCTGAA
ATGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATGACAGGCATGAGCCACCATGCCTGGCCACAGTGAGGCTTATTCTTGGTCACGTTGCATGTCTG
GGCTGTGTTAGGGCATTGTGGGGTGGTCTGTTCATTGTGTTCACTCAGGGATCCAGGCTGACAAAAGCCCCATCTCTGAATGTGTCCTTGATCACCACTT
CAGGGGAAAGGGAATGTGGTGGATCACACAGCCTTTTAACACTTCCACCTGGAGGTGACTCAAGTTGCTCTTGCTCATGGTTCATTGGACAAAGCAGATC
ACAGAGACATGGGCAACTTCTCTGTGCCTGGAAGGGGAATCAAAATATGAATAGCTACATTGATTTTCCTTAGCTTTTACACAGAAGGCCTCATTTAAAC
AC

Expression



Full and truncated open reading frames discovered in TCONS_00107867

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.