Detailed information on TCONS_00038586

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00249285 zinc finger protein 883 novel protein coding TCONS_00038586 511 314 UTR3 Trans

Sequence

>TCONS_00038586 (4035 nt)
AACATGACAAAAACTATCTGCATTATATAGTTTTTTTCTTTAGTTCAAGTAATACTCTGGGAATTTTTATTAACTCACTGCCGTCATTTTGAATATCCTT<br />TTTTAAAAAACGAAGGATAGGAAAATGCTAGATAGAGGATCCTGATAAATGAAATCAAAGTAGCAGATATTTGCTAGGTTTCTGCTTGTAATATGAATAC<br />ATACAGACAGTTAAGCATGTATAAGTATATGTAAGTATATATAAGGGCTGATCTCAAAGACAAAAGGGGTTCAAAGAATAACTGATGTAAGTTTCTGTAG<br />TTTCAGATAGTACTTCTGAGTTTTTGATGGCTGAAAACTTAGTGAAAGCATCAGTGCCGGAGGATGAGATTCTGACTGTCTTGAATAGCAAACAGATACA<br />GAAATCAAATCTACCTTTAAATAAAACTCAACAATTCAACATCTGCACACTGTCAGCTGAAGAACAGAAGATCCTAGAGTCCCTTAATGATCTCAGTGAA<br />AGACTACATTATATACAAGAATCCATTTGCAAAAACCCATCCATCAAAAATACTTTACAAATAATACCACTTCTGGAGAAGAGAGAAGATAGAACCAGCA<br />GCTGCAGAGACAAGAGATAATTCCAGCAGAATCCGTCTAAGAAGACCTTTCATGTACTTCCCTAGGACTAGATGCATACCGTTTTGTGAAAACCAGCCAT<br />AGGAAAACATGTGAGCAACAACCCCCATGAACATTTGTCCTAACTCAGATTTTGTGAGCAGTGAAGTTTAACAGAGCAGTGACATTTAACAAAGCAGTGA<br />AGTTTAACAGAGTTCTGAGAATACCATGAAAGACATTATGCCTGCCTAAACAAAAAGCAGGACATAACCTAGCTCTGAATACATGCCACAAGGATGAAGC<br />TTGTGAGTAGAGCAAACAAACGTTTTTCCAAAGAATTCACAGTGCTCCTTTGCAATTTATAGATTTCATGTTGAAATATATGTTAAATAAAATTTCTGTT<br />TATTGAACCTCTTTATTAAACCTCTAACTTACTGATAAGATGTTTATGAAGTATGGCATATTTTGATTTTTTTAATTGTAATAAATATTCTTAAAGTTAC<br />CACATCCCACAAAATGGCCCTTGGTGGCAGCAATAGAGCAAAGGTTACCTTTTTGTATGGTGAAGGGAGGCCTTCCTATGGCTGTACAATTACATCGATT<br />CTTCCAAATTTCATATTTCATACATGGCACTTTGGCATACCGAAAAAACATGAAATTTTTCATTAAAATGCCATGAATCAAGCCAGGGCCGTTGGCTTAT<br />GCCTGTAATCCCAGCACTTTGCAGGCCGAGGTAGACAGATGGCTTGAGCTCAGGAGTTCGTGACCAGCCTGGGCAACCCTGTCTCTACAAAAAATACAAA<br />AATTAACCAGGCATGGTGGCATGCACCTGTAGTCCCAGCTACTTGGGGTGCTGAGGCGGGAGGATTACTTGAGCCCAGGAGGATTACTTCAACCTGGGAG<br />GTTGAGGCTGCAGTGAGCTGTGTTTCGCCACTGCACACCAGCCTGGGTGACAGTGTGAGACCCAGCCTCAAAAAAAAAAAAAAAAAAGTGATGAATCAAA<br />ATTAGAAATTAAGAGTTTTAAGAAAACATGTGGCCTTTTATTAATAACACTACTAAATTTTGGTTCCTCCATAGAATTAGTTTTGAAACACTTGATGTAG<br />TGAGAAATGCATTAACATGTTGAATGCCTACCATGTACCAAATTTTGTGCATATATTTTTTATTTAATCTGACCAGCCACCCAAACCATGGGTATTTTTG<br />TCTCCACTTTAGAGATGAGAAACTGAGCCAAGGCCACATAGCTACCTACAGTGACAGAATCAAAATTCAAACTCAGGTTTATCTAGTTCCAAAACCCATG<br />TTCTTTCTGCCACACCATGTTAGTAGAAATGGAAACTATTGGATGAAATGAGGAAAAACAGGAAAAGAATTCACTTTTTAAATGAAGAAATTAGTGAAAA<br />AATTGACCTAATGAAGGAAACATTTGTGCTTTCCTATATTTTTAATTTTAAGAATAGGATTTCGGAAGGCGACAGAAAATTTAGTTCTTAGACATTTAAA<br />TAGAAAGTTGTGTGCCCCTATAGAAAATATTTGAGAATTTCTTATACTATCAAGAAAAAATTCTGTGAATTAAGATGTAATTTATAAAATAACATTTCAA<br />TGGGGGTAAACAGGCCAGAAGAGTGTGCCAAGTTGTTTGTGAATCATTCCAAGCACCTCAGATGAAAACTCACTTTTATTAAAAAAAAAAAAGACAAGGG<br />TTTATATTCATATACACTAGTATATATGTACACAGCAGCATCCTGCATGCCAAAGTAGCTTCACCGTTAGTAATCCCTCACTTTAATACCTCTTAGGAAC<br />CAAAGAATGCCTCTACAAGCAAAAAGATAGTTGAAAATAGTTAAGATCCAAAGTCAGAATAGGCCAAAAAAAAAAAAAAAAAAAGCCTAAATAGTAAGCT<br />GGTGAAACAAGATAAGATTTGCATTTTACTAGAACTTGCACATTATGATATTGTCCTTTTATGAAACTGTCATATGACCAGAATTCTTCTGTAATTCTGC<br />CCATGACTCCTCCAGAATTTTAGTAGATACAGGGTGGGTTCATTAAGAGTGATAAAAGTGGGAAGACATAAAGAGCCTTTGTGAATTAAAGTGGAAGAGA<br />ATAACACTTTGCATGCTATAAACGTGAAAACTAACATTTTTGGCCAGACACAGTGGCTCATGCATGTAATTCTAGCACTTTGGAGGCCAAGGCAGGAGGA<br />CTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAATGTAGCAAGACCCCATCTCTATATAAAATATAAAAATGTTGGCTGTGCACGGTAGCTTATGCC<br />TGTAATCTCAGCACTTTGGGAGGCCAAGGCAGGCAGATCATGAGGTCAAGAGATCAAGACCATCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAA<br />TACAAAAATAGCTGGGCATGGTGGCACGCACCTCTACTCCCAGCTACTAGGAGGCTGAGGCAGGAGAATCGTTTGAACCCAGGAGGTAGAGGTTGCAGTG<br />AGCTGAGATTGCACCACTGCACCAGCCTGGCAACAGAGCAAGACTCCGTCTCACAAAAATGAATAAATAAAATAAAAATAAAAATGTTACTTTTTAAAAA<br />GTAACTTTTTTAATAATATAAGAAAGAAAAATGCCCTTTCACACTGAATCTTCAAGTTCTAAGGAAGAAAAGAGTCTCCTTTCGAATGTGAAGAAGTAAA<br />TTTAGAGGAAATCAAACAAGCATCACTTTCCTCAGTGGAAAAACTTATGAAACTTCTTATAAGAGAGAGTAATCTCAGGCCGGACATGCTGGCTCATACC<br />TGTAATCCCAGAACTTTGGGAGGCCGAGGCAGGTGGATCATTTGAGCTCAGGAATTCAAGACCAGCCTGGGTAATATGGCAAGAGCCCAACTCTACTAAA<br />AATACAAAAAGAAAAGAAAACAGCCAAGCTTGGTGGTATGTGCCTGTGGTCCCAGCTACTGGGGAGGCTGAGGTGGGAGGATCGTTTGAGCCTGGGAGGC<br />AGAGGTTGCAGTGATCAGGAATTGTGCCACTGCACTCCAACCTGAGTGACAGAGCAACACTCTGTCTTAAAAGAAAAAAAAAAAAGAGAGAGATAGTAAT<br />CTCTTGGGCAAAAGGTATCAAATAATTGAAAGAAAAGTTTAAACACATTTCCGAGAGGCAGGGCAACTAATAACTGGTCAGAAAAATTTAGACGGTCTTC<br />ATTTTAAAATTGGCATCAGGAAGGATTACCATGAACTTATTTTAAATCCATATTGTACCAGAATGACTATGTCTGTGTTTCTTAGGAATGTTGAAGCTTT<br />TTGTGAAAACTGTACTGTATACATATATAAATATACACACACTTACATGTATGTATTTTGATAGATATTACATGGACTAAATTTTGTCAATTTCATGTAA<br />TTTACCCTTTGCAATAAAAATGATTCATTAAATAT

Expression



Full and truncated open reading frames discovered in TCONS_00038586

In silico ORF/peptide predictions
>peptide 1 (97 aa)
MAENLVKASVPEDEILTVLNSKQIQKSNLPLNKTQQFNICTLSAEEQKILESLNDLSERLHYIQESICKNPSIKNTLQIIPLLEKREDRTSSCRDKR

>peptide 2 (75 aa)
MPTMYQILCIYFLFNLTSHPNHGYFCLHFRDEKLSQGHIATYSDRIKIQTQVYLVPKPMFFLPHHVSRNGNYWMK

>peptide 3 (50 aa)
MALGGSNRAKVTFLYGEGRPSYGCTITSILPNFIFHTWHFGIPKKHEIFH


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT076181 (Evalue: 5.0E-83)

Best hit to Swiss-Prot:
sp|Q9P2H0|K1377_HUMAN (Evalue: 4.0E-53)