Detailed information on TCONS_00042291

lncRNA-RNA interactions

Number of interactions: 55

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding TCONS_00042291 667 295 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00042291 632 289 UTR3 Trans
ENST00000527227 NAD synthetase 1 retained intron TCONS_00042291 509 221 noncoding Trans
ENST00000530055 NAD synthetase 1 protein coding TCONS_00042291 509 221 UTR5 Trans
ENST00000553936 gephyrin nonsense mediated decay TCONS_00042291 513 293 CDS_UTR Trans
ENST00000569455 cadherin 13 processed transcript TCONS_00042291 522 294 noncoding Trans
ENST00000579685 adenomatosis polyposis coli down-regulated 1 nonsense mediated decay TCONS_00042291 502 287 CDS Trans
ENST00000583694 FYVE, RhoGEF and PH domain containing 4 protein coding TCONS_00042291 514 296 UTR5 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00042291 582 296 UTR3 Trans
TCONS_00025758 zinc finger, MIZ-type containing 1 novel protein coding TCONS_00042291 601 297 UTR5 Trans
TCONS_00025760 zinc finger, MIZ-type containing 1 novel protein coding TCONS_00042291 601 297 UTR5 Trans
TCONS_00025761 zinc finger, MIZ-type containing 1 novel protein coding TCONS_00042291 601 297 UTR5 Trans
TCONS_00037379 NAD synthetase 1 novel protein coding TCONS_00042291 509 221 UTR5 Trans
TCONS_00037380 NAD synthetase 1 novel protein coding TCONS_00042291 509 221 UTR5 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding TCONS_00042291 608 285 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding TCONS_00042291 608 285 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding TCONS_00042291 608 285 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding TCONS_00042291 615 294 UTR3 Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding TCONS_00042291 602 304 UTR5 Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding TCONS_00042291 667 295 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding TCONS_00042291 667 295 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding TCONS_00042291 667 295 UTR3 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding TCONS_00042291 603 287 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding TCONS_00042291 603 287 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding TCONS_00042291 603 287 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00042291 614 286 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00042291 615 279 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00042291 615 279 UTR3 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding TCONS_00042291 620 292 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding TCONS_00042291 606 295 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding TCONS_00042291 603 297 UTR5 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding TCONS_00042291 609 290 UTR5 Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding TCONS_00042291 664 278 UTR5 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00042291 602 300 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00042291 602 300 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00042291 602 300 UTR5 Trans
TCONS_00142174 LY6/PLAUR domain containing 6B novel protein coding TCONS_00042291 621 298 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00042291 660 302 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00042291 638 294 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding TCONS_00042291 620 302 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding TCONS_00042291 638 294 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding TCONS_00042291 638 294 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding TCONS_00042291 620 302 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding TCONS_00042291 620 302 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00042291 632 289 UTR3 Trans
TCONS_00160558 cerebellin 4 precursor novel protein coding TCONS_00042291 530 292 UTR3 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding TCONS_00042291 643 298 UTR5 Trans
TCONS_00185321 transferrin receptor novel protein coding TCONS_00042291 614 289 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00042291 611 291 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00042291 611 291 UTR5 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding TCONS_00042291 601 296 UTR3 Trans
TCONS_00224726 caldesmon 1 novel protein coding TCONS_00042291 532 290 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding TCONS_00042291 532 290 UTR3 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding TCONS_00042291 623 292 UTR5 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding TCONS_00042291 609 288 UTR3 Trans

Sequence

>TCONS_00251973 (6144 nt)
GCGTATTGCTGAAAAGTGCGCCCTACGAAAGGACGGTCGACTTCGGCGGGGCCCAGGTGAGAAAGGCCCACCTGTGTCCTGGTTGAGGGTCTCCAGGGTT
CTTTGGGGCCCGAGGTGCCAATGGGTCATGTTTGGTTAGAAGGTGACAATCTACAGAATTCTACAGATTCCAGGTGCTATGGACCTATTCCATATGGACT
AATAAGAGGACGAATCTTCTTTAAGATTTGGCCTCTGAGTGATTTTGGATTTTTACGTGCCAGCCCTAATGGCCACAGATTTTCTGATGATTAGTAAGCA
TTTATTCTTTTGACTTGATTATTGTCTCCTTTTCATGTGAATTTATTACTCCCGTTGAAACCGTGTACTTACCAATAAACTATTTGCTATTCAGTTTTAG
TTGTTTTTAATTGTTAAATGTAAAGAATATTCAACACACATTCTGCCAAGTTCTGTTAGTTCAAAATATATGGATAAAAATGTAACCCAAAAAAGTCATC
TAAATTTTATGATACAAAAATATTGTGGGAGGGGGAACCTGGATGACTACCTCACTTTTGAATTCTTGTTCTTATAGGTATAATGAAACTAATCTATTCT
TCTTAAATATACCTCATACTTTAGCAGCTACATTTACAAGTCAGAGTAGTAACTATTCGTATTTATAAGTTCAACCTGACAATGCCAGGTTTGATAAAAA
GCTGCTAGTCTACATGCTCAGCCCACTCATTTGAAATTAAGTAAAAATGTTTCTAAAGGATCCCTTAAAGTTCTTTAAATGAGTTCTGACTTTTACTGTA
CACAAAATATTAAATACATAGAAAAATGCATCTTTAAGGCATATGCCATCTGTAGTTGGCTATAGTCAATAATACTTTATAAAAGTTCATTTCAGCATAG
CAGCAGTGCAATGGCCCTGTCTTCATAAATACAGGCATTAATACTATATCTTTTTTTATTTATTTTATTTTATTTTTTTTGAGACAGAGTCTTGCTCTCT
GTAGCCCAGGCTGCAGTGCAGTGGCACAACCTCGGCTCACTCTGCCTCCTGGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCGAGTAGCTGGGACCACAG
GCAGACACCAACGTGACTGGCTAATTTTTAAAAAAATTATTTTTAGTAGATATGGGGTTTCACCATGTTGGCCAGGGTGGTCTTGAACTCCTGACCAAAG
GTGATCCGCCTGCCTTAGTCTCCCAAAGTGCTGGGATTACAGATGTGAGCCACCATGCCTGGCCCCAATATTATATCAACACTCCAAAATAAAAGGGGAA
ATAATGCACCAACTTCCAAGTCATTATTTTTAAAAAAGCTTCTGGCCAGGCATGGTGGCTCACGCCTGCAATCCCAGCACTTTGGGAGGTTGAGGTGGGC
GGATCATTTGAGGCCAGGAGTTCAAGACCAGCCTAGCCAACATGATGAAATCCCATCTCTATTAACAAAACTTAGGCCAGGCACGGTGGCTCAAACCTGT
AATCCTAGCACTTTGGGAGGTCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGGAACCCCATCTCTACTAAAAAT
ACAAAAATTAGCTGGGCATGGTGGTGGGCACGTGTAATCCCAGCTATTCGGGAGGCTGAGGCTGGAGAATCACTTGAACCCAGGAGACGGAGGTTACAGC
GACCTGAGATCATGGCACTGCACTCCAGCTGGCGCGACAGAGTGAGACTCTGTCTTAGAAAAAAGAAATTAAAATTAAAAGCTTCCATTTCCTAAATTAC
ATTTAAATTTGAAGATGGCAGTGTTTACAAGCTTTGGAAATACGGACCAAGATTGGAGGCAACACTTTCTACAGTTGCCACTTTGTCTTTATTAACTTTG
AAATAACCTTATGAATATCCATAACCAGCCTTCCTTATGGAAGAACTGGCCTCACATTATTCACAAAGATTCTAGGTGTACAACAGCCCCATAACTTTAG
CAACTAGAAACGTTATCGGTTAGACCAGAAACTTAGTAACTATAAAGGAATATGATGATACTGTTACCCACTGAAAAGAGGAGACATGCTCATATTAAGA
AAATTCTTATTTTGTGTCATGGAAAAAAATGACATAATAAAGTTCTCAGATGGGAATTCACCAAATATAATCAAATCTATTTTTGTGACAACTTGTAAAT
ATAAATTATAAATACAAATAAATAATTATATTCATTCTCTATTAATCTGAGGTGGTCTCTGCTTGATAATTGTATATTTTCTTTGCAAATAATCGGGCTG
ACAAATAATCCATTTCCTTGAATGGACAAAGCTCAACGGCTTCTCATCATGTCTCAATACCACAGTTAAAGCATTTCAAGTTGTGAACAATTTTAGTTAT
AATGAAGGAGTTCTATAATTAGTGAACATGTATCACAAGAAATCAGGCTAACTTCTTCCGCTTCATCCTTGGAAACACTGTATTTTCCACCACATCTGCA
ACTCAGATAAAAAGAGTGATCACCTGCAAAAGAAAACAAAATAATCTTTCAAAGACTTGTAAGTAACTACCTCACTAATACCCTTAAAAGGTGCAGAGTT
TATTCCATAGGAATTGTAAAACAAAACAAAGAAGCTCAGTAAAGATAAAATGTATTTAAAGGAGAACTGGATTTCTTGAAAGGGGCAGTGTTTCTAAAAA
TTATCTACCAAAGAATCTTTCTCTGTAGAGGAGATGGGTTGAAGCTATGAATTAAAAGTCCAAGGATTTTGGGAGGAGAGGGCATGCTCAGAAGTAACCC
ATGAAACTTATTTGAAGTTTTATGTTTTCTTAAAATTCATATAAATTTTACATTCTTTTCAACAATGTATTTGTCTAAAATATTACAGTGAAGGAAAAGA
AAAACAGCCCTACCTGTCTCACTGTTAGGGAGGATGATGCTTTTGCCTGAAGTCTATCCTTTAGAGAAAGCCAGACTATTTATCAAATGCAACATCTGGA
TACTTTCTCTTCTAGTGTCACACTATTTCAAGAATCTTGACTTAAGTCTATAAACACAACACCATGTTGTTGTTGTTTTTTTAAATCCTATGGGGGTATG
TGTGTGTGTGTTTGATGTTTACAAATGATACATGAACCAACAAGATGCTGAAGTGAGATGCCCAAAGGAGGCAATACGGTGCAATACTTAGGCTCCTGAT
CGTGGAAATTTTAAGTGTGTCATTTTCCTGGGAAGTTGAAATGCTTGTGCCCTTTGACTTAAAGAATCTCTGATCCATTGGTCATTCCATTTTACTGTCT
CTGAGAAGTAACTGTCAAAGGAAAATAACTTATCAGTCACATTATTTTACCACCATTATAATTGATTATTACATAAATAAGTCTCAAAGGACTCATGATT
TCATACAAATATCTTCATTCCATTATCAAATTTGATTAATACTTAGATCGCATCATATGTAGTTTAAAAAAGAAAAATTCCACTGCCTTGTACCTGCTCT
CTTATCAAGTTCAGCCTTGGAAAAACTGGCAATTAAATAAGCTAACTTTATGTGTTTTTTTTTTTTTTAATCAGTAAGGAAAATGAATTCATTCACCTAA
TCCAGCTTTTTATTCTTTACCACAATGCCTTTGCTCTCCATACAGAAAAATAATTTAATCTTGAATTCCAAATGCAAACATCTTCCCTGTCTAAGCCAAC
ATCTATGTACTACAGCATGTTCTGAAAATGAATTTTTTTATTATTAAATTGTCTAAAAAGATACATATTCTAACCATTGATTTTCCTAAGCTAAATCTCC
CCCTACCCCCTTGTTTTTCTACTACCTCAGTGAACCCTGAAAAACAATTTGAGTTGACATGTTCTTGGTAAATGACACAGAGGACACCATGGGCTACTGT
GGAGTTTTGTCATAGATGACTCCAAATGTTAATGCTCACTAAAAATTCACATCTTGTAAAAGTTCTGCTTATATTATTATACCATCAATCTTTTAACCAG
GTGATAACTTTTACAGAAATCATCATTTTAAATACTCTGAATGAAGGCCAACAAAATGACCAAGGCATATAACAGACTAACTGTAAGGGCAAAGATTAGC
TTCAATATCTGAACAACTCACATATGCCTTTTAAGCATAATAAAATGCATCATTTCATACTGCCCTTTGATCAGGCAACCAACAATTTGGCTATGTCTAT
CCTGTAGGGTTTCATGAACTTTTCTCCTGTTCTGGAGCTTCACTTTCCATAGCTATTCTGCAAATGATCCTAAAGGGATCTTCAAACAAATTTTTCCTTT
CCTAGTTGATCACACTTTTTATTTAATTTCATCTGCCAAAATTGCTCTTTTTAATTGGAAAAAAAATTTAGCTCAAAACTTCCATGATTCGTTTTTAAGT
ATTTCTACAAGAATAATGGTTTCATGTAGCTCTTGCTCAGTATTTTCTCTCATTAAGATAAGAATTATTTCCATCTTTAGTTATGAAAACCTAAGCGTCT
AAGGGCATCCTATACTTTTAAGATTAACTGTATTGGCTATGGATGGGATTCTTCTATATCTTCTTTACTGTCAAATTTACTTTAGGGAGTTCCAGGGGCA
ATAATACATTGATGATAACGCTTGATGATTTTTTGTTGTATATTTCCTTCCATATGTTAGCATTTTCATTTGTATCAGAAAGTCCATGTATTTATTGACT
GGACAGATGCTTAAGCCATATTGTTTCTTCCTTTTCTTTTTAAAAATATATATATAATATACTTCTAATCTTTCTTGTAGAGATGTGGTCTTGCTATGCT
TGTTTTTTTTTTAAATTTTTTTTTTTTTTCCTATTCTCACAATCTGTTCTCACAGTCTTCCTATGTTGCCCAGGCTGGTCTCAAACTCCTGACCTCTGCG
ATTCTCCAAACTCAGCCTCCCAAAGTGCTGGGATTCCAGGCTTCCAGCCCGTATTCTCATTTAAAATTAAGATCTTAACATTATATTGTTATATATTTAA
AAGGTAAAAAAAAATTTATAAAAACCAGTTTTCACTATTTTCACAGTCATAAACAAAATATATTACCCATATCGACTATAGCAAGAACTAATTTATTAAG
ACATTAAACACATACAAACATACATATACATACCAATAGATAAGGAGACAAACTATATTTTCAAAACATATTTAGTCTCCTTGAAGTTTGTGTATTTGGC
AAAAAATAAAAAGTATATGTGTGTATATATACATATGTGCATATATTTTTTTTAACTGGGCAAGTCTTCCTGATAAATGACATATTCTAGAGTGTCCCTT
CCACACACCAGCAGTGAAAATCTGTATCACTAGTGTATTGTTTTCACAGTATTTCTTCGTGTTTACTCTGATGAGACTGTCACCACCAAGAGCCCCAGTT
ACACAAAACCTCAACTTTTCCAATTATTCACTGAATTTCTACTCTAGGATTTCACTTGAGGGGTTGGGGACAGAATGGCCCCAGAGGCAAAGACATGATT
CCCTTTCTAAGTTAGGCTTGTGACCCACGTCTTAGGGGCACTAAGTTAAGAATTTGCCATTTAAAAAGTAAATTTGGTTTCAGATGGCTCTGTTTTTGTC
TTCTACCTATCCACACTCATTAGTAGATTTTTATAAACCTGGAGGGAATTTGTACTCATGCTGAACAATAAGGTTAAAAGGTTAAGCATATATAAAGATT
CTAGGAAATAGTAAGATTTTCTTCATTTGCCCAGAGAAACAAGTAAGTATGGTACTCATGGCTTCTGTTTAGTAAAGTGTGTTTCCCAATGTAATGATGT
CTAACCAGAACAATTCAAGGAACCATCAGAAGAATAGGGAAACGACATTGAATTTAAGTTCTAAAATTTTAATAACAGAAAAGCAAAAAAGACATGACTT
CATGTTGCATCAAGGGAAATGGCAGATATTCTTTTCTTCTTATAAGACAATCAGTATGTGAGCGTTAAAAAAAAAAAAAAAAAAATCAAGCCTCTTAAAA
GCCCTGTCCTGACAGTTTATGATTTTATATAAAGGGAAAATAAAAATTCTAATAGGAATTCATCTTGTCAACATTAAAAGGAACGGAAAAAAAAAACTAT
CTTGTTTGACATTATTTACCATACTACAATACTACATAGACAGTA

Expression



Full and truncated open reading frames discovered in TCONS_00251973

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.