Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000263026 | eukaryotic elongation factor-2 kinase | protein coding | TCONS_00042291 | 667 | 295 | UTR3 | Trans | |
ENST00000263955 | serine/threonine kinase 17b | protein coding | TCONS_00042291 | 632 | 289 | UTR3 | Trans | |
ENST00000527227 | NAD synthetase 1 | retained intron | TCONS_00042291 | 509 | 221 | noncoding | Trans | |
ENST00000530055 | NAD synthetase 1 | protein coding | TCONS_00042291 | 509 | 221 | UTR5 | Trans | |
ENST00000553936 | gephyrin | nonsense mediated decay | TCONS_00042291 | 513 | 293 | CDS_UTR | Trans | |
ENST00000569455 | cadherin 13 | processed transcript | TCONS_00042291 | 522 | 294 | noncoding | Trans | |
ENST00000579685 | adenomatosis polyposis coli down-regulated 1 | nonsense mediated decay | TCONS_00042291 | 502 | 287 | CDS | Trans | |
ENST00000583694 | FYVE, RhoGEF and PH domain containing 4 | protein coding | TCONS_00042291 | 514 | 296 | UTR5 | Trans | |
ENST00000593250 | centrosomal protein 76kDa | nonsense mediated decay | TCONS_00042291 | 582 | 296 | UTR3 | Trans | |
TCONS_00025758 | zinc finger, MIZ-type containing 1 | novel protein coding | TCONS_00042291 | 601 | 297 | UTR5 | Trans | |
TCONS_00025760 | zinc finger, MIZ-type containing 1 | novel protein coding | TCONS_00042291 | 601 | 297 | UTR5 | Trans | |
TCONS_00025761 | zinc finger, MIZ-type containing 1 | novel protein coding | TCONS_00042291 | 601 | 297 | UTR5 | Trans | |
TCONS_00037379 | NAD synthetase 1 | novel protein coding | TCONS_00042291 | 509 | 221 | UTR5 | Trans | |
TCONS_00037380 | NAD synthetase 1 | novel protein coding | TCONS_00042291 | 509 | 221 | UTR5 | Trans | |
TCONS_00065093 | UBA domain containing 2 | novel protein coding | TCONS_00042291 | 608 | 285 | UTR5 | Trans | |
TCONS_00065094 | UBA domain containing 2 | novel protein coding | TCONS_00042291 | 608 | 285 | UTR5 | Trans | |
TCONS_00065103 | UBA domain containing 2 | novel protein coding | TCONS_00042291 | 608 | 285 | UTR5 | Trans | |
TCONS_00067572 | DCN1, defective in cullin neddylation 1, domain containing 2 | novel protein coding | TCONS_00042291 | 615 | 294 | UTR3 | Trans | |
TCONS_00083866 | RAB27A, member RAS oncogene family | novel protein coding | TCONS_00042291 | 602 | 304 | UTR5 | Trans | |
TCONS_00089062 | eukaryotic elongation factor-2 kinase | novel protein coding | TCONS_00042291 | 667 | 295 | UTR3 | Trans | |
TCONS_00089065 | eukaryotic elongation factor-2 kinase | novel protein coding | TCONS_00042291 | 667 | 295 | UTR3 | Trans | |
TCONS_00089066 | eukaryotic elongation factor-2 kinase | novel protein coding | TCONS_00042291 | 667 | 295 | UTR3 | Trans | |
TCONS_00098644 | fatty acid 2-hydroxylase | novel protein coding | TCONS_00042291 | 603 | 287 | UTR3 | Trans | |
TCONS_00098645 | fatty acid 2-hydroxylase | novel protein coding | TCONS_00042291 | 603 | 287 | UTR3 | Trans | |
TCONS_00098647 | fatty acid 2-hydroxylase | novel protein coding | TCONS_00042291 | 603 | 287 | UTR3 | Trans | |
TCONS_00107851 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | TCONS_00042291 | 614 | 286 | UTR5 | Trans | |
TCONS_00107851 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | TCONS_00042291 | 615 | 279 | UTR5 | Trans | |
TCONS_00107864 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | TCONS_00042291 | 615 | 279 | UTR3 | Trans | |
TCONS_00109427 | serine hydroxymethyltransferase 1 (soluble) | novel protein coding | TCONS_00042291 | 620 | 292 | UTR3 | Trans | |
TCONS_00119512 | zinc finger and BTB domain containing 7C | novel protein coding | TCONS_00042291 | 606 | 295 | UTR3 | Trans | |
TCONS_00119961 | ring finger protein 152 | novel protein coding | TCONS_00042291 | 603 | 297 | UTR5 | Trans | |
TCONS_00137691 | FOS-like antigen 2 | novel protein coding | TCONS_00042291 | 609 | 290 | UTR5 | Trans | |
TCONS_00141404 | GLI family zinc finger 2 | novel protein coding | TCONS_00042291 | 664 | 278 | UTR5 | Trans | |
TCONS_00141670 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | TCONS_00042291 | 602 | 300 | UTR5 | Trans | |
TCONS_00141673 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | TCONS_00042291 | 602 | 300 | UTR5 | Trans | |
TCONS_00141679 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | TCONS_00042291 | 602 | 300 | UTR5 | Trans | |
TCONS_00142174 | LY6/PLAUR domain containing 6B | novel protein coding | TCONS_00042291 | 621 | 298 | UTR3 | Trans | |
TCONS_00147093 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00042291 | 660 | 302 | UTR3 | Trans | |
TCONS_00147093 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00042291 | 638 | 294 | UTR3 | Trans | |
TCONS_00147100 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00042291 | 620 | 302 | UTR3 | Trans | |
TCONS_00147100 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00042291 | 638 | 294 | UTR3 | Trans | |
TCONS_00147106 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00042291 | 638 | 294 | UTR3 | Trans | |
TCONS_00147113 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00042291 | 620 | 302 | UTR3 | Trans | |
TCONS_00147115 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00042291 | 620 | 302 | UTR3 | Trans | |
TCONS_00153158 | serine/threonine kinase 17b | novel protein coding | TCONS_00042291 | 632 | 289 | UTR3 | Trans | |
TCONS_00160558 | cerebellin 4 precursor | novel protein coding | TCONS_00042291 | 530 | 292 | UTR3 | Trans | |
TCONS_00173729 | cms1 ribosomal small subunit homolog (yeast) | novel protein coding | TCONS_00042291 | 643 | 298 | UTR5 | Trans | |
TCONS_00185321 | transferrin receptor | novel protein coding | TCONS_00042291 | 614 | 289 | UTR5 | Trans | |
TCONS_00194652 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | TCONS_00042291 | 611 | 291 | UTR5 | Trans | |
TCONS_00194655 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | TCONS_00042291 | 611 | 291 | UTR5 | Trans | |
TCONS_00202828 | myotubularin related protein 12 | novel protein coding | TCONS_00042291 | 601 | 296 | UTR3 | Trans | |
TCONS_00224726 | caldesmon 1 | novel protein coding | TCONS_00042291 | 532 | 290 | UTR3 | Trans | |
TCONS_00224728 | caldesmon 1 | novel protein coding | TCONS_00042291 | 532 | 290 | UTR3 | Trans | |
TCONS_00233718 | pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 | novel protein coding | TCONS_00042291 | 623 | 292 | UTR5 | Trans | |
TCONS_00251973 | G protein-coupled receptor 34 | novel protein coding | TCONS_00042291 | 609 | 288 | UTR3 | Trans |
>TCONS_00251973 (6144 nt)
GCGTATTGCTGAAAAGTGCGCCCTACGAAAGGACGGTCGACTTCGGCGGGGCCCAGGTGAGAAAGGCCCACCTGTGTCCTGGTTGAGGGTCTCCAGGGTT
CTTTGGGGCCCGAGGTGCCAATGGGTCATGTTTGGTTAGAAGGTGACAATCTACAGAATTCTACAGATTCCAGGTGCTATGGACCTATTCCATATGGACT
AATAAGAGGACGAATCTTCTTTAAGATTTGGCCTCTGAGTGATTTTGGATTTTTACGTGCCAGCCCTAATGGCCACAGATTTTCTGATGATTAGTAAGCA
TTTATTCTTTTGACTTGATTATTGTCTCCTTTTCATGTGAATTTATTACTCCCGTTGAAACCGTGTACTTACCAATAAACTATTTGCTATTCAGTTTTAG
TTGTTTTTAATTGTTAAATGTAAAGAATATTCAACACACATTCTGCCAAGTTCTGTTAGTTCAAAATATATGGATAAAAATGTAACCCAAAAAAGTCATC
TAAATTTTATGATACAAAAATATTGTGGGAGGGGGAACCTGGATGACTACCTCACTTTTGAATTCTTGTTCTTATAGGTATAATGAAACTAATCTATTCT
TCTTAAATATACCTCATACTTTAGCAGCTACATTTACAAGTCAGAGTAGTAACTATTCGTATTTATAAGTTCAACCTGACAATGCCAGGTTTGATAAAAA
GCTGCTAGTCTACATGCTCAGCCCACTCATTTGAAATTAAGTAAAAATGTTTCTAAAGGATCCCTTAAAGTTCTTTAAATGAGTTCTGACTTTTACTGTA
CACAAAATATTAAATACATAGAAAAATGCATCTTTAAGGCATATGCCATCTGTAGTTGGCTATAGTCAATAATACTTTATAAAAGTTCATTTCAGCATAG
CAGCAGTGCAATGGCCCTGTCTTCATAAATACAGGCATTAATACTATATCTTTTTTTATTTATTTTATTTTATTTTTTTTGAGACAGAGTCTTGCTCTCT
GTAGCCCAGGCTGCAGTGCAGTGGCACAACCTCGGCTCACTCTGCCTCCTGGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCGAGTAGCTGGGACCACAG
GCAGACACCAACGTGACTGGCTAATTTTTAAAAAAATTATTTTTAGTAGATATGGGGTTTCACCATGTTGGCCAGGGTGGTCTTGAACTCCTGACCAAAG
GTGATCCGCCTGCCTTAGTCTCCCAAAGTGCTGGGATTACAGATGTGAGCCACCATGCCTGGCCCCAATATTATATCAACACTCCAAAATAAAAGGGGAA
ATAATGCACCAACTTCCAAGTCATTATTTTTAAAAAAGCTTCTGGCCAGGCATGGTGGCTCACGCCTGCAATCCCAGCACTTTGGGAGGTTGAGGTGGGC
GGATCATTTGAGGCCAGGAGTTCAAGACCAGCCTAGCCAACATGATGAAATCCCATCTCTATTAACAAAACTTAGGCCAGGCACGGTGGCTCAAACCTGT
AATCCTAGCACTTTGGGAGGTCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGGAACCCCATCTCTACTAAAAAT
ACAAAAATTAGCTGGGCATGGTGGTGGGCACGTGTAATCCCAGCTATTCGGGAGGCTGAGGCTGGAGAATCACTTGAACCCAGGAGACGGAGGTTACAGC
GACCTGAGATCATGGCACTGCACTCCAGCTGGCGCGACAGAGTGAGACTCTGTCTTAGAAAAAAGAAATTAAAATTAAAAGCTTCCATTTCCTAAATTAC
ATTTAAATTTGAAGATGGCAGTGTTTACAAGCTTTGGAAATACGGACCAAGATTGGAGGCAACACTTTCTACAGTTGCCACTTTGTCTTTATTAACTTTG
AAATAACCTTATGAATATCCATAACCAGCCTTCCTTATGGAAGAACTGGCCTCACATTATTCACAAAGATTCTAGGTGTACAACAGCCCCATAACTTTAG
CAACTAGAAACGTTATCGGTTAGACCAGAAACTTAGTAACTATAAAGGAATATGATGATACTGTTACCCACTGAAAAGAGGAGACATGCTCATATTAAGA
AAATTCTTATTTTGTGTCATGGAAAAAAATGACATAATAAAGTTCTCAGATGGGAATTCACCAAATATAATCAAATCTATTTTTGTGACAACTTGTAAAT
ATAAATTATAAATACAAATAAATAATTATATTCATTCTCTATTAATCTGAGGTGGTCTCTGCTTGATAATTGTATATTTTCTTTGCAAATAATCGGGCTG
ACAAATAATCCATTTCCTTGAATGGACAAAGCTCAACGGCTTCTCATCATGTCTCAATACCACAGTTAAAGCATTTCAAGTTGTGAACAATTTTAGTTAT
AATGAAGGAGTTCTATAATTAGTGAACATGTATCACAAGAAATCAGGCTAACTTCTTCCGCTTCATCCTTGGAAACACTGTATTTTCCACCACATCTGCA
ACTCAGATAAAAAGAGTGATCACCTGCAAAAGAAAACAAAATAATCTTTCAAAGACTTGTAAGTAACTACCTCACTAATACCCTTAAAAGGTGCAGAGTT
TATTCCATAGGAATTGTAAAACAAAACAAAGAAGCTCAGTAAAGATAAAATGTATTTAAAGGAGAACTGGATTTCTTGAAAGGGGCAGTGTTTCTAAAAA
TTATCTACCAAAGAATCTTTCTCTGTAGAGGAGATGGGTTGAAGCTATGAATTAAAAGTCCAAGGATTTTGGGAGGAGAGGGCATGCTCAGAAGTAACCC
ATGAAACTTATTTGAAGTTTTATGTTTTCTTAAAATTCATATAAATTTTACATTCTTTTCAACAATGTATTTGTCTAAAATATTACAGTGAAGGAAAAGA
AAAACAGCCCTACCTGTCTCACTGTTAGGGAGGATGATGCTTTTGCCTGAAGTCTATCCTTTAGAGAAAGCCAGACTATTTATCAAATGCAACATCTGGA
TACTTTCTCTTCTAGTGTCACACTATTTCAAGAATCTTGACTTAAGTCTATAAACACAACACCATGTTGTTGTTGTTTTTTTAAATCCTATGGGGGTATG
TGTGTGTGTGTTTGATGTTTACAAATGATACATGAACCAACAAGATGCTGAAGTGAGATGCCCAAAGGAGGCAATACGGTGCAATACTTAGGCTCCTGAT
CGTGGAAATTTTAAGTGTGTCATTTTCCTGGGAAGTTGAAATGCTTGTGCCCTTTGACTTAAAGAATCTCTGATCCATTGGTCATTCCATTTTACTGTCT
CTGAGAAGTAACTGTCAAAGGAAAATAACTTATCAGTCACATTATTTTACCACCATTATAATTGATTATTACATAAATAAGTCTCAAAGGACTCATGATT
TCATACAAATATCTTCATTCCATTATCAAATTTGATTAATACTTAGATCGCATCATATGTAGTTTAAAAAAGAAAAATTCCACTGCCTTGTACCTGCTCT
CTTATCAAGTTCAGCCTTGGAAAAACTGGCAATTAAATAAGCTAACTTTATGTGTTTTTTTTTTTTTTAATCAGTAAGGAAAATGAATTCATTCACCTAA
TCCAGCTTTTTATTCTTTACCACAATGCCTTTGCTCTCCATACAGAAAAATAATTTAATCTTGAATTCCAAATGCAAACATCTTCCCTGTCTAAGCCAAC
ATCTATGTACTACAGCATGTTCTGAAAATGAATTTTTTTATTATTAAATTGTCTAAAAAGATACATATTCTAACCATTGATTTTCCTAAGCTAAATCTCC
CCCTACCCCCTTGTTTTTCTACTACCTCAGTGAACCCTGAAAAACAATTTGAGTTGACATGTTCTTGGTAAATGACACAGAGGACACCATGGGCTACTGT
GGAGTTTTGTCATAGATGACTCCAAATGTTAATGCTCACTAAAAATTCACATCTTGTAAAAGTTCTGCTTATATTATTATACCATCAATCTTTTAACCAG
GTGATAACTTTTACAGAAATCATCATTTTAAATACTCTGAATGAAGGCCAACAAAATGACCAAGGCATATAACAGACTAACTGTAAGGGCAAAGATTAGC
TTCAATATCTGAACAACTCACATATGCCTTTTAAGCATAATAAAATGCATCATTTCATACTGCCCTTTGATCAGGCAACCAACAATTTGGCTATGTCTAT
CCTGTAGGGTTTCATGAACTTTTCTCCTGTTCTGGAGCTTCACTTTCCATAGCTATTCTGCAAATGATCCTAAAGGGATCTTCAAACAAATTTTTCCTTT
CCTAGTTGATCACACTTTTTATTTAATTTCATCTGCCAAAATTGCTCTTTTTAATTGGAAAAAAAATTTAGCTCAAAACTTCCATGATTCGTTTTTAAGT
ATTTCTACAAGAATAATGGTTTCATGTAGCTCTTGCTCAGTATTTTCTCTCATTAAGATAAGAATTATTTCCATCTTTAGTTATGAAAACCTAAGCGTCT
AAGGGCATCCTATACTTTTAAGATTAACTGTATTGGCTATGGATGGGATTCTTCTATATCTTCTTTACTGTCAAATTTACTTTAGGGAGTTCCAGGGGCA
ATAATACATTGATGATAACGCTTGATGATTTTTTGTTGTATATTTCCTTCCATATGTTAGCATTTTCATTTGTATCAGAAAGTCCATGTATTTATTGACT
GGACAGATGCTTAAGCCATATTGTTTCTTCCTTTTCTTTTTAAAAATATATATATAATATACTTCTAATCTTTCTTGTAGAGATGTGGTCTTGCTATGCT
TGTTTTTTTTTTAAATTTTTTTTTTTTTTCCTATTCTCACAATCTGTTCTCACAGTCTTCCTATGTTGCCCAGGCTGGTCTCAAACTCCTGACCTCTGCG
ATTCTCCAAACTCAGCCTCCCAAAGTGCTGGGATTCCAGGCTTCCAGCCCGTATTCTCATTTAAAATTAAGATCTTAACATTATATTGTTATATATTTAA
AAGGTAAAAAAAAATTTATAAAAACCAGTTTTCACTATTTTCACAGTCATAAACAAAATATATTACCCATATCGACTATAGCAAGAACTAATTTATTAAG
ACATTAAACACATACAAACATACATATACATACCAATAGATAAGGAGACAAACTATATTTTCAAAACATATTTAGTCTCCTTGAAGTTTGTGTATTTGGC
AAAAAATAAAAAGTATATGTGTGTATATATACATATGTGCATATATTTTTTTTAACTGGGCAAGTCTTCCTGATAAATGACATATTCTAGAGTGTCCCTT
CCACACACCAGCAGTGAAAATCTGTATCACTAGTGTATTGTTTTCACAGTATTTCTTCGTGTTTACTCTGATGAGACTGTCACCACCAAGAGCCCCAGTT
ACACAAAACCTCAACTTTTCCAATTATTCACTGAATTTCTACTCTAGGATTTCACTTGAGGGGTTGGGGACAGAATGGCCCCAGAGGCAAAGACATGATT
CCCTTTCTAAGTTAGGCTTGTGACCCACGTCTTAGGGGCACTAAGTTAAGAATTTGCCATTTAAAAAGTAAATTTGGTTTCAGATGGCTCTGTTTTTGTC
TTCTACCTATCCACACTCATTAGTAGATTTTTATAAACCTGGAGGGAATTTGTACTCATGCTGAACAATAAGGTTAAAAGGTTAAGCATATATAAAGATT
CTAGGAAATAGTAAGATTTTCTTCATTTGCCCAGAGAAACAAGTAAGTATGGTACTCATGGCTTCTGTTTAGTAAAGTGTGTTTCCCAATGTAATGATGT
CTAACCAGAACAATTCAAGGAACCATCAGAAGAATAGGGAAACGACATTGAATTTAAGTTCTAAAATTTTAATAACAGAAAAGCAAAAAAGACATGACTT
CATGTTGCATCAAGGGAAATGGCAGATATTCTTTTCTTCTTATAAGACAATCAGTATGTGAGCGTTAAAAAAAAAAAAAAAAAAATCAAGCCTCTTAAAA
GCCCTGTCCTGACAGTTTATGATTTTATATAAAGGGAAAATAAAAATTCTAATAGGAATTCATCTTGTCAACATTAAAAGGAACGGAAAAAAAAAACTAT
CTTGTTTGACATTATTTACCATACTACAATACTACATAGACAGTA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.