Detailed information on TCONS_00044170

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00044170 674 479 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00044170 647 480 UTR3 Trans

Sequence

>TCONS_00194686 (4360 nt)
CTCATTTTTCTACTGCTCGTGGTAAGTGGCTTCGTGGTCTTTATAGCTGTTACTCTTTTGTACTTTGTCTTTTTCTTTTATTTTCTTTTGAGCGATTGTG
CGAACATAGCATAGCACGCACTATGCCTTCTGTGTTGTAGCTGCCTGGCCAGGGCGACTGGCGGATAAGGTCTTGTGCGTGGCCTCGAGGCTTAAAAGTA
GCAGTGGGGCTTTGTGAAGGACAAAATGGCGATGGCGGGCCGTGTAGGTCCCCCTTCCTATGATGAGGACCTTTTCACAGACCTGTACTGAGCTCCGTGA
GGATAAATAACTCTGAGGAGATGGGCCCTGCAAGCCTCTTGCTTAGCCGTCTGTTCAGAAAATAGCGTTTTCGAAATGCCCTGAGTTGACCTAATGTCTT
ATTGGGCTCCTGTCTGCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCAATGTTCAGCCCACAAGAGCTTACTGGTGAAGGAATGGG
ACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGGTAGGTGTACATGGTTTATGCTCTTACAGAGGAGACCTTGTAGATAACCACTCC
ATGATGAACACAAAATGACAAGCATATGGCTGAACTTTCAAGTGATGTCATCTTACTACTGAGAAGTGAGAGAGAGGTCTTAAGGGGTCTTTGAATGACT
ATTTTTAGGTACATAAAATGCTTTCCTCTGTTGTCTACAGCATCTCATAATCTATCCTGGGGAATTCAGCTGCCTCCCAGGGTGAATACAGGTAATTATC
CAAATTGGTGTATGTCATCTTTGTAAATGTTCAAGAAAACAAGTGGCCGGCGGAACAATGTTTTTTGGCGCCTTCCATCTTGTTCCTCTTGAAATGATTT
TCTGGGGAGGGAGATCGCAACCCGGTACTACAGTTCTTGTAAGGGTGTGCTGTTACCCTCATCCATATATCGATCACGTTACTGTCAGATGATTTGAATT
GATAAGCTGATGTTCTGTGAGGTACAAAAGTTAATAGCATGTTAGAGTTCTGATGGCAGTTGTTGTTTATGAATAAGCTTCATTCCATCCTAATACCTTA
AAATAACTAATTTGCTTTCCTTTCCAGGTATTCCTGATGACAGTCTGCCTCTATCTTACAGTAAGTTGTTTTTCGAATTCTATGGGCCTATTATCTAATA
GATAACTTAGCCATTTTGATATTTGTTACCAAAGCCTGCTTAACCCATAAAGTTTTCTGGTTCCTCTTGTTCTCTGTAGTGATGTTTCTAGATAGATGCC
CACTGATATATGCCCCTTTTTTCTCAGATAGATGCCCACTGATCTGCCCAGGGTCAGACGAATGCTTGTCAGTTGTAGCTTTCCAGGATTCTGCTCCAAT
GAGGAGGAAACATCCTGCCTTACCCCTGTTTTAGCCTGGGAACCAGTAATTGTGAACTCACCAGGGTTAACATGAAGAGGGCATGAGAGCTTATTCCATA
AGGAATTGTCTGAGACATTTGGTTACCTTTTCTTAGTTTGTCCATTAGCAACCGTAACTAAAATAGTTTTGGCTGTTTGGGATAATTAGCTAATTGAATG
ATTTTTTGATTCAGGAGCAGCTTGTTGCTATATACCATTGAAAAGCCTTCAGAGCTGAGAGGTTAGTTGATATTTTTTGTTCCTTACAGCTTATGCCACC
AAGTAGGCAGTTTCTATGATGAATCAAACTAGCTCACTATGACCGACAGTGAAAATACATGAACACCTGAGAAACTGGAGAACGCAGGGAGTGGGGGGTA
ACCATGTCTGAGGAATCTTTCACCCACAGCTTTGTTTTTCTCTAGGTACTACTAACCAATAACCTGCTTGGCTCAAAGGTGAGTAATTTCACGGTATTCA
ATGCACTCAGTATATAGGGTAGGAAAAAGTGCCTTTTTAGGCCTGTGTTTGTGATGACTTACATGGAATCTCGTTCGGCTGATGACTTGCTGTTGAGACT
CTGAAATCTGATTTTCTGAGAATGATGGGTGGGAACAACATAATGCGGGATATGAGAAGCACTACTGACTTGGTCTTCCTCCTTTCAGGGCCAGCACCTT
CTCTCTAAAGCCCAAGAGGAGTTTGAGGTAAATGGCTTTGCAATAGTTACCATCAATGGCTGCTATATAAAATTTTCTGTGATTTTTGTGTGTGATAGCA
CTGTGGTCTGGGTGAATGTACACAGACATAACTGGCTTAACCCAAAGTCTTTGATCTCCTGAACCACCAGTGATGAATTGCTGCTCACCAGTGATGAGTT
GAATACCGCCCCAGTCTGATCAATGTGTGACTGAAAGGTATTTTCTGAGCTGTGAGCCTGCCTTCCAGTGACATGTTCTAAAAATTGCAAGTTATTTGAG
GAGGCTTTACAGCCAATAGGAAGTTCTTGGGCTAAGTAGTGTTTCCTATAAAATGTGCCCTGAAACTTCTTTCTGCCAAGCAATAGATACAATTGAGAGA
TTGTAAAATGTGACATAGAATGAAAGTCTCTCAAGACTACATTTTTCTTTCTTGATTTTGCAGGAAAACTAGGTGTCTGTGTTCACTCCAGGCTGAAGTT
ACAGGTCTGAGCAAATAAGGTGTATAAAAAATGGAATCTGTCTTGGAGGACATCAGAAGGTGAATTTTCCAAGTTCTTGGACAACCTAGCTGTTGAAAAG
CTTTCTGGGTTTGGGGGGTATTTCAGATGTACCTTAAAGTGTTAGCAGACACAGATTAAGACACTGGGAGCCAATGAAACAGCAGTTGAGGGTTTGCTGT
GTATCACATTTCTGTATTTTATCACCCCCTTCCTGCAACATTATTTATCTGGAATCTACCTGCCCTTTTGTTTTTTAGATACAAGGGCTTGGTTTTGTTA
CCCAGGCTGGTTTCAAGGCCATAGCTTTAAGAGATCCTCTCACCACAGATTTCCAAAGTGCTGGGATTGCAGGTGTGATTCATGGCACCCAGACTTTGCT
GCCTTTCTTACATGATCCAGGCCCAGAACCCAAACTCAGGCACTGTATAGATGACCACTTTCGTAAACTACTGACCTAGCTTGTTGCCAATTGTTGATTG
AACTTCCCATAACTCCACTTCGTGTCTGTTCCTCTGTATACAGCCACCTTCTGTTCCCGTCATGAGCCTTTAGGTCTCCATTTGCATATTGCAAATACTA
TGTTCCATGTAGGTAGCTCATTCAGGGCCTTGCTCTTCACTTCAAAAAAGGTTCCCTTGAGGACTGGCTGTCAATTTGTGTTGCTGTGTTGGTTGTTGAT
GAAAATAATAAAATGATTGATTACATAGTCCTGTTTACTTTTTTTGTGTGTATGTGTCTCTTAGCATCAGTGTGTAAATTTCCATGGGAAACTGGCTTTC
CTCTCATGCTCCCTGAAGTACCTGGAACTTGAAGGGACATCTGACAGTTTGCCTGATAGGCAGTGTGTTAAATGAGTAACCTGAGTAGAACATCCATCTT
TTTTTTTTTTCTCTTGCCTAGTCTTAGAGTACAGTGACATGATCACAACCTCACTGCAGCTTCAAGCTTTTGGGCTTAAGCAAACCTACTTGACTTTAAC
CAGCAGCTGGGGCTGGGACTACAGACACCACACCCAGCCCAAATCTGTTTTTTCCTGGGGGAAGCAAGGGACAATGGAGTCAAGCTGGAGTGCAGTAGTG
CCATCTCGCCTCCCTGCAGCCTCCACCTGGATTGAGTGATTGTCCTGCCTCAGCCCCGAGTAGCTGGGATTGCAGATACCTGTCACGAAGCAAGCCTAGT
TATTGGGATTTTAGTAGAGGTTTCACTATGTTGACCAGGCTTAGTCCTGACCTCAAGTGATCTGCCTGCCTCCCAAACCTGTGCCTTTTTTTTTTTTCTG
AGGTGGAATCTCGTTCTTGTCACCCAGGCTGGAATGCAGTGGCATTATCTTGGCTCACTGTAACTTCACCACCTGGGTTCAAGCCATTCTCCCTGCCTCA
GCCTCCTGAGTAGCTGGAACTACAGCCGCATGCCACCACACCCGGCTACTTTTTTGTATTTTTAGTACAGATGGGGTTTCACCGTGTTAACAGGATGGTC
TCGATCTGACCTCATGATCCGCCTGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGTGGGAACCACTGCACCCAGCCAAATTATGCTTTTTATTTTATTT
TTTTGAAACGGAGTTTCTCTGTTATTTCCCAGGCTGGAGTGCAATGGCAGGATCTCTGCTCACCGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTG
CCTTAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCATGCCTGGCTAATTATTGT

Expression



Full and truncated open reading frames discovered in TCONS_00194686

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.