Detailed information on TCONS_00044171

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00044171 674 479 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00044171 647 480 UTR3 Trans

Sequence

>TCONS_00194686 (3763 nt)
CTCATTTTTCTACTGCTCGTGGTAAGTGGCTTCGTGGTCTTTATAGCTGTTACTCTTTTGTACTTTGTCTTTTTCTTTTATTTTCTTTTGAGCGATTGTG
CGAACATAGCATAGCACGCACTATGCCTTCTGTGTTGTAGCTGCCTGGCCAGGGCGACTGGCGGATAAGGTCTTGTGCGTGGCCTCGAGGCTTAAAAGTA
GCAGTGGGGCTTTGTGAAGGACAAAATGGCGATGGCGGGCCGTGTAGGTCCCCCTTCCTATGATGAGGACCTTTTCACAGACCTGTACTGAGCTCCGTGA
GGATAAATAACTCTGAGGAGATGGGCCCTGCAAGCCTCTTGCTTAGCCGTCTGTTCAGAAAATAGCGTTTTCGAAATGCCCTGAGTTGACCTAATGTCTT
ATTGGGCTCCTGTCTGCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCAGTAAGTTCTTACGGCCATTTCTTAATCTCTGCTCTTTC
GTTGAGTGTGTGGAAGTTGCTACGGGGATGATTTTACGAACTGAACTCTCTCTTTCTGATGGATTAGTGGAGAAAACAGAAAATTCTGAGTAGCACTGTA
CTGTACGCAACAAATGTCAGGGCCCTATTGATTTGTCTGAGGTGTTAGTGAAGGGTGTTATTTTTTCAGATGTTCAGCCCACAAGAGCTTACTGGTGAAG
GAATGGGACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGCATCTCATAATCTATCCTGGGGAATTCAGCTGCCTCCCAGGGTGAAT
ACAGGTATTCCTGATGACAGTCTGCCTCTATCTTACAGAGCAGCTTGTTGCTATATACCATTGAAAAGCCTTCAGAGCTGAGAGGTACTACTAACCAATA
ACCTGCTTGGCTCAAAGGTGAGTAATTTCACGGTATTCAATGCACTCAGTATATAGGGTAGGAAAAAGTGCCTTTTTAGGCCTGTGTTTGTGATGACTTA
CATGGAATCTCGTTCGGCTGATGACTTGCTGTTGAGACTCTGAAATCTGATTTTCTGAGAATGATGGGTGGGAACAACATAATGCGGGATATGAGAAGCA
CTACTGACTTGGTCTTCCTCCTTTCAGGGCCAGCACCTTCTCTCTAAAGCCCAAGAGGAGTTTGAGGTAAATGGCTTTGCAATAGTTACCATCAATGGCT
GCTATATAAAATTTTCTGTGATTTTTGTGTGTGATAGCACTGTGGTCTGGGTGAATGTACACAGACATAACTGGCTTAACCCAAAGTCTTTGATCTCCTG
AACCACCAGTGATGAATTGCTGCTCACCAGTGATGAGTTGAATACCGCCCCAGTCTGATCAATGTGTGACTGAAAGGTATTTTCTGAGCTGTGAGCCTGC
CTTCCAGTGACATGTTCTAAAAATTGCAAGTTATTTGAGGAGGCTTTACAGCCAATAGGAAGTTCTTGGGCTAAGTAGTGTTTCCTATAAAATGTGCCCT
GAAACTTCTTTCTGCCAAGCAATAGATACAATTGAGAGATTGTAAAATGTGACATAGAATGAAAGTCTCTCAAGACTACATTTTTCTTTCTTGATTTTGC
AGGAAAACTAGGTGTCTGTGTTCACTCCAGGCTGAAGTTACAGGTGAGTAAACCTAAATGTAAGGTGGACTATGCTAAAAATTCCCAATGAAGAAACTTT
CACATGTCTTACTCTCTGTCCTAGTCCCAGAGCCTGTAAAGGTGAACCCACTGGGACTGGCTGGGGGAGAAGAGGAAGATTTGTTCCAGAAGGAACTGTC
TGAGGGATGATAAAGATTTCTATACAGAGAAAGGGAGTAATCATCACTTGTTGAAAACATTGGTTTTATTTTTTCCAGGTCTGAGCAAATAAGGTGTATA
AAAAATGGTAGGTATCTGTTTAAATATTTAACTGATTTTATAATAGCAACCTTTTGCTCCTAGGTTACATAGTGTTAAATATTGTGTTCATTTGTATTTT
CCAATCCAATAAGAACTTTTTTTTTTACCTCTGCAGGAATCTGTCTTGGAGGACATCAGAAGGTGAATTTTCCAAGTTCTTGGACAACCTAGCTGTTGAA
AAGCTTTCTGGGTTTGGGGGGTATTTCAGATGTACCTTAAAGTGTTAGCAGACACAGATTAAGACACTGGGAGCCAATGAAACAGCAGTTGAGGGTTTGC
TGTGTATCACATTTCTGTATTTTATCACCCCCTTCCTGCAACATTATTTATCTGGAATCTACCTGCCCTTTTGTTTTTTAGATACAAGGGCTTGGTTTTG
TTACCCAGGCTGGTTTCAAGGCCATAGCTTTAAGAGATCCTCTCACCACAGATTTCCAAAGTGCTGGGATTGCAGGTGTGATTCATGGCACCCAGACTTT
GCTGCCTTTCTTACATGATCCAGGCCCAGAACCCAAACTCAGGCACTGTATAGATGACCACTTTCGTAAACTACTGACCTAGCTTGTTGCCAATTGTTGA
TTGAACTTCCCATAACTCCACTTCGTGTCTGTTCCTCTGTATACAGCCACCTTCTGTTCCCGTCATGAGCCTTTAGGTCTCCATTTGCATATTGCAAATA
CTATGTTCCATGTAGGTAGCTCATTCAGGGCCTTGCTCTTCACTTCAAAAAAGGTTCCCTTGAGGACTGGCTGTCAATTTGTGTTGCTGTGTTGGTTGTT
GATGAAAATAATAAAATGATTGATTACATAGTCCTGTTTACTTTTTTTGTGTGTATGTGTCTCTTAGCATCAGTGTGTAAATTTCCATGGGAAACTGGCT
TTCCTCTCATGCTCCCTGAAGTACCTGGAACTTGAAGGGACATCTGACAGTTTGCCTGATAGGCAGTGTGTTAAATGAGTAACCTGAGTAGAACATCCAT
CTTTTTTTTTTTTCTCTTGCCTAGTCTTAGAGTACAGTGACATGATCACAACCTCACTGCAGCTTCAAGCTTTTGGGCTTAAGCAAACCTACTTGACTTT
AACCAGCAGCTGGGGCTGGGACTACAGACACCACACCCAGCCCAAATCTGTTTTTTCCTGGGGGAAGCAAGGGACAATGGAGTCAAGCTGGAGTGCAGTA
GTGCCATCTCGCCTCCCTGCAGCCTCCACCTGGATTGAGTGATTGTCCTGCCTCAGCCCCGAGTAGCTGGGATTGCAGATACCTGTCACGAAGCAAGCCT
AGTTATTGGGATTTTAGTAGAGGTTTCACTATGTTGACCAGGCTTAGTCCTGACCTCAAGTGATCTGCCTGCCTCCCAAACCTGTGCCTTTTTTTTTTTT
CTGAGGTGGAATCTCGTTCTTGTCACCCAGGCTGGAATGCAGTGGCATTATCTTGGCTCACTGTAACTTCACCACCTGGGTTCAAGCCATTCTCCCTGCC
TCAGCCTCCTGAGTAGCTGGAACTACAGCCGCATGCCACCACACCCGGCTACTTTTTTGTATTTTTAGTACAGATGGGGTTTCACCGTGTTAACAGGATG
GTCTCGATCTGACCTCATGATCCGCCTGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGTGGGAACCACTGCACCCAGCCAAATTATGCTTTTTATTTTA
TTTTTTTGAAACGGAGTTTCTCTGTTATTTCCCAGGCTGGAGTGCAATGGCAGGATCTCTGCTCACCGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTC
CTGCCTTAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCATGCCTGGCTAATTATTGT

Expression



Full and truncated open reading frames discovered in TCONS_00194686

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.