Detailed information on TCONS_00044178

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00044178 674 479 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00044178 647 480 UTR3 Trans

Sequence

>TCONS_00194686 (4596 nt)
ATTTAATCGTCTCCCCGGGGAGATTCGTTCTCATTTTTCTACTGCTCGTGGTAAGTGGCTTCGTGGTCTTTATAGCTGTTACTCTTTTGTACTTTGTCTT
TTTCTTTTATTTTCTTTTGAGCGATTGTGCGAACATAGCATAGCACGCACTATGCCTTCTGTGTTGTAGCTGCCTGGCCAGGGCGACTGGCGGATAAGGT
CTTGTGCGTGGCCTCGAGGCTTAAAAGTAGCAGTGGGGCTTTGTGAAGGACAAAATGGCGATGGCGGGCCGTGTAGGTCCCCCTTCCTATGATGAGGACC
TTTTCACAGACCTGTACTGAGCTCCGTGAGGATAAATAACTCTGAGGAGATGGGCCCTGCAAGCCTCTTGCTTAGCCGTCTGTTCAGAAAATAGCGTTTT
CGAAATGCCCTGAGTTGACCTAATGTCTTATTGGGCTCCTGTCTGCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCAGTAAGTTCT
TACGGCCATTTCTTAATCTCTGCTCTTTCGTTGAGTGTGTGGAAGTTGCTACGGGGATGATTTTACGAACTGAACTCTCTCTTTCTGATGGATTAGTGGA
GAAAACAGAAAATTCTGAGTAGCACTGTACTGTACGCAACAAATGTCAGGGCCCTATTGATTTGTCTGAGGTGTTAGTGAAGGGTGTTATTTTTTCAGAT
GTTCAGCCCACAAGAGCTTACTGGTGAAGGAATGGGACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGGTAGGTGTACATGGTTTA
TGCTCTTACAGAGGAGACCTTGTAGATAACCACTCCATGATGAACACAAAATGACAAGCATATGGCTGAACTTTCAAGTGATGTCATCTTACTACTGAGA
AGTGAGAGAGAGGTCTTAAGGGGTCTTTGAATGACTATTTTTAGGTACATAAAATGCTTTCCTCTGTTGTCTACAGCATCTCATAATCTATCCTGGGGAA
TTCAGCTGCCTCCCAGGGTGAATACAGGTAATTATCCAAATTGGTGTATGTCATCTTTGTAAATGTTCAAGAAAACAAGTGGCCGGCGGAACAATGTTTT
TTGGCGCCTTCCATCTTGTTCCTCTTGAAATGATTTTCTGGGGAGGGAGATCGCAACCCGGTACTACAGTTCTTGTAAGGGTGTGCTGTTACCCTCATCC
ATATATCGATCACGTTACTGTCAGATGATTTGAATTGATAAGCTGATGTTCTGTGAGGTACAAAAGTTAATAGCATGTTAGAGTTCTGATGGCAGTTGTT
GTTTATGAATAAGCTTCATTCCATCCTAATACCTTAAAATAACTAATTTGCTTTCCTTTCCAGGTATTCCTGATGACAGTCTGCCTCTATCTTACAGTAA
GTTGTTTTTCGAATTCTATGGGCCTATTATCTAATAGATAACTTAGCCATTTTGATATTTGTTACCAAAGCCTGCTTAACCCATAAAGTTTTCTGGTTCC
TCTTGTTCTCTGTAGTGATGTTTCTAGATAGATGCCCACTGATATATGCCCCTTTTTTCTCAGATAGATGCCCACTGATCTGCCCAGGGTCAGACGAATG
CTTGTCAGTTGTAGCTTTCCAGGATTCTGCTCCAATGAGGAGGAAACATCCTGCCTTACCCCTGTTTTAGCCTGGGAACCAGTAATTGTGAACTCACCAG
GGTTAACATGAAGAGGGCATGAGAGCTTATTCCATAAGGAATTGTCTGAGACATTTGGTTACCTTTTCTTAGTTTGTCCATTAGCAACCGTAACTAAAAT
AGTTTTGGCTGTTTGGGATAATTAGCTAATTGAATGATTTTTTGATTCAGGAGCAGCTTGTTGCTATATACCATTGAAAAGCCTTCAGAGCTGAGAGGTT
AGTTGATATTTTTTGTTCCTTACAGCTTATGCCACCAAGTAGGCAGTTTCTATGATGAATCAAACTAGCTCACTATGACCGACAGTGAAAATACATGAAC
ACCTGAGAAACTGGAGAACGCAGGGAGTGGGGGGTAACCATGTCTGAGGAATCTTTCACCCACAGCTTTGTTTTTCTCTAGGTACTACTAACCAATAACC
TGCTTGGCTCAAAGGTGAGTAATTTCACGGTATTCAATGCACTCAGTATATAGGGTAGGAAAAAGTGCCTTTTTAGGCCTGTGTTTGTGATGACTTACAT
GGAATCTCGTTCGGCTGATGACTTGCTGTTGAGACTCTGAAATCTGATTTTCTGAGAATGATGGGTGGGAACAACATAATGCGGGATATGAGAAGCACTA
CTGACTTGGTCTTCCTCCTTTCAGGGCCAGCACCTTCTCTCTAAAGCCCAAGAGGAGTTTGAGGTAAATGGCTTTGCAATAGTTACCATCAATGGCTGCT
ATATAAAATTTTCTGTGATTTTTGTGTGTGATAGCACTGTGGTCTGGGTGAATGTACACAGACATAACTGGCTTAACCCAAAGTCTTTGATCTCCTGAAC
CACCAGTGATGAATTGCTGCTCACCAGTGATGAGTTGAATACCGCCCCAGTCTGATCAATGTGTGACTGAAAGGTATTTTCTGAGCTGTGAGCCTGCCTT
CCAGTGACATGTTCTAAAAATTGCAAGTTATTTGAGGAGGCTTTACAGCCAATAGGAAGTTCTTGGGCTAAGTAGTGTTTCCTATAAAATGTGCCCTGAA
ACTTCTTTCTGCCAAGCAATAGATACAATTGAGAGATTGTAAAATGTGACATAGAATGAAAGTCTCTCAAGACTACATTTTTCTTTCTTGATTTTGCAGG
AAAACTAGGTGTCTGTGTTCACTCCAGGCTGAAGTTACAGGTCTGAGCAAATAAGGTGTATAAAAAATGGAATCTGTCTTGGAGGACATCAGAAGGTGAA
TTTTCCAAGTTCTTGGACAACCTAGCTGTTGAAAAGCTTTCTGGGTTTGGGGGGTATTTCAGATGTACCTTAAAGTGTTAGCAGACACAGATTAAGACAC
TGGGAGCCAATGAAACAGCAGTTGAGGGTTTGCTGTGTATCACATTTCTGTATTTTATCACCCCCTTCCTGCAACATTATTTATCTGGAATCTACCTGCC
CTTTTGTTTTTTAGATACAAGGGCTTGGTTTTGTTACCCAGGCTGGTTTCAAGGCCATAGCTTTAAGAGATCCTCTCACCACAGATTTCCAAAGTGCTGG
GATTGCAGGTGTGATTCATGGCACCCAGACTTTGCTGCCTTTCTTACATGATCCAGGCCCAGAACCCAAACTCAGGCACTGTATAGATGACCACTTTCGT
AAACTACTGACCTAGCTTGTTGCCAATTGTTGATTGAACTTCCCATAACTCCACTTCGTGTCTGTTCCTCTGTATACAGCCACCTTCTGTTCCCGTCATG
AGCCTTTAGGTCTCCATTTGCATATTGCAAATACTATGTTCCATGTAGGTAGCTCATTCAGGGCCTTGCTCTTCACTTCAAAAAAGGTTCCCTTGAGGAC
TGGCTGTCAATTTGTGTTGCTGTGTTGGTTGTTGATGAAAATAATAAAATGATTGATTACATAGTCCTGTTTACTTTTTTTGTGTGTATGTGTCTCTTAG
CATCAGTGTGTAAATTTCCATGGGAAACTGGCTTTCCTCTCATGCTCCCTGAAGTACCTGGAACTTGAAGGGACATCTGACAGTTTGCCTGATAGGCAGT
GTGTTAAATGAGTAACCTGAGTAGAACATCCATCTTTTTTTTTTTTCTCTTGCCTAGTCTTAGAGTACAGTGACATGATCACAACCTCACTGCAGCTTCA
AGCTTTTGGGCTTAAGCAAACCTACTTGACTTTAACCAGCAGCTGGGGCTGGGACTACAGACACCACACCCAGCCCAAATCTGTTTTTTCCTGGGGGAAG
CAAGGGACAATGGAGTCAAGCTGGAGTGCAGTAGTGCCATCTCGCCTCCCTGCAGCCTCCACCTGGATTGAGTGATTGTCCTGCCTCAGCCCCGAGTAGC
TGGGATTGCAGATACCTGTCACGAAGCAAGCCTAGTTATTGGGATTTTAGTAGAGGTTTCACTATGTTGACCAGGCTTAGTCCTGACCTCAAGTGATCTG
CCTGCCTCCCAAACCTGTGCCTTTTTTTTTTTTCTGAGGTGGAATCTCGTTCTTGTCACCCAGGCTGGAATGCAGTGGCATTATCTTGGCTCACTGTAAC
TTCACCACCTGGGTTCAAGCCATTCTCCCTGCCTCAGCCTCCTGAGTAGCTGGAACTACAGCCGCATGCCACCACACCCGGCTACTTTTTTGTATTTTTA
GTACAGATGGGGTTTCACCGTGTTAACAGGATGGTCTCGATCTGACCTCATGATCCGCCTGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGTGGGAACC
ACTGCACCCAGCCAAATTATGCTTTTTATTTTATTTTTTTGAAACGGAGTTTCTCTGTTATTTCCCAGGCTGGAGTGCAATGGCAGGATCTCTGCTCACC
GCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTTAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCATGCCTGGCTAATTATTGT

Expression



Full and truncated open reading frames discovered in TCONS_00194686

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.