Detailed information on TCONS_00044178

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00194655 E74-like factor 2 (ets domain transcript... novel protein coding TCONS_00044178 674 479 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcript... novel protein coding TCONS_00044178 647 480 UTR3 Trans

Sequence

>TCONS_00044178 (4597 nt)
ATTTAATCGTCTCCCCGGGGAGATTCGTTCTCATTTTTCTACTGCTCGTGGTAAGTGGCTTCGTGGTCTTTATAGCTGTTACTCTTTTGTACTTTGTCTT<br />TTTCTTTTATTTTCTTTTGAGCGATTGTGCGAACATAGCATAGCACGCACTATGCCTTCTGTGTTGTAGCTGCCTGGCCAGGGCGACTGGCGGATAAGGT<br />CTTGTGCGTGGCCTCGAGGCTTAAAAGTAGCAGTGGGGCTTTGTGAAGGACAAAATGGCGATGGCGGGCCGTGTAGGTCCCCCTTCCTATGATGAGGACC<br />TTTTCACAGACCTGTACTGAGCTCCGTGAGGATAAATAACTCTGAGGAGATGGGCCCTGCAAGCCTCTTGCTTAGCCGTCTGTTCAGAAAATAGCGTTTT<br />CGAAATGCCCTGAGTTGACCTAATGTCTTATTGGGCTCCTGTCTGCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCAGTAAGTTCT<br />TACGGCCATTTCTTAATCTCTGCTCTTTCGTTGAGTGTGTGGAAGTTGCTACGGGGATGATTTTACGAACTGAACTCTCTCTTTCTGATGGATTAGTGGA<br />GAAAACAGAAAATTCTGAGTAGCACTGTACTGTACGCAACAAATGTCAGGGCCCTATTGATTTGTCTGAGGTGTTAGTGAAGGGTGTTATTTTTTCAGAT<br />GTTCAGCCCACAAGAGCTTACTGGTGAAGGAATGGGACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGGTAGGTGTACATGGTTTA<br />TGCTCTTACAGAGGAGACCTTGTAGATAACCACTCCATGATGAACACAAAATGACAAGCATATGGCTGAACTTTCAAGTGATGTCATCTTACTACTGAGA<br />AGTGAGAGAGAGGTCTTAAGGGGTCTTTGAATGACTATTTTTAGGTACATAAAATGCTTTCCTCTGTTGTCTACAGCATCTCATAATCTATCCTGGGGAA<br />TTCAGCTGCCTCCCAGGGTGAATACAGGTAATTATCCAAATTGGTGTATGTCATCTTTGTAAATGTTCAAGAAAACAAGTGGCCGGCGGAACAATGTTTT<br />TTGGCGCCTTCCATCTTGTTCCTCTTGAAATGATTTTCTGGGGAGGGAGATCGCAACCCGGTACTACAGTTCTTGTAAGGGTGTGCTGTTACCCTCATCC<br />ATATATCGATCACGTTACTGTCAGATGATTTGAATTGATAAGCTGATGTTCTGTGAGGTACAAAAGTTAATAGCATGTTAGAGTTCTGATGGCAGTTGTT<br />GTTTATGAATAAGCTTCATTCCATCCTAATACCTTAAAATAACTAATTTGCTTTCCTTTCCAGGTATTCCTGATGACAGTCTGCCTCTATCTTACAGTAA<br />GTTGTTTTTCGAATTCTATGGGCCTATTATCTAATAGATAACTTAGCCATTTTGATATTTGTTACCAAAGCCTGCTTAACCCATAAAGTTTTCTGGTTCC<br />TCTTGTTCTCTGTAGTGATGTTTCTAGATAGATGCCCACTGATATATGCCCCTTTTTTCTCAGATAGATGCCCACTGATCTGCCCAGGGTCAGACGAATG<br />CTTGTCAGTTGTAGCTTTCCAGGATTCTGCTCCAATGAGGAGGAAACATCCTGCCTTACCCCTGTTTTAGCCTGGGAACCAGTAATTGTGAACTCACCAG<br />GGTTAACATGAAGAGGGCATGAGAGCTTATTCCATAAGGAATTGTCTGAGACATTTGGTTACCTTTTCTTAGTTTGTCCATTAGCAACCGTAACTAAAAT<br />AGTTTTGGCTGTTTGGGATAATTAGCTAATTGAATGATTTTTTGATTCAGGAGCAGCTTGTTGCTATATACCATTGAAAAGCCTTCAGAGCTGAGAGGTT<br />AGTTGATATTTTTTGTTCCTTACAGCTTATGCCACCAAGTAGGCAGTTTCTATGATGAATCAAACTAGCTCACTATGACCGACAGTGAAAATACATGAAC<br />ACCTGAGAAACTGGAGAACGCAGGGAGTGGGGGGTAACCATGTCTGAGGAATCTTTCACCCACAGCTTTGTTTTTCTCTAGGTACTACTAACCAATAACC<br />TGCTTGGCTCAAAGGTGAGTAATTTCACGGTATTCAATGCACTCAGTATATAGGGTAGGAAAAAGTGCCTTTTTAGGCCTGTGTTTGTGATGACTTACAT<br />GGAATCTCGTTCGGCTGATGACTTGCTGTTGAGACTCTGAAATCTGATTTTCTGAGAATGATGGGTGGGAACAACATAATGCGGGATATGAGAAGCACTA<br />CTGACTTGGTCTTCCTCCTTTCAGGGCCAGCACCTTCTCTCTAAAGCCCAAGAGGAGTTTGAGGTAAATGGCTTTGCAATAGTTACCATCAATGGCTGCT<br />ATATAAAATTTTCTGTGATTTTTGTGTGTGATAGCACTGTGGTCTGGGTGAATGTACACAGACATAACTGGCTTAACCCAAAGTCTTTGATCTCCTGAAC<br />CACCAGTGATGAATTGCTGCTCACCAGTGATGAGTTGAATACCGCCCCAGTCTGATCAATGTGTGACTGAAAGGTATTTTCTGAGCTGTGAGCCTGCCTT<br />CCAGTGACATGTTCTAAAAATTGCAAGTTATTTGAGGAGGCTTTACAGCCAATAGGAAGTTCTTGGGCTAAGTAGTGTTTCCTATAAAATGTGCCCTGAA<br />ACTTCTTTCTGCCAAGCAATAGATACAATTGAGAGATTGTAAAATGTGACATAGAATGAAAGTCTCTCAAGACTACATTTTTCTTTCTTGATTTTGCAGG<br />AAAACTAGGTGTCTGTGTTCACTCCAGGCTGAAGTTACAGGTCTGAGCAAATAAGGTGTATAAAAAATGGAATCTGTCTTGGAGGACATCAGAAGGTGAA<br />TTTTCCAAGTTCTTGGACAACCTAGCTGTTGAAAAGCTTTCTGGGTTTGGGGGGTATTTCAGATGTACCTTAAAGTGTTAGCAGACACAGATTAAGACAC<br />TGGGAGCCAATGAAACAGCAGTTGAGGGTTTGCTGTGTATCACATTTCTGTATTTTATCACCCCCTTCCTGCAACATTATTTATCTGGAATCTACCTGCC<br />CTTTTGTTTTTTAGATACAAGGGCTTGGTTTTGTTACCCAGGCTGGTTTCAAGGCCATAGCTTTAAGAGATCCTCTCACCACAGATTTCCAAAGTGCTGG<br />GATTGCAGGTGTGATTCATGGCACCCAGACTTTGCTGCCTTTCTTACATGATCCAGGCCCAGAACCCAAACTCAGGCACTGTATAGATGACCACTTTCGT<br />AAACTACTGACCTAGCTTGTTGCCAATTGTTGATTGAACTTCCCATAACTCCACTTCGTGTCTGTTCCTCTGTATACAGCCACCTTCTGTTCCCGTCATG<br />AGCCTTTAGGTCTCCATTTGCATATTGCAAATACTATGTTCCATGTAGGTAGCTCATTCAGGGCCTTGCTCTTCACTTCAAAAAAGGTTCCCTTGAGGAC<br />TGGCTGTCAATTTGTGTTGCTGTGTTGGTTGTTGATGAAAATAATAAAATGATTGATTACATAGTCCTGTTTACTTTTTTTGTGTGTATGTGTCTCTTAG<br />CATCAGTGTGTAAATTTCCATGGGAAACTGGCTTTCCTCTCATGCTCCCTGAAGTACCTGGAACTTGAAGGGACATCTGACAGTTTGCCTGATAGGCAGT<br />GTGTTAAATGAGTAACCTGAGTAGAACATCCATCTTTTTTTTTTTTCTCTTGCCTAGTCTTAGAGTACAGTGACATGATCACAACCTCACTGCAGCTTCA<br />AGCTTTTGGGCTTAAGCAAACCTACTTGACTTTAACCAGCAGCTGGGGCTGGGACTACAGACACCACACCCAGCCCAAATCTGTTTTTTCCTGGGGGAAG<br />CAAGGGACAATGGAGTCAAGCTGGAGTGCAGTAGTGCCATCTCGCCTCCCTGCAGCCTCCACCTGGATTGAGTGATTGTCCTGCCTCAGCCCCGAGTAGC<br />TGGGATTGCAGATACCTGTCACGAAGCAAGCCTAGTTATTGGGATTTTAGTAGAGGTTTCACTATGTTGACCAGGCTTAGTCCTGACCTCAAGTGATCTG<br />CCTGCCTCCCAAACCTGTGCCTTTTTTTTTTTTCTGAGGTGGAATCTCGTTCTTGTCACCCAGGCTGGAATGCAGTGGCATTATCTTGGCTCACTGTAAC<br />TTCACCACCTGGGTTCAAGCCATTCTCCCTGCCTCAGCCTCCTGAGTAGCTGGAACTACAGCCGCATGCCACCACACCCGGCTACTTTTTTGTATTTTTA<br />GTACAGATGGGGTTTCACCGTGTTAACAGGATGGTCTCGATCTGACCTCATGATCCGCCTGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGTGGGAACC<br />ACTGCACCCAGCCAAATTATGCTTTTTATTTTATTTTTTTGAAACGGAGTTTCTCTGTTATTTCCCAGGCTGGAGTGCAATGGCAGGATCTCTGCTCACC<br />GCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTTAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCATGCCTGGCTAATTATTGT

Expression



Full and truncated open reading frames discovered in TCONS_00044178

In silico ORF/peptide predictions
>peptide 1 (66 aa)
MITTSLQLQAFGLKQTYLTLTSSWGWDYRHHTQPKSVFSWGKQGTMESSWSAVVPSRLPAASTWIE

>peptide 2 (55 aa)
FNRLPGEIRSHFSTARGKWLRGLYSCYSFVLCLFLLFSFERLCEHSIARTMPSVL

>peptide 3 (51 aa)
MFSPQELTGEGMGQDPSLCKASVTVMFQVGVHGLCSYRGDLVDNHSMMNTK

>peptide 4 (50 aa)
MFLDRCPLIYAPFFSDRCPLICPGSDECLSVVAFQDSAPMRRKHPALPLF


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT021829 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q86U02|CN165_HUMAN (Evalue: 4.0E-15)