Detailed information on TCONS_00044182

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00044182 674 479 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00044182 647 480 UTR3 Trans

Sequence

>TCONS_00194686 (4493 nt)
GCGCGTGCGCTCGCCGTAGCCCCGCCCCCAAATCCCGTGGGCCTCTGCGGCATGGTATTTAATCGTCTCCCCGGGGAGATTCGTTCTCATTTTTCTACTG
CTCGTGGTAAGTGGCTTCGTGGTCTTTATAGCTGTTACTCTTTTGTACTTTGTCTTTTTCTTTTATTTTCTTTTGAGCGATTGTGCGAACATAGCATAGC
ACGCACTATGCCTTCTGTGTTGTAGCTGCCTGGCCAGGGCGACTGGCGGATAAGGTCTTGTGCGTGGCCTCGAGGCTTAAAAGTAGCAGTGGGGCTTTGT
GAAGGACAAAATGGCGATGGCGGGCCGTGTAGGTCCCCCTTCCTATGATGAGGACCTTTTCACAGACCTGTACTGAGCTCCGTGAGGATAAATAACTCTG
AGGAGATGGGCCCTGCAAGCCTCTTGCTTAGCCGTCTGTTCAGAAAATAGCGTTTTCGAAATGCCCTGAGTTGACCTAATGTCTTATTGGGCTCCTGTCT
GCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCAGTAAGTTCTTACGGCCATTTCTTAATCTCTGCTCTTTCGTTGAGTGTGTGGAA
GTTGCTACGGGGATGATTTTACGAACTGAACTCTCTCTTTCTGATGGATTAGTGGAGAAAACAGAAAATTCTGAGTAGCACTGTACTGTACGCAACAAAT
GTCAGGGCCCTATTGATTTGTCTGAGGTGTTAGTGAAGGGTGTTATTTTTTCAGATGTTCAGCCCACAAGAGCTTACTGGTGAAGGAATGGGACAAGACC
CATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGGTAGGTGTACATGGTTTATGCTCTTACAGAGGAGACCTTGTAGATAACCACTCCATGATGAA
CACAAAATGACAAGCATATGGCTGAACTTTCAAGTGATGTCATCTTACTACTGAGAAGTGAGAGAGAGGTCTTAAGGGGTCTTTGAATGACTATTTTTAG
GTACATAAAATGCTTTCCTCTGTTGTCTACAGCATCTCATAATCTATCCTGGGGAATTCAGCTGCCTCCCAGGGTGAATACAGGTAATTATCCAAATTGG
TGTATGTCATCTTTGTAAATGTTCAAGAAAACAAGTGGCCGGCGGAACAATGTTTTTTGGCGCCTTCCATCTTGTTCCTCTTGAAATGATTTTCTGGGGA
GGGAGATCGCAACCCGGTACTACAGTTCTTGTAAGGGTGTGCTGTTACCCTCATCCATATATCGATCACGTTACTGTCAGATGATTTGAATTGATAAGCT
GATGTTCTGTGAGGTACAAAAGTTAATAGCATGTTAGAGTTCTGATGGCAGTTGTTGTTTATGAATAAGCTTCATTCCATCCTAATACCTTAAAATAACT
AATTTGCTTTCCTTTCCAGGTATTCCTGATGACAGTCTGCCTCTATCTTACAGTAAGTTGTTTTTCGAATTCTATGGGCCTATTATCTAATAGATAACTT
AGCCATTTTGATATTTGTTACCAAAGCCTGCTTAACCCATAAAGTTTTCTGGTTCCTCTTGTTCTCTGTAGTGATGTTTCTAGATAGATGCCCACTGATA
TATGCCCCTTTTTTCTCAGATAGATGCCCACTGATCTGCCCAGGGTCAGACGAATGCTTGTCAGTTGTAGCTTTCCAGGATTCTGCTCCAATGAGGAGGA
AACATCCTGCCTTACCCCTGTTTTAGCCTGGGAACCAGTAATTGTGAACTCACCAGGGTTAACATGAAGAGGGCATGAGAGCTTATTCCATAAGGAATTG
TCTGAGACATTTGGTTACCTTTTCTTAGTTTGTCCATTAGCAACCGTAACTAAAATAGTTTTGGCTGTTTGGGATAATTAGCTAATTGAATGATTTTTTG
ATTCAGGAGCAGCTTGTTGCTATATACCATTGAAAAGCCTTCAGAGCTGAGAGGTACTACTAACCAATAACCTGCTTGGCTCAAAGGGCCAGCACCTTCT
CTCTAAAGCCCAAGAGGAGTTTGAGGTAAATGGCTTTGCAATAGTTACCATCAATGGCTGCTATATAAAATTTTCTGTGATTTTTGTGTGTGATAGCACT
GTGGTCTGGGTGAATGTACACAGACATAACTGGCTTAACCCAAAGTCTTTGATCTCCTGAACCACCAGTGATGAATTGCTGCTCACCAGTGATGAGTTGA
ATACCGCCCCAGTCTGATCAATGTGTGACTGAAAGGTATTTTCTGAGCTGTGAGCCTGCCTTCCAGTGACATGTTCTAAAAATTGCAAGTTATTTGAGGA
GGCTTTACAGCCAATAGGAAGTTCTTGGGCTAAGTAGTGTTTCCTATAAAATGTGCCCTGAAACTTCTTTCTGCCAAGCAATAGATACAATTGAGAGATT
GTAAAATGTGACATAGAATGAAAGTCTCTCAAGACTACATTTTTCTTTCTTGATTTTGCAGGAAAACTAGGTGTCTGTGTTCACTCCAGGCTGAAGTTAC
AGGTGAGTAAACCTAAATGTAAGGTGGACTATGCTAAAAATTCCCAATGAAGAAACTTTCACATGTCTTACTCTCTGTCCTAGTCCCAGAGCCTGTAAAG
GTGAACCCACTGGGACTGGCTGGGGGAGAAGAGGAAGATTTGTTCCAGAAGGAACTGTCTGAGGGATGATAAAGATTTCTATACAGAGAAAGGGAGTAAT
CATCACTTGTTGAAAACATTGGTTTTATTTTTTCCAGGTCTGAGCAAATAAGGTGTATAAAAAATGGAATCTGTCTTGGAGGACATCAGAAGGTGAATTT
TCCAAGTTCTTGGACAACCTAGCTGTTGAAAAGCTTTCTGGGTTTGGGGGGTATTTCAGATGTACCTTAAAGTGTTAGCAGACACAGATTAAGACACTGG
GAGCCAATGAAACAGCAGTTGAGGGTTTGCTGTGTATCACATTTCTGTATTTTATCACCCCCTTCCTGCAACATTATTTATCTGGAATCTACCTGCCCTT
TTGTTTTTTAGATACAAGGGCTTGGTTTTGTTACCCAGGCTGGTTTCAAGGCCATAGCTTTAAGAGATCCTCTCACCACAGATTTCCAAAGTGCTGGGAT
TGCAGGTGTGATTCATGGCACCCAGACTTTGCTGCCTTTCTTACATGATCCAGGCCCAGAACCCAAACTCAGGCACTGTATAGATGACCACTTTCGTAAA
CTACTGACCTAGCTTGTTGCCAATTGTTGATTGAACTTCCCATAACTCCACTTCGTGTCTGTTCCTCTGTATACAGCCACCTTCTGTTCCCGTCATGAGC
CTTTAGGTCTCCATTTGCATATTGCAAATACTATGTTCCATGTAGGTAGCTCATTCAGGGCCTTGCTCTTCACTTCAAAAAAGGTTCCCTTGAGGACTGG
CTGTCAATTTGTGTTGCTGTGTTGGTTGTTGATGAAAATAATAAAATGATTGATTACATAGTCCTGTTTACTTTTTTTGTGTGTATGTGTCTCTTAGCAT
CAGTGTGTAAATTTCCATGGGAAACTGGCTTTCCTCTCATGCTCCCTGAAGTACCTGGAACTTGAAGGGACATCTGACAGTTTGCCTGATAGGCAGTGTG
TTAAATGAGTAACCTGAGTAGAACATCCATCTTTTTTTTTTTTCTCTTGCCTAGTCTTAGAGTACAGTGACATGATCACAACCTCACTGCAGCTTCAAGC
TTTTGGGCTTAAGCAAACCTACTTGACTTTAACCAGCAGCTGGGGCTGGGACTACAGACACCACACCCAGCCCAAATCTGTTTTTTCCTGGGGGAAGCAA
GGGACAATGGAGTCAAGCTGGAGTGCAGTAGTGCCATCTCGCCTCCCTGCAGCCTCCACCTGGATTGAGTGATTGTCCTGCCTCAGCCCCGAGTAGCTGG
GATTGCAGATACCTGTCACGAAGCAAGCCTAGTTATTGGGATTTTAGTAGAGGTTTCACTATGTTGACCAGGCTTAGTCCTGACCTCAAGTGATCTGCCT
GCCTCCCAAACCTGTGCCTTTTTTTTTTTTCTGAGGTGGAATCTCGTTCTTGTCACCCAGGCTGGAATGCAGTGGCATTATCTTGGCTCACTGTAACTTC
ACCACCTGGGTTCAAGCCATTCTCCCTGCCTCAGCCTCCTGAGTAGCTGGAACTACAGCCGCATGCCACCACACCCGGCTACTTTTTTGTATTTTTAGTA
CAGATGGGGTTTCACCGTGTTAACAGGATGGTCTCGATCTGACCTCATGATCCGCCTGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGTGGGAACCACT
GCACCCAGCCAAATTATGCTTTTTATTTTATTTTTTTGAAACGGAGTTTCTCTGTTATTTCCCAGGCTGGAGTGCAATGGCAGGATCTCTGCTCACCGCA
ACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTTAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCATGCCTGGCTAATTATTGT

Expression



Full and truncated open reading frames discovered in TCONS_00194686

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.