| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000423516 | transketolase | protein coding | TCONS_00046588 | 539 | 283 | CDS | Trans | |
| ENST00000472528 | transketolase | nonsense mediated decay | TCONS_00046588 | 539 | 283 | UTR3 | Trans | |
| ENST00000517408 | antisense | antisense | TCONS_00046588 | 588 | 294 | noncoding | Trans | |
| ENST00000556448 | lincRNA | lincRNA | TCONS_00046588 | 731 | 470 | noncoding | Trans | |
| ENST00000620139 | melanoregulin | protein coding | TCONS_00046588 | 567 | 294 | UTR3 | Trans | |
| TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | TCONS_00046588 | 609 | 293 | UTR3 | Trans | |
| TCONS_00057599 | transcribed_unprocessed_pseudogene | novel protein coding | TCONS_00046588 | 587 | 425 | UTR5 | Trans | |
| TCONS_00057600 | transcribed_unprocessed_pseudogene | novel protein coding | TCONS_00046588 | 587 | 425 | UTR5 | Trans | |
| TCONS_00057601 | transcribed_unprocessed_pseudogene | novel protein coding | TCONS_00046588 | 587 | 425 | UTR5 | Trans | |
| TCONS_00057603 | transcribed_unprocessed_pseudogene | novel protein coding | TCONS_00046588 | 587 | 425 | UTR5 | Trans | |
| TCONS_00075813 | forkhead box N3 | novel protein coding | TCONS_00046588 | 605 | 293 | UTR5 | Trans | |
| TCONS_00075827 | forkhead box N3 | novel protein coding | TCONS_00046588 | 605 | 293 | UTR3 | Trans | |
| TCONS_00080691 | ankyrin repeat domain 34C | novel protein coding | TCONS_00046588 | 559 | 317 | UTR5 | Trans | |
| TCONS_00080692 | ankyrin repeat domain 34C | novel protein coding | TCONS_00046588 | 559 | 317 | UTR5 | Trans | |
| TCONS_00097030 | lincRNA | novel protein coding | TCONS_00046588 | 608 | 353 | UTR5 | Trans | |
| TCONS_00097031 | lincRNA | novel protein coding | TCONS_00046588 | 860 | 551 | UTR5 | Trans | |
| TCONS_00180672 | transketolase | novel protein coding | TCONS_00046588 | 539 | 283 | UTR5 | Trans | |
| TCONS_00180673 | transketolase | novel protein coding | TCONS_00046588 | 539 | 283 | UTR5 | Trans | |
| TCONS_00239255 | tumor protein D52 | novel protein coding | TCONS_00046588 | 622 | 293 | UTR3 | Trans | |
| TCONS_00251973 | G protein-coupled receptor 34 | novel protein coding | TCONS_00046588 | 519 | 290 | UTR3 | Trans |
>TCONS_00251973 (1532 nt)
AAGAAATACCCCCAACTGGGTAATTTATAAAGGAAAGAGGTTTATTTGACTCACAGTTGAGCAGGGCTGAGGAGGCCTCAGGGAACTTACAATCATGGTG
GGAGGGGAAGCAAACACATCTTTCTTCACATGGTGGCAGCAAGGAGAAGTGCAGAGCAAAGTGGGGGAAAAGCCCCTTATAAAACCACCAGATCTCATGA
GAACTTGCTCACTATCATGAGAACAGCATGGAGGTAACTGCTCCCATGATTCAATTACTTCCCACTGGGTCCCTCCTATGACAAGTGAGGATTATGGGAA
CTACAATTCAAGATGAGATTTGGGTGGGGCCAAGCCAAACTATATCATTCCAGTCCTGGCCCCTCCCAAATCTCATGTCCTCACACTTCAAAACACAATC
ACACCCTTCCAACAGTCACCCAAAGTCTTAACTGGTTCCCACTCCTGGTACCAAAATCTGTGTTAGTCAGGGTTCTCTAAAGGGACAGAACTAATAGGAT
ATATGTATACCTGAAGGGGAGTTTATTAGGAGAATTGACTCACAGGATCACAAGATGAAGTCCCACAAATAGGTTGCCTACAAGCTGAGGAGCAAGGAAG
CCAGTCCAAGTCCCGAACCTCAAAGGTAAGGAAGCCAACAGTGAAGACTTCAGTCTGTGGCCAAAGGTGTGAGAGCCTCTGGCAAACCACTGGTGTAAGT
CCAAGAGTCGAGAAGCTAAAGAATTTGGAGTCTGATGTTCGAGGGCAGGAAGCATCCAGCACAGGAGAAAGATGGAGGCCAGAAGACTCAGCAAGTCTGC
TCTTTCCAACGTCTTCTGCCTGCTTTACTCTAGCCACACTGGCAGCTGATTAGATGGTACCTACCCACATTGAGGGTGGGTCTGCCTTTCCCGATCCACT
GACTCAAATGTTAATCTCCTTTGGCAACACCCTCACAGACACCCAGGAACAATACTTTTGCATCTTTCAATCCAGTCAAATTAACAGTTAATGTTAACCA
TTACAGGAAGGTACTGGAGGGTTTTAAGCAGAGAAGTGGCATAATCTGACTTAGGTATTCAATGGATCATTCTCGCTGTTGTGTTTTTAAAAAGACAGGA
GGAGGGAAATTTTAAGGAGATTATATAGGAAGCTATTGTATTAATAAGAAATGGTGGCTGGACATGGTGGCTCATGCCTGTAATCCCAGCACTTTTGGAG
GCCAAGACAGGCGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACCCCATATCTACTAAAAATACAAAAAAATAACCAGGTGTG
GTGGCACCCGTCTGTAATCCCAGCTATTCGGGAGGCTGAGTCAGGACAATTGCTTGAACCCGGGAGGCAAAGGTTGCAGTGAGCCAAGATCGCACCACTA
CACTCCAGCCTGGGTGACAGAGCAAGACTCCATCTCAAAGAAAAGAAATGGTGGTATCTCAGAACAGACTGCTAGTGTCAGAAGTGGTATTTGTTGGATA
CTGGATATCTGGTAGAGACTCCAGCAATTTTAG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.