Detailed information on TCONS_00048628

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000489959 carcinoembryonic antigen-related cell adhesion molecule pseudogene 10 processed transcript TCONS_00048628 702 343 noncoding Trans
ENST00000578119 DSG1 antisense RNA 1 antisense TCONS_00048628 668 287 noncoding Trans
ENST00000582217 myosin ID processed transcript TCONS_00048628 834 349 noncoding Trans

Sequence

>ENST00000582217 (1608 nt)
CCCGGGCAATGGCGGGCGCCCCTCCCGCAGCCTCGCTGCCGCCTTGCAGTTGGATCTCAGACTGCTGTGCTAGCAATCAGCGAGACTCCGTGGGCGTAGG
ACCCTCCGAGCCAGGTGTGGGATATAATCTCGTGGTGCGCCGTTTTTTAAGCGGGTCTGAAAAACGCAATATTCGGGTGGGAGTGACTCGATTTTCCAGG
TGCGTCCGTCACCCCTTTCTTTGACTCAGAAAGGGAACTCCCTGACCCCTTGCGCTTCCCAAGTGAGGCAATGCCTCGCCCTGCTTCGGCTCGCGCACCC
ACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCACGCTGGG
AGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTGGCTCCTCCGCCTCAGAGGTATTATCGCTTCAGTTCCAGATCACCACAGTAAATACTGCAATAC
ACCAGGTGCAAGTTGATAAAAGAATTCTGGAAATTGAAGGCCAAGGAAGAGTGACTCAAAAATAAGAAGCAGGCTGAAAAATGAGATGAGGAGACCGAGG
CTCGGAGAGGCTTATGCATTTGCCCAAGACTCTACAACTCCACAACTTAACAGGCAATTGCATCTAGCATATAATGTGTTGGTTATCCCCAGAACACAGA
GCAGTGCATCTCCACAGCGAGAATTCCAGAACAGGGTAATCATCAAGAATCAAATGGCTTGGATCTGGTCTCTTCTCTTTGAGGAAGCAAGCAGGCATGG
AGGTGAGTCAGGCCATTGGAAGATTTCCTGTGGCTGATGAAGAATCCAACTCCAGGTTGCTCTTCTTTGAAGAGGATTCCAGAAATGCTTAGGGGCTGCT
TGTTTGGACTGTAGGAGCTTAGCTGAGCACCAAGCACCAGCAGGAATCAGAGAATGGTGGCTTCCATCCTCTGCGCACAGCAGCAAGGAAGGTACGTTCA
CCTTCAACTTAATTCCAAGGGTGCGTCATAAGCTATGGGCTGAGCCTGGCCCCTGTGGGGATGAAGGGCTGCCCCAGGAAGGTGGAAGAGGGTCAAGCCC
TGCCCTGCCCTCAAAAAAACCTGTAACTAAGTGCAAATGGGCTCTGCTCATCCAAATTCTGGCTTTGTCCTGTATCAGTTACATGAACTTCCGCCAGACT
CTGAAACTCAATTGCTCATCTGAAAAACTACAGTAACACTAGTAAAGCCCACCATACAGGGCTTTGTGAGTTTTAAATATAACTATGTGGAAGCACCTGG
CACACAATGAGTAGAGACAAGGTTAATGTTTGTTGTTGAATCTTGTTAGAGTGAAAAGACAGCCACACATTAAACAATTAAAGAACAATACCAGGCGGTC
TACCTGCGATAAGGTGCTGAATTAAATATCACCAGGTGCCAACCTGTGTGGCACTGACAGCCGCCCTCAGCCCCCAGCCGAGCTAGAGGGCACTGACAAT
AGGGTGTCTGTCTGATTTCAGGGGAGGAGGAGGGCCCGCCACCCACTGTGGAGCCGTTCTGTCTGGGCAGTGGAAAACTCCATCTTTCCACGAGCCTGCC
CTTGTCTAC

Expression



Full and truncated open reading frames discovered in ENST00000582217

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.