Detailed information on TCONS_00051282

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding TCONS_00051282 531 277 UTR3 Trans
ENST00000309060 zinc fingers and homeoboxes 3 protein coding TCONS_00051282 543 307 UTR3 Trans
ENST00000421422 zinc fingers and homeoboxes 3 protein coding TCONS_00051282 543 307 UTR3 Trans
ENST00000450928 antisense antisense TCONS_00051282 506 296 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00051282 533 300 CDS Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay TCONS_00051282 594 304 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00051282 561 295 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00051282 531 309 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00051282 656 295 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding TCONS_00051282 502 286 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00051282 549 311 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding TCONS_00051282 534 274 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding TCONS_00051282 534 274 UTR3 Trans

Sequence

>TCONS_00168220 (2878 nt)
ATATCGTGGTTGTGTCGTGAGAACTTTAAGATTTTGCAGTTCCTTGTAGGCAGGAGTCCTGTTTGCTGCTACTTTACAATACTAGGCTTAAGACATTTTA
TGAAATGAACTCACACAACAGTCTCTGAGAGGCTCAAGCCCCTCCTTCCCTTCCGGGACGGAGGATCATAGAGCTGTCTGGCGCAGCGAGGCCTCCCGGC
GCCACCGAGACGCGCAGAGGACGGCTAGAGCGTTGCTCGCCGAGAGACTTCCTCTTCGTTAAGTCGGCCTTCCCAACATGGCGCAGTCTATTAACATCAC
GGAGCTGAATCTGCCGCAGCTAGAAATGCTCAAGAACCAGCTGGACCAGGAAGTGGAGTTCTTGTCCACGTCCATTGCTCAGCTCAAAGTGGTACAGACC
AAGTATGTGGAAGCCAAGGACTGTCTGAACGTGCTGAACAAGAGCAACGAGGGTATGGGGTAGGCGGGTGAGGGTAACCTAAAGTGGCGAACCTGCTTCT
CTCGTCCCACCTCCTAACCCAGTTTTTCTTACCTGAAACGAGAAAATCCATTACATATCGTATACCGCTTCATGAACCCTTTGCATGTTGCCTGCCTAGA
ATTGAAAAGTACAGGACATTCCTCTGCTCCTATTGCCCCTGTTTCCGTTCTTTTCACACTGTCTGTGGGTGCTGTGCCCTGTTGGAACTCTCTTTAACGT
CTTACGTTGGAGCCGCTAACCTTCCCCAGGTGTTTGTCTTCATTGCTTTCACAGGGAAAGAATTACTCGTCCCACTGACGAGTTCTGTATCCTTTCCACA
GGAACGGCTACCTGCTGCCTTCTCCCTTTCTCCTTCACTCCCCCAAAAAGCGGGGAGGGGGATTGTTTTGATTACTTCAGATTACCCTCTCCTCACAATG
ATTTTGAGGATACCCTTTTTTTTTTTCTTTCTTTTTTGAGACGGAATTTCGCTCTGTCGCCCAGGCTGGAGCGCAATGGTGAGATCTTGGCTTACTGCAA
CCTCCGCCTCCCGAGTTCAAGAGATTCTTCTGCCTCAGTCTCCCGAGTAGCTGGGACTTTAGGTACGCGCCACCACGACCGGCTAATTTTTGTATTAATA
GTAGAGTTGGGGGTTTCACCATATTGGCCAGGCTAGTCTCGAACTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTAGGATTACATTACA
GGCGTGAGCCACTGCCCCCGGCCAAGAATACTCTTATTACACACTTTGTAGCTCTTTTATCTGACTTCACACCAACATCCAGCTAATGTCTTGTGAACAC
CAAGGAGTATGTATAGTTGAGATGTAATATTTCCCTTTGCTGTTTGAGAACATTAATATGGAGATAAAGCTGGTGGTTTACACTTTGCTAATATCTTAGA
AGATACAGGCAATAGACAAAAATAGGAGGATATAGAAACAGGGAGCTTGGCTCTGTTAATCTTCAACTTCAGCTTAATTGTGGCTCATTTCTAAACTGTC
ACTAAGAAACCTGGATTGTGTTCACTTGTTCAGTGTTTTATTTGAATGAGCAAGTTATGGCAGTAGGGCATCTTTAATCTGTAGTCTCAGAACTGACAGG
CTAAAAGGAACACAGGAATAGTAGTGTGTAGTAGGGAATGGTTTAAAAAAAAAAATTAGCCAGGCACAGTGGTTCACGCCTGTAATCCCAGCACTTTGGG
AGGCCAAGGCTGGCAGATCACCTGAGGTCAGGAGTTAGAGATCGGTCTGGCCAACATGGTGAAACCCTGTCTTTACTAAATATACAAAAATTAGCCAGGC
GTGGTGGCACATGCTTGTAATCCCAGCTACTCCGGCGACTGAGACAGGAGAATTGCTTTAACCCGAGAGGCAGAGGTTGCAGTGAGCCGATAGCGGGCAA
TTGCACTCCAACCTGGGCGATAGAGCGAGACTCTGTCTCAGAAAGCAAAAAACAAACAAAACATTGACTTTGTCAGGAATTAGCTACTTCATGATTGAGG
GCATTAAGGGAAATGAGGCTGGCTTTTTACTTGTAGTACTCTACAACAGTAGGAAAACATGTCTAGTCTTTCTGGAGGGGCTAATGGGAAGAATTGCAAG
AACTGCTTAGAGAGTGAGAGATGGGATGAGGCAGGACAAGAGGGTGTTCCAGCATACATCATTTTCTCCTTAAAGAACCAACTTCTCTGTCTTCTTTCCA
TTTGGAGTTATAGGTATTGTTCTAAGGCCTCCAGATTATTCAGTCCTTATGCCTTGTAGCTTTTTGGAAAAAGAGGGTCTTTGGAGGCCAAGCAGGCTGG
CTGGCGGAATCATGGCTCATGCTGGGCTGGCTAGTTTTTCCCTTAATTCTTGCTTCTCAGATGTATGTCCCTGGGAAGCTGCATGATGTGGAACACGTGC
TCATCGATGTGGGAACTGGGTACTATGTAGAGAAGACAGCTGAGGATGCCAAGGACTTCTTCAAGAGGAAGATAGATTTTCTAACCAAGCAGATGGAGAA
AATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGGTAAGTTTTTCCTGGGGCACCTCTTGACCCTATCTCCATAATAAGGAACATGGATTGCA
GTGTGAACCACGGGGGTGTCCCCTTTGCTGGAGTAAAACTATGTCTTAGTTTCTCTTTGGCATCTTTAGAATCTGTGTATTGCATAATCACTATCTGTAG
ATTCCTGGGTTGAGCGTTTGAGAAATTTAGAGGAAGGAAATCATGTTTGTGCTTTGGTGGAGCTCCTATTTAATGACGATGGAATGGGGGAATGAGATGA
ACACACAGGAAGGAATCATGATCCAAACGAACTAAATACCAGCAATTATAACCCCGACTGCACATGAGAATCACTCAGG

Expression



Full and truncated open reading frames discovered in TCONS_00168220

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.