Detailed information on TCONS_00056500

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000562817 microtubule-associated protein 1 light chain 3 beta pseudogene lincRNA TCONS_00056500 634 290 noncoding Trans

Sequence

>ENST00000562817 (1209 nt)
CCCCCGAATTCTAAGGAAAGATAGGACAGAATAGCAAGTGAAAGGGGTCCGTGGTACTCACTGCTTGGTGATAGGTGATGGTCTCGCCGCTCAGCTATAG
GTGATGGTCTCACCGCTTGGTGATAGGCGAAAGTCCCATCTGGGTCGCCAAAATGTGTCCGGAATTGGTGGGTTCTTGGTCTCACTGACTTCAAGAATGA
AACTGCGGACCCTTGCGGTGAGTGTTACAGCTCTTAAGGTGGTGCGTCTGGAGTTTGTTCCTTCTGATGTTCGGATGTGTTCGGAGTTTCTTCCTTCTGG
TGGGTTCGTGGTCTCGCTGGCTCAGGAGTGAAGCTGCAGACCTTTGCGGTGAGTGTTACAGCTCTTAAGGCGGCACATCTGGAGTTGTTCGTTCCTCCCG
GCGGGCTCGTGGTCTCGCTGGCTTCAGGAGTGAAGCTGCAGGCCTTCGTGGTGAGTGTTACAGCTCATAAAAGCAGCATGGACCCAAAGAGTGAGCAGTA
GCAAGATTTATTGCAAAGAGCAAAAGAACAAAGCTTCCACAGTGTGGAAGGGGACCCAAGCGGGTTGCCACTGCTGGCTGGGGCAGCCTGGTTTCATTCT
CTTATCTGGCCCCACCCACGTCCTGCTGATTGGTAGAGCCCAGTGGTCTGTTTTGACAGGGCGCTGATTGGTGCGTTTACAATCCCTGAGCTGGATACAA
AGGTTCTCCACGTCCCCATCAGATTAGATACAGAGTATCCACACAAAGGTTCTCCAAGGCCCCACCAGAGCAGATAGATACAGAGTGTCCATTGGTGCAC
TCACAAACCCTGAGCTAGACACAGGGTGCTGATTGGTGTGTTTACAAACCTTGAGCTAGATACAGAGTGCCGATTGGTGTATTTACAATCCCTGAGCTAG
ACATAAAGGTTCTTCACGGCCCCACCAGAGCAGCTAGATACAGAGTGTCAATTGGTGCACTCACAAACCCTGAGCTAGACACAGGGTGCTGACTGGTGTG
TTTACAAACCTTGAGCTAGATACAGAGTGCCGATTGGTGTATTTATGTCTAGCTCAGGGATTGTAAAGGTTCTCCAAAGCCCCACCAGATTCAGGAGCCC
AGCTGGCTTCACCCGGTGAATCCCGCACCGGGGCTGCAGGTGGAGCTGCCTGCCAGTCCCCTGCGTGCGCCCGCACTCCTCAGCCCTTGGGTGGTCGATG
GGACTGGGTG

Expression



Full and truncated open reading frames discovered in ENST00000562817

In silico ORF/peptide predictions
>peptide 1 (59 aa)
LDSNQALFLVVSRDSLHYFLKSPTELYWVTFIHQRHQVLNLLYIVTQFPMTYFSGNQGL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT008417 (Evalue: 0)