Detailed information on TCONS_00056500

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000562817 microtubule-associated protein 1 light c... lincRNA TCONS_00056500 634 290 noncoding Trans

Sequence

>TCONS_00056500 (1210 nt)
CCCCCGAATTCTAAGGAAAGATAGGACAGAATAGCAAGTGAAAGGGGTCCGTGGTACTCACTGCTTGGTGATAGGTGATGGTCTCGCCGCTCAGCTATAG<br />GTGATGGTCTCACCGCTTGGTGATAGGCGAAAGTCCCATCTGGGTCGCCAAAATGTGTCCGGAATTGGTGGGTTCTTGGTCTCACTGACTTCAAGAATGA<br />AACTGCGGACCCTTGCGGTGAGTGTTACAGCTCTTAAGGTGGTGCGTCTGGAGTTTGTTCCTTCTGATGTTCGGATGTGTTCGGAGTTTCTTCCTTCTGG<br />TGGGTTCGTGGTCTCGCTGGCTCAGGAGTGAAGCTGCAGACCTTTGCGGTGAGTGTTACAGCTCTTAAGGCGGCACATCTGGAGTTGTTCGTTCCTCCCG<br />GCGGGCTCGTGGTCTCGCTGGCTTCAGGAGTGAAGCTGCAGGCCTTCGTGGTGAGTGTTACAGCTCATAAAAGCAGCATGGACCCAAAGAGTGAGCAGTA<br />GCAAGATTTATTGCAAAGAGCAAAAGAACAAAGCTTCCACAGTGTGGAAGGGGACCCAAGCGGGTTGCCACTGCTGGCTGGGGCAGCCTGGTTTCATTCT<br />CTTATCTGGCCCCACCCACGTCCTGCTGATTGGTAGAGCCCAGTGGTCTGTTTTGACAGGGCGCTGATTGGTGCGTTTACAATCCCTGAGCTGGATACAA<br />AGGTTCTCCACGTCCCCATCAGATTAGATACAGAGTATCCACACAAAGGTTCTCCAAGGCCCCACCAGAGCAGATAGATACAGAGTGTCCATTGGTGCAC<br />TCACAAACCCTGAGCTAGACACAGGGTGCTGATTGGTGTGTTTACAAACCTTGAGCTAGATACAGAGTGCCGATTGGTGTATTTACAATCCCTGAGCTAG<br />ACATAAAGGTTCTTCACGGCCCCACCAGAGCAGCTAGATACAGAGTGTCAATTGGTGCACTCACAAACCCTGAGCTAGACACAGGGTGCTGACTGGTGTG<br />TTTACAAACCTTGAGCTAGATACAGAGTGCCGATTGGTGTATTTATGTCTAGCTCAGGGATTGTAAAGGTTCTCCAAAGCCCCACCAGATTCAGGAGCCC<br />AGCTGGCTTCACCCGGTGAATCCCGCACCGGGGCTGCAGGTGGAGCTGCCTGCCAGTCCCCTGCGTGCGCCCGCACTCCTCAGCCCTTGGGTGGTCGATG<br />GGACTGGGTG

Expression



Full and truncated open reading frames discovered in TCONS_00056500

In silico ORF/peptide predictions
>peptide 1 (75 aa)
MVSPLGDRRKSHLGRQNVSGIGGFLVSLTSRMKLRTLAVSVTALKVVRLEFVPSDVRMCSEFLPSGGFVVSLAQE


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT108739 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8NAS9|CE017_HUMAN (Evalue: 2.0E-13)