Detailed information on TCONS_00062352

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00062352 542 284 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00062352 608 297 UTR3 Trans

Sequence

>TCONS_00062352 (1429 nt)
CCTACGCAGGTCACAAACATCTTTCTATGATTGTATAATTTTCAAGCAAGCAATAAGTGAAGATTTTTCCATAGGCCCTAAACTCACCTTTGCGAAATAG<br />GAAGCTGGTTTATTGGGAGTGATGAGCAGGGGGCGTAACAAATTAGCTTTGCGCAGTGGCAGTATCGTAGCCAATGAGGTCTATCCGAGGCGCGATTATT<br />GCTAATTGAAAACTTTTCCCAATACCCCGCCATGACGACTTGAAATATAGTCGGCATTGGCAATTTTTGACAGTCTCTACGGAGACTGAATTTTTAAAAG<br />TCTAAAGAAAAGGGTTTTAGGAAGTTGTATTATAGCAGGTTGTGTCTTATGTTTGGTTTGATAAGTTATGAGCTGTTCCTATGATAGTTTTTTGGTTGTT<br />GTTCAGGAGTATTCCGTGATTGAATGTCCGGGGTTCTGTGCGGGTACTGTGAGTTGTTTTCCAAAATGTATGACACTATGTTGGGAACTGGGTTCTAACT<br />AAGACAGTTATCGTTAATCTTTTTTATCCAAATGCAGCCAGCGAGTGAGCTACTCCACTTCCTTTGTCACTGAAGGTCACAGATTCCCTTAAAGGGAAGG<br />GGAACTCTAAAACTAACACATTAATACATCCAAAGTCTTCCTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTTCGCTGTTTCCCAGGCTGGGGTAC<br />AGTGGCGCGATCTCGGCTGACTGCAACCTCCACATTCCGGGTTCAAGCGATTCTCTGTCTCAGCCTCCGGAGTAGCTGGGATTACGGGAGCCCAACATCA<br />CGCCCGGCTCATTTTTGTATTTTTAGTGGAGACGGGGTTTCGCCTTCTTGGCCAGGCTGGTTTCAAACTCCTGACCTCAGGTGATCCGCCTACCTCGGCC<br />TTCCGAAGTGCTGGGATTACAGGTGTGAACCACCGCGTTTTCTTCCTTTTAAAGCGACCAAGAGGGAAAAAGGCACAGAAGATTGCTCAGGTCCTACTGT<br />GGAGTCCTCGGCAGAGCTGGGGCTTATCAGGTTCTCTTGCCCCTAGTGTGGTACTTGTTCCCACTACACCAGCCTCTTCCAGTCTTACCTTTTTACGAAG<br />ACCTGGGCTGTCCATGGACAGAGGTCCTCAGGAGTCACAACTCTGGGCATGGCGGATCCAGCTGGACCTGCTTAGGACACCGCCCATAAAAGACTCCTCC<br />AGCCTGTAGCAAAAAGAGGTGGCAAAAAGGGTGGCAACAGTACCTACAAGGTCAAAGACGGTGCTGGGAAAAACAGCTCCAGTGGCAAATTAAACTCAGT<br />CCCCAGTTCAAGGACCTCACAGACTGGAGACGTGGAGGCGAAGGTAGCAGTGAGCTGAAATTGCGCCACTGCACTCCAGCCTGGGTGACAGTGAGACTCT<br />GTCTCAAAAAAAAAGAAAAAAGAAAGAAG

Expression



Full and truncated open reading frames discovered in TCONS_00062352

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT031130 (Evalue: 3.0E-73)

Best hit to Swiss-Prot:
sp|Q8N976|YG039_HUMAN (Evalue: 3.0E-20)