Detailed information on TCONS_00062352

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00062352 542 284 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00062352 608 297 UTR3 Trans

Sequence

>TCONS_00116668 (1428 nt)
CCTACGCAGGTCACAAACATCTTTCTATGATTGTATAATTTTCAAGCAAGCAATAAGTGAAGATTTTTCCATAGGCCCTAAACTCACCTTTGCGAAATAG
GAAGCTGGTTTATTGGGAGTGATGAGCAGGGGGCGTAACAAATTAGCTTTGCGCAGTGGCAGTATCGTAGCCAATGAGGTCTATCCGAGGCGCGATTATT
GCTAATTGAAAACTTTTCCCAATACCCCGCCATGACGACTTGAAATATAGTCGGCATTGGCAATTTTTGACAGTCTCTACGGAGACTGAATTTTTAAAAG
TCTAAAGAAAAGGGTTTTAGGAAGTTGTATTATAGCAGGTTGTGTCTTATGTTTGGTTTGATAAGTTATGAGCTGTTCCTATGATAGTTTTTTGGTTGTT
GTTCAGGAGTATTCCGTGATTGAATGTCCGGGGTTCTGTGCGGGTACTGTGAGTTGTTTTCCAAAATGTATGACACTATGTTGGGAACTGGGTTCTAACT
AAGACAGTTATCGTTAATCTTTTTTATCCAAATGCAGCCAGCGAGTGAGCTACTCCACTTCCTTTGTCACTGAAGGTCACAGATTCCCTTAAAGGGAAGG
GGAACTCTAAAACTAACACATTAATACATCCAAAGTCTTCCTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTTCGCTGTTTCCCAGGCTGGGGTAC
AGTGGCGCGATCTCGGCTGACTGCAACCTCCACATTCCGGGTTCAAGCGATTCTCTGTCTCAGCCTCCGGAGTAGCTGGGATTACGGGAGCCCAACATCA
CGCCCGGCTCATTTTTGTATTTTTAGTGGAGACGGGGTTTCGCCTTCTTGGCCAGGCTGGTTTCAAACTCCTGACCTCAGGTGATCCGCCTACCTCGGCC
TTCCGAAGTGCTGGGATTACAGGTGTGAACCACCGCGTTTTCTTCCTTTTAAAGCGACCAAGAGGGAAAAAGGCACAGAAGATTGCTCAGGTCCTACTGT
GGAGTCCTCGGCAGAGCTGGGGCTTATCAGGTTCTCTTGCCCCTAGTGTGGTACTTGTTCCCACTACACCAGCCTCTTCCAGTCTTACCTTTTTACGAAG
ACCTGGGCTGTCCATGGACAGAGGTCCTCAGGAGTCACAACTCTGGGCATGGCGGATCCAGCTGGACCTGCTTAGGACACCGCCCATAAAAGACTCCTCC
AGCCTGTAGCAAAAAGAGGTGGCAAAAAGGGTGGCAACAGTACCTACAAGGTCAAAGACGGTGCTGGGAAAAACAGCTCCAGTGGCAAATTAAACTCAGT
CCCCAGTTCAAGGACCTCACAGACTGGAGACGTGGAGGCGAAGGTAGCAGTGAGCTGAAATTGCGCCACTGCACTCCAGCCTGGGTGACAGTGAGACTCT
GTCTCAAAAAAAAAGAAAAAAGAAAGAAG

Expression



Full and truncated open reading frames discovered in TCONS_00116668

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.